Wall clock time and date at job start Mon Mar 30 2020 04:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47013 * 2 1 4 4 N 1.46504 * 109.46996 * 119.99910 * 2 1 3 5 5 C 1.46494 * 119.99933 * 115.95661 * 4 2 1 6 6 C 1.50710 * 109.47078 * 90.58186 * 5 4 2 7 7 H 1.07994 * 119.99652 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99489 * 179.97438 * 6 5 4 9 9 N 1.31504 * 120.00532 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99461 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46934 * 270.00012 * 10 8 6 12 12 H 1.48496 * 109.47116 * 149.99806 * 10 8 6 13 13 H 1.48506 * 109.47131 * 29.99993 * 10 8 6 14 14 C 1.34777 * 119.99977 * 295.95096 * 4 2 1 15 15 O 1.21286 * 120.00109 * 5.22745 * 14 4 2 16 16 C 1.50699 * 119.99869 * 185.21721 * 14 4 2 17 17 H 1.09000 * 109.50107 * 331.78978 * 16 14 4 18 18 C 1.53120 * 109.50110 * 91.86949 * 16 14 4 19 19 C 1.53114 * 109.16171 * 62.28432 * 18 16 14 20 20 C 1.53037 * 109.27789 * 57.65479 * 19 18 16 21 21 N 1.46846 * 109.52537 * 300.82080 * 20 19 18 22 22 C 1.46851 * 111.19673 * 61.73784 * 21 20 19 23 23 H 1.08996 * 109.45676 * 58.27992 * 22 21 20 24 24 C 1.53000 * 109.45916 * 178.24395 * 22 21 20 25 25 H 1.09001 * 109.47292 * 297.26786 * 1 2 3 26 26 H 1.08996 * 109.47017 * 57.26351 * 1 2 3 27 27 H 1.09000 * 109.47073 * 177.26839 * 1 2 3 28 28 H 1.08997 * 109.47336 * 239.99981 * 2 1 3 29 29 H 1.08996 * 109.46696 * 184.61946 * 3 2 1 30 30 H 1.08993 * 109.46870 * 304.61897 * 3 2 1 31 31 H 1.09003 * 109.47267 * 64.61967 * 3 2 1 32 32 H 1.09002 * 109.47232 * 330.58762 * 5 4 2 33 33 H 1.08999 * 109.47234 * 210.58125 * 5 4 2 34 34 H 0.97003 * 120.00286 * 0.02562 * 9 8 6 35 35 H 1.09000 * 109.51796 * 182.19193 * 18 16 14 36 36 H 1.08999 * 109.51938 * 302.37983 * 18 16 14 37 37 H 1.08998 * 109.50398 * 177.59586 * 19 18 16 38 38 H 1.08997 * 109.50729 * 297.67642 * 19 18 16 39 39 H 1.09007 * 109.46431 * 60.83490 * 20 19 18 40 40 H 1.08997 * 109.46794 * 180.81358 * 20 19 18 41 41 H 1.00897 * 111.00657 * 185.83786 * 21 20 19 42 42 H 1.09004 * 109.46987 * 180.02562 * 24 22 21 43 43 H 1.09002 * 109.47355 * 300.04764 * 24 22 21 44 44 H 1.08989 * 109.47264 * 60.05680 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7860 -1.9312 1.0637 6 6 4.2549 -1.6060 0.9747 7 1 4.5836 -0.5780 1.0135 8 6 5.1790 -2.6210 0.8449 9 7 4.7787 -3.8728 0.7981 10 14 6.9997 -2.2179 0.7354 11 1 7.3795 -2.0263 -0.6874 12 1 7.7896 -3.3351 1.3124 13 1 7.2773 -0.9718 1.4940 14 6 1.7614 -0.1845 2.4186 15 8 1.0469 0.7888 2.5341 16 6 2.3616 -0.8280 3.6420 17 1 2.5259 -1.8886 3.4517 18 6 3.6970 -0.1547 3.9706 19 6 3.4494 1.3213 4.2941 20 6 2.4635 1.4245 5.4600 21 7 1.2022 0.7665 5.0959 22 6 1.4072 -0.6625 4.8267 23 1 1.8357 -1.1400 5.7078 24 6 0.0644 -1.3164 4.4949 25 1 -0.3634 0.4708 0.9135 26 1 -0.3633 0.5557 -0.8644 27 1 -0.3633 -1.0265 -0.0490 28 1 1.8934 -0.5138 -0.8899 29 1 3.1268 1.4436 -0.0828 30 1 1.6107 1.9796 -0.8457 31 1 1.7458 1.9319 0.9285 32 1 2.4749 -2.4563 0.1605 33 1 2.6060 -2.5645 1.9324 34 1 3.8332 -4.0821 0.8546 35 1 4.1500 -0.6455 4.8321 36 1 4.3650 -0.2326 3.1128 37 1 4.3908 1.7961 4.5705 38 1 3.0330 1.8207 3.4194 39 1 2.8871 0.9371 6.3382 40 1 2.2739 2.4744 5.6835 41 1 0.5034 0.9032 5.8108 42 1 0.2163 -2.3772 4.2955 43 1 -0.6155 -1.1987 5.3388 44 1 -0.3641 -0.8393 3.6137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384439825.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:07 Heat of formation + Delta-G solvation = -44.440190 kcal Electronic energy + Delta-G solvation = -23062.963238 eV Core-core repulsion = 20014.739671 eV Total energy + Delta-G solvation = -3048.223567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.02504 -37.53197 -35.02715 -33.47278 -32.37916 -31.97841 -30.62578 -26.82758 -26.60702 -26.34502 -23.70486 -22.93806 -21.97548 -21.08882 -19.80838 -17.61235 -16.64709 -16.36950 -15.62511 -15.09255 -14.87123 -14.25150 -13.83256 -13.75739 -13.46436 -13.26681 -12.99132 -12.70988 -12.38720 -12.29532 -12.18042 -11.82708 -11.63291 -11.56364 -11.48534 -11.21952 -11.13625 -10.78712 -10.72737 -10.62500 -10.46775 -10.26222 -10.17172 -9.88256 -9.79713 -9.14604 -8.56282 -8.40058 -7.80203 -7.48268 -6.46403 -4.21831 3.37088 3.38968 3.54752 3.64639 4.02015 4.43400 4.49033 5.10324 5.20931 5.25552 5.30218 5.46574 5.47859 5.62759 5.70402 5.75265 5.80743 5.84431 5.91986 5.99111 6.07712 6.13447 6.14307 6.23578 6.25295 6.36935 6.37938 6.42780 6.48189 6.53489 6.72208 6.77437 6.81641 6.86544 6.88854 6.98769 7.44657 7.65814 7.76535 7.93103 8.25739 8.57395 8.72377 9.29925 9.49282 10.88412 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016162 B = 0.008374 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.076771 B = 3342.802670 C = 4019.375328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.152 3.848 3 C -0.164 4.164 4 N -0.597 5.597 5 C 0.228 3.772 6 C -0.606 4.606 7 H 0.056 0.944 8 C 0.023 3.977 9 N -0.908 5.908 10 Si 1.066 2.934 11 H -0.288 1.288 12 H -0.284 1.284 13 H -0.287 1.287 14 C 0.530 3.470 15 O -0.530 6.530 16 C -0.097 4.097 17 H 0.094 0.906 18 C -0.109 4.109 19 C -0.119 4.119 20 C 0.067 3.933 21 N -0.658 5.658 22 C 0.103 3.897 23 H 0.033 0.967 24 C -0.148 4.148 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.020 0.980 33 H 0.025 0.975 34 H 0.268 0.732 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.018 0.982 40 H 0.065 0.935 41 H 0.330 0.670 42 H 0.055 0.945 43 H 0.049 0.951 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.489 6.476 5.895 10.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 C -0.222 4.222 4 N -0.329 5.329 5 C 0.108 3.892 6 C -0.645 4.645 7 H 0.074 0.926 8 C -0.182 4.182 9 N -0.544 5.544 10 Si 0.895 3.105 11 H -0.214 1.214 12 H -0.209 1.209 13 H -0.213 1.213 14 C 0.318 3.682 15 O -0.407 6.407 16 C -0.118 4.118 17 H 0.112 0.888 18 C -0.147 4.147 19 C -0.157 4.157 20 C -0.062 4.062 21 N -0.289 5.289 22 C -0.007 4.007 23 H 0.051 0.949 24 C -0.206 4.206 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.038 0.962 33 H 0.043 0.957 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.036 0.964 40 H 0.084 0.916 41 H 0.148 0.852 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.317 6.473 5.126 9.317 hybrid contribution -1.147 0.090 0.911 1.467 sum -5.464 6.563 6.037 10.458 Atomic orbital electron populations 1.22197 0.96292 1.01071 1.02686 1.20729 0.93052 0.93145 0.88311 1.22145 1.00873 0.96527 1.02678 1.48160 1.53781 1.26384 1.04604 1.19468 0.91572 0.81622 0.96583 1.22328 0.91328 0.95511 1.55332 0.92579 1.25739 1.05838 0.93002 0.93634 1.70789 1.18616 1.18823 1.46145 0.83567 0.74761 0.75361 0.76851 1.21425 1.20948 1.21344 1.20027 0.80373 0.83986 0.83846 1.90569 1.37432 1.26680 1.86046 1.21388 0.95628 1.01595 0.93206 0.88848 1.21509 0.96006 0.94588 1.02630 1.21618 0.97557 0.97264 0.99256 1.21812 0.90522 0.98186 0.95683 1.60187 1.08837 1.11809 1.48078 1.21261 0.95358 0.88357 0.95718 0.94883 1.21864 0.96378 0.99916 1.02393 0.90562 0.92994 0.93584 0.90568 0.92927 0.93236 0.90388 0.96201 0.95719 0.92155 0.92429 0.88987 0.92457 0.90583 0.96406 0.91608 0.85247 0.92582 0.93229 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.21 37.16 0.34 -2.44 16 2 C 0.15 2.89 3.27 -67.93 -0.22 2.67 16 3 C -0.16 -2.98 9.13 37.16 0.34 -2.64 16 4 N -0.60 -12.49 2.41 -167.46 -0.40 -12.90 16 5 C 0.23 5.35 4.17 -5.19 -0.02 5.33 16 6 C -0.61 -15.48 8.12 -34.43 -0.28 -15.76 16 7 H 0.06 1.48 7.26 -52.49 -0.38 1.10 16 8 C 0.02 0.60 5.46 -17.82 -0.10 0.51 16 9 N -0.91 -25.54 13.65 55.43 0.76 -24.79 16 10 Si 1.07 23.98 29.90 -169.99 -5.08 18.89 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.19 7.11 56.52 0.40 -5.78 16 14 C 0.53 10.66 4.43 -10.99 -0.05 10.61 16 15 O -0.53 -11.00 9.45 5.55 0.05 -10.95 16 16 C -0.10 -1.81 2.08 -91.69 -0.19 -2.00 16 17 H 0.09 1.89 5.76 -51.93 -0.30 1.59 16 18 C -0.11 -2.00 5.50 -26.61 -0.15 -2.15 16 19 C -0.12 -1.97 5.73 -26.65 -0.15 -2.13 16 20 C 0.07 0.98 6.55 -3.83 -0.03 0.96 16 21 N -0.66 -10.15 4.85 -106.76 -0.52 -10.66 16 22 C 0.10 1.65 2.65 -67.72 -0.18 1.47 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 C -0.15 -2.22 9.15 37.16 0.34 -1.88 16 25 H 0.08 1.41 6.23 -51.93 -0.32 1.09 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.48 7.82 -51.93 -0.41 1.07 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.53 5.93 -51.93 -0.31 1.22 16 32 H 0.02 0.49 7.81 -51.93 -0.41 0.09 16 33 H 0.03 0.60 5.78 -51.93 -0.30 0.30 16 34 H 0.27 7.46 7.22 -40.82 -0.29 7.16 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.94 6.19 -51.93 -0.32 1.62 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.45 6.74 -51.93 -0.35 1.10 16 39 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.33 4.37 8.79 -39.29 -0.35 4.03 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 1.23 6.65 -51.94 -0.35 0.89 16 LS Contribution 328.77 15.07 4.95 4.95 Total: -1.00 -27.74 328.77 -8.11 -35.85 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -7.53 Total: 7.05 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -0.34 Total: -7.45 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -0.16 Total: -48.35 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.05 Total: -10.95 kcal Atomic # 14 Polarization: 23.98 SS G_CDS: -5.08 Total: 18.89 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.74 -8.11 -35.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384439825.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.588 kcal (2) G-P(sol) polarization free energy of solvation -27.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds