Wall clock time and date at job start Mon Mar 30 2020 04:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47013 * 2 1 4 4 N 1.46504 * 109.46996 * 119.99910 * 2 1 3 5 5 C 1.46494 * 119.99933 * 115.95661 * 4 2 1 6 6 C 1.50710 * 109.47078 * 90.58186 * 5 4 2 7 7 H 1.07994 * 119.99652 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99489 * 179.97438 * 6 5 4 9 9 N 1.31504 * 120.00532 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99461 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46934 * 270.00012 * 10 8 6 12 12 H 1.48496 * 109.47116 * 149.99806 * 10 8 6 13 13 H 1.48506 * 109.47131 * 29.99993 * 10 8 6 14 14 C 1.34777 * 119.99977 * 295.95096 * 4 2 1 15 15 O 1.21286 * 120.00109 * 5.22745 * 14 4 2 16 16 C 1.50699 * 119.99869 * 185.21721 * 14 4 2 17 17 H 1.09000 * 109.50107 * 331.78978 * 16 14 4 18 18 C 1.53120 * 109.50110 * 91.86949 * 16 14 4 19 19 C 1.53114 * 109.16171 * 62.28432 * 18 16 14 20 20 C 1.53037 * 109.27789 * 57.65479 * 19 18 16 21 21 N 1.46846 * 109.52537 * 300.82080 * 20 19 18 22 22 C 1.46851 * 111.19673 * 61.73784 * 21 20 19 23 23 H 1.08996 * 109.45676 * 58.27992 * 22 21 20 24 24 C 1.53000 * 109.45916 * 178.24395 * 22 21 20 25 25 H 1.09001 * 109.47292 * 297.26786 * 1 2 3 26 26 H 1.08996 * 109.47017 * 57.26351 * 1 2 3 27 27 H 1.09000 * 109.47073 * 177.26839 * 1 2 3 28 28 H 1.08997 * 109.47336 * 239.99981 * 2 1 3 29 29 H 1.08996 * 109.46696 * 184.61946 * 3 2 1 30 30 H 1.08993 * 109.46870 * 304.61897 * 3 2 1 31 31 H 1.09003 * 109.47267 * 64.61967 * 3 2 1 32 32 H 1.09002 * 109.47232 * 330.58762 * 5 4 2 33 33 H 1.08999 * 109.47234 * 210.58125 * 5 4 2 34 34 H 0.97003 * 120.00286 * 0.02562 * 9 8 6 35 35 H 1.09000 * 109.51796 * 182.19193 * 18 16 14 36 36 H 1.08999 * 109.51938 * 302.37983 * 18 16 14 37 37 H 1.08998 * 109.50398 * 177.59586 * 19 18 16 38 38 H 1.08997 * 109.50729 * 297.67642 * 19 18 16 39 39 H 1.09007 * 109.46431 * 60.83490 * 20 19 18 40 40 H 1.08997 * 109.46794 * 180.81358 * 20 19 18 41 41 H 1.00897 * 111.00657 * 185.83786 * 21 20 19 42 42 H 1.09004 * 109.46987 * 180.02562 * 24 22 21 43 43 H 1.09002 * 109.47355 * 300.04764 * 24 22 21 44 44 H 1.08989 * 109.47264 * 60.05680 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7860 -1.9312 1.0637 6 6 4.2549 -1.6060 0.9747 7 1 4.5836 -0.5780 1.0135 8 6 5.1790 -2.6210 0.8449 9 7 4.7787 -3.8728 0.7981 10 14 6.9997 -2.2179 0.7354 11 1 7.3795 -2.0263 -0.6874 12 1 7.7896 -3.3351 1.3124 13 1 7.2773 -0.9718 1.4940 14 6 1.7614 -0.1845 2.4186 15 8 1.0469 0.7888 2.5341 16 6 2.3616 -0.8280 3.6420 17 1 2.5259 -1.8886 3.4517 18 6 3.6970 -0.1547 3.9706 19 6 3.4494 1.3213 4.2941 20 6 2.4635 1.4245 5.4600 21 7 1.2022 0.7665 5.0959 22 6 1.4072 -0.6625 4.8267 23 1 1.8357 -1.1400 5.7078 24 6 0.0644 -1.3164 4.4949 25 1 -0.3634 0.4708 0.9135 26 1 -0.3633 0.5557 -0.8644 27 1 -0.3633 -1.0265 -0.0490 28 1 1.8934 -0.5138 -0.8899 29 1 3.1268 1.4436 -0.0828 30 1 1.6107 1.9796 -0.8457 31 1 1.7458 1.9319 0.9285 32 1 2.4749 -2.4563 0.1605 33 1 2.6060 -2.5645 1.9324 34 1 3.8332 -4.0821 0.8546 35 1 4.1500 -0.6455 4.8321 36 1 4.3650 -0.2326 3.1128 37 1 4.3908 1.7961 4.5705 38 1 3.0330 1.8207 3.4194 39 1 2.8871 0.9371 6.3382 40 1 2.2739 2.4744 5.6835 41 1 0.5034 0.9032 5.8108 42 1 0.2163 -2.3772 4.2955 43 1 -0.6155 -1.1987 5.3388 44 1 -0.3641 -0.8393 3.6137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384439825.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:07 Heat of formation + Delta-G solvation = -60.366207 kcal Electronic energy + Delta-G solvation = -23063.653842 eV Core-core repulsion = 20014.739671 eV Total energy + Delta-G solvation = -3048.914171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.55287 -38.95810 -36.72590 -35.27600 -33.71039 -33.56732 -32.12147 -28.38866 -28.08272 -27.98642 -25.13345 -24.86552 -23.43440 -22.41273 -21.24814 -19.45054 -18.37198 -17.82635 -17.20262 -16.57791 -16.36440 -15.69723 -15.56819 -15.13514 -15.08887 -14.67257 -14.45872 -14.29970 -13.94857 -13.84146 -13.57451 -13.45703 -13.32944 -12.91094 -12.88568 -12.64597 -12.60143 -12.47597 -12.39080 -12.11451 -11.96631 -11.86232 -11.75102 -11.30857 -11.19914 -11.06351 -10.54152 -10.02273 -9.26302 -9.02849 -8.56063 -6.34580 1.53913 1.59754 1.77663 2.03766 2.40689 2.56820 3.17379 3.28998 3.72167 3.83009 3.92862 4.06224 4.18967 4.24565 4.27625 4.38405 4.43236 4.49553 4.54377 4.66994 4.73972 4.75350 4.77758 4.83996 4.90450 4.92937 4.94640 4.96291 5.00471 5.07485 5.08821 5.24561 5.33107 5.38879 5.39487 5.43064 5.89870 5.95177 6.21907 6.24252 6.55124 6.68910 6.88013 7.41326 7.68684 8.76089 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016162 B = 0.008374 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.076771 B = 3342.802670 C = 4019.375328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.140 3.860 3 C -0.152 4.152 4 N -0.605 5.605 5 C 0.242 3.758 6 C -0.599 4.599 7 H 0.045 0.955 8 C -0.020 4.020 9 N -0.932 5.932 10 Si 1.106 2.894 11 H -0.278 1.278 12 H -0.283 1.283 13 H -0.274 1.274 14 C 0.531 3.469 15 O -0.533 6.533 16 C -0.099 4.099 17 H 0.071 0.929 18 C -0.108 4.108 19 C -0.114 4.114 20 C 0.071 3.929 21 N -0.671 5.671 22 C 0.107 3.893 23 H 0.048 0.952 24 C -0.142 4.142 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.005 0.995 33 H 0.017 0.983 34 H 0.259 0.741 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.036 0.964 40 H 0.082 0.918 41 H 0.346 0.654 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.685 7.654 6.919 11.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.037 3.963 3 C -0.210 4.210 4 N -0.337 5.337 5 C 0.120 3.880 6 C -0.638 4.638 7 H 0.063 0.937 8 C -0.220 4.220 9 N -0.570 5.570 10 Si 0.929 3.071 11 H -0.204 1.204 12 H -0.209 1.209 13 H -0.199 1.199 14 C 0.319 3.681 15 O -0.411 6.411 16 C -0.121 4.121 17 H 0.089 0.911 18 C -0.146 4.146 19 C -0.152 4.152 20 C -0.058 4.058 21 N -0.304 5.304 22 C -0.003 4.003 23 H 0.066 0.934 24 C -0.199 4.199 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.023 0.977 33 H 0.035 0.965 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.101 0.899 41 H 0.165 0.835 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.544 7.678 6.157 10.840 hybrid contribution -1.133 -0.239 0.576 1.293 sum -5.676 7.440 6.733 11.528 Atomic orbital electron populations 1.22062 0.94350 1.01332 1.03141 1.20956 0.94612 0.93353 0.87381 1.22027 0.99847 0.96019 1.03122 1.48201 1.53870 1.25876 1.05785 1.19135 0.90956 0.82564 0.95358 1.22435 0.92419 0.94769 1.54156 0.93682 1.26920 1.09394 0.92613 0.93057 1.70895 1.18053 1.19720 1.48296 0.83048 0.70845 0.75676 0.77522 1.20359 1.20876 1.19880 1.20247 0.80077 0.83846 0.83912 1.90558 1.37593 1.26841 1.86109 1.21417 0.96721 0.99999 0.93939 0.91057 1.21456 0.95125 0.96257 1.01716 1.21567 0.99042 0.95476 0.99121 1.21804 0.89650 0.99342 0.95033 1.60102 1.09802 1.11265 1.49257 1.21201 0.95070 0.89239 0.94789 0.93388 1.21800 0.96319 0.99467 1.02346 0.92042 0.90197 0.93674 0.91220 0.94562 0.90259 0.91890 0.97735 0.96478 0.93183 0.90997 0.92407 0.90662 0.93498 0.94604 0.89939 0.83465 0.92622 0.90518 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 9.21 71.98 0.66 -4.30 16 2 C 0.14 5.34 3.27 44.99 0.15 5.49 16 3 C -0.15 -5.45 9.13 71.98 0.66 -4.79 16 4 N -0.60 -25.84 2.41 -802.12 -1.93 -27.77 16 5 C 0.24 11.70 4.17 85.64 0.36 12.05 16 6 C -0.60 -31.26 8.12 25.60 0.21 -31.05 16 7 H 0.04 2.43 7.26 -2.91 -0.02 2.40 16 8 C -0.02 -1.09 5.46 84.66 0.46 -0.63 16 9 N -0.93 -53.37 13.65 21.45 0.29 -53.08 16 10 Si 1.11 48.23 29.90 68.60 2.05 50.28 16 11 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 12 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 13 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 14 C 0.53 21.56 4.43 87.66 0.39 21.95 16 15 O -0.53 -22.07 9.45 -3.05 -0.03 -22.10 16 16 C -0.10 -3.71 2.08 -11.49 -0.02 -3.73 16 17 H 0.07 2.96 5.76 -2.39 -0.01 2.95 16 18 C -0.11 -3.91 5.50 30.67 0.17 -3.74 16 19 C -0.11 -3.64 5.73 30.65 0.18 -3.47 16 20 C 0.07 1.87 6.55 86.33 0.57 2.44 16 21 N -0.67 -19.21 4.85 -491.68 -2.38 -21.59 16 22 C 0.11 3.27 2.65 44.94 0.12 3.39 16 23 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 24 C -0.14 -4.07 9.15 71.98 0.66 -3.41 16 25 H 0.06 2.22 6.23 -2.39 -0.01 2.21 16 26 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.07 2.72 7.82 -2.39 -0.02 2.70 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.06 2.45 5.93 -2.39 -0.01 2.44 16 32 H 0.00 0.24 7.81 -2.39 -0.02 0.22 16 33 H 0.02 0.87 5.78 -2.39 -0.01 0.86 16 34 H 0.26 14.84 7.22 -92.71 -0.67 14.17 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.06 2.48 6.19 -2.39 -0.01 2.46 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.05 1.77 6.74 -2.39 -0.02 1.75 16 39 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.35 8.13 8.79 -89.70 -0.79 7.34 16 42 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.05 1.57 6.65 -2.39 -0.02 1.55 16 Total: -1.00 -59.84 328.77 2.83 -57.00 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 0.29 Total: 27.06 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 4.55 Total: -9.81 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -4.02 Total: -102.44 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.03 Total: -22.10 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.05 Total: 50.28 kcal Total: -59.84 2.83 -57.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384439825.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.361 kcal (2) G-P(sol) polarization free energy of solvation -59.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds