Wall clock time and date at job start Mon Mar 30 2020 05:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47120 * 2 1 4 4 C 1.50702 * 109.47284 * 119.99780 * 2 1 3 5 5 O 1.21278 * 119.99927 * 338.08696 * 4 2 1 6 6 N 1.34770 * 119.99875 * 158.07937 * 4 2 1 7 7 C 1.47075 * 120.88683 * 354.93397 * 6 4 2 8 8 C 1.53238 * 108.52084 * 231.20401 * 7 6 4 9 9 N 1.46896 * 109.34111 * 306.16198 * 8 7 6 10 10 C 1.46898 * 111.00664 * 187.25527 * 9 8 7 11 11 H 1.09004 * 109.46794 * 54.99671 * 10 9 8 12 12 C 1.53001 * 109.46794 * 295.00170 * 10 9 8 13 13 C 1.53000 * 109.47423 * 175.00337 * 10 9 8 14 14 C 1.50699 * 109.46951 * 294.99902 * 13 10 9 15 15 H 1.08002 * 120.00039 * 0.02562 * 14 13 10 16 16 C 1.37872 * 119.99982 * 179.72981 * 14 13 10 17 17 N 1.31514 * 120.00174 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00169 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47045 * 90.00419 * 18 16 14 20 20 H 1.48491 * 109.47270 * 210.00532 * 18 16 14 21 21 H 1.48498 * 109.46941 * 330.00418 * 18 16 14 22 22 C 1.46903 * 111.26542 * 63.10498 * 9 8 7 23 23 C 1.47086 * 120.88171 * 174.94677 * 6 4 2 24 24 H 1.09000 * 109.46908 * 300.00165 * 1 2 3 25 25 H 1.08997 * 109.47123 * 59.99926 * 1 2 3 26 26 H 1.09003 * 109.46742 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46908 * 239.99835 * 2 1 3 28 28 H 1.08993 * 109.47299 * 57.92031 * 3 2 1 29 29 H 1.09004 * 109.46790 * 177.92675 * 3 2 1 30 30 H 1.09000 * 109.46596 * 297.91897 * 3 2 1 31 31 H 1.08994 * 109.63521 * 111.48637 * 7 6 4 32 32 H 1.09003 * 109.62287 * 350.90540 * 7 6 4 33 33 H 1.09005 * 109.49777 * 186.20666 * 8 7 6 34 34 H 1.08997 * 109.49756 * 66.12494 * 8 7 6 35 35 H 1.08998 * 109.47649 * 299.99659 * 12 10 9 36 36 H 1.08999 * 109.47234 * 59.99722 * 12 10 9 37 37 H 1.09003 * 109.46729 * 179.97438 * 12 10 9 38 38 H 1.09000 * 109.46799 * 175.00537 * 13 10 9 39 39 H 1.08990 * 109.47053 * 54.99941 * 13 10 9 40 40 H 0.97002 * 119.99975 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.49176 * 56.85955 * 22 9 8 42 42 H 1.09001 * 109.49248 * 176.93844 * 22 9 8 43 43 H 1.08999 * 109.63088 * 248.50907 * 23 6 4 44 44 H 1.09005 * 109.62707 * 9.08628 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.3159 -0.8191 2.2029 6 7 3.2779 -1.2249 1.2502 7 6 4.1232 -1.2024 0.0469 8 6 4.6584 -2.6171 -0.1985 9 7 5.3227 -3.1038 1.0180 10 6 5.9985 -4.3847 0.7724 11 1 6.6854 -4.2780 -0.0672 12 6 4.9567 -5.4566 0.4460 13 6 6.7800 -4.7968 2.0216 14 6 7.8859 -3.8043 2.2724 15 1 8.0178 -2.9634 1.6076 16 6 8.7253 -3.9663 3.3540 17 7 9.6901 -3.0999 3.5733 18 14 8.4915 -5.4157 4.5090 19 1 9.2963 -6.5671 4.0276 20 1 8.9362 -5.0375 5.8744 21 1 7.0561 -5.7948 4.5432 22 6 4.3747 -3.2143 2.1348 23 6 3.8278 -1.8241 2.4758 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6466 1.9670 0.8707 29 1 3.1295 1.4427 0.0372 30 1 1.7075 1.9454 -0.9081 31 1 4.9568 -0.5165 0.1976 32 1 3.5314 -0.8811 -0.8103 33 1 5.3740 -2.5979 -1.0206 34 1 3.8312 -3.2803 -0.4513 35 1 4.2698 -5.5634 1.2855 36 1 4.3999 -5.1630 -0.4439 37 1 5.4582 -6.4070 0.2633 38 1 7.2084 -5.7878 1.8716 39 1 6.1085 -4.8173 2.8799 40 1 10.2805 -3.2137 4.3345 41 1 3.5514 -3.8692 1.8495 42 1 4.8844 -3.6281 3.0049 43 1 4.6331 -1.1980 2.8600 44 1 3.0408 -1.9137 3.2246 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411135208.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:21 Heat of formation + Delta-G solvation = -33.177247 kcal Electronic energy + Delta-G solvation = -21839.306769 eV Core-core repulsion = 18791.571600 eV Total energy + Delta-G solvation = -3047.735169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.29686 -38.38367 -35.36244 -34.60418 -32.65602 -31.03658 -30.79111 -27.93817 -27.34053 -26.49373 -24.13734 -23.28532 -22.40994 -20.90846 -19.23081 -18.30551 -17.29154 -16.60917 -15.85455 -15.56235 -15.15864 -14.66293 -14.24631 -14.20667 -14.17249 -13.89919 -13.12762 -13.06031 -12.66928 -12.51314 -12.38046 -12.23002 -12.07024 -12.06193 -11.77524 -11.47985 -11.43230 -11.32566 -11.00830 -10.83102 -10.76199 -10.55585 -10.25074 -9.71576 -9.60391 -9.50640 -9.07102 -8.55881 -8.46104 -7.61969 -5.94883 -3.89631 2.69649 3.07417 3.32790 3.41511 3.42875 4.31282 4.42015 4.50745 4.68637 4.84965 4.95163 5.14971 5.28384 5.30137 5.39137 5.42989 5.45788 5.56876 5.58688 5.58982 5.63825 5.70650 5.78406 5.80230 5.86892 5.92416 5.99843 6.00758 6.07316 6.19638 6.28728 6.38726 6.46565 6.66451 6.70934 7.05145 7.26935 7.51129 7.67527 7.73391 7.89387 8.25622 8.67179 9.17277 9.68016 11.18929 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027982 B = 0.004719 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.407991 B = 5932.599867 C = 6117.156437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.117 4.117 3 C -0.141 4.141 4 C 0.516 3.484 5 O -0.549 6.549 6 N -0.608 5.608 7 C 0.110 3.890 8 C 0.038 3.962 9 N -0.508 5.508 10 C 0.097 3.903 11 H 0.078 0.922 12 C -0.187 4.187 13 C -0.009 4.009 14 C -0.493 4.493 15 H 0.079 0.921 16 C 0.063 3.937 17 N -0.906 5.906 18 Si 0.871 3.129 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.269 1.269 22 C 0.043 3.957 23 C 0.115 3.885 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.031 0.969 35 H 0.051 0.949 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.015 0.985 39 H 0.018 0.982 40 H 0.260 0.740 41 H 0.028 0.972 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.962 4.277 -9.910 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.138 4.138 3 C -0.199 4.199 4 C 0.304 3.696 5 O -0.427 6.427 6 N -0.341 5.341 7 C -0.013 4.013 8 C -0.091 4.091 9 N -0.231 5.231 10 C -0.011 4.011 11 H 0.096 0.904 12 C -0.246 4.246 13 C -0.047 4.047 14 C -0.531 4.531 15 H 0.097 0.903 16 C -0.136 4.136 17 N -0.546 5.546 18 Si 0.699 3.301 19 H -0.206 1.206 20 H -0.216 1.216 21 H -0.193 1.193 22 C -0.086 4.086 23 C -0.007 4.007 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.033 0.967 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.046 0.954 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.829 4.606 -9.125 18.010 hybrid contribution -0.442 -1.464 0.416 1.585 sum -15.272 3.142 -8.709 17.859 Atomic orbital electron populations 1.21632 0.92745 1.02423 1.02263 1.21330 0.98046 0.97577 0.96831 1.21731 1.01620 0.93755 1.02749 1.20648 0.80914 0.78445 0.89553 1.90658 1.55697 1.59272 1.37096 1.48241 1.14204 1.58788 1.12879 1.21950 0.94456 0.98111 0.86777 1.22462 0.97497 0.94735 0.94426 1.62017 1.28049 1.29370 1.03691 1.21699 0.93661 0.85124 1.00605 0.90408 1.22564 1.00614 1.00948 1.00498 1.19737 0.95834 0.96679 0.92415 1.21031 1.10844 1.09944 1.11308 0.90262 1.25000 0.95257 0.95861 0.97523 1.69906 1.18761 1.36271 1.29680 0.86924 0.78745 0.83628 0.80770 1.20570 1.21565 1.19344 1.22484 0.93995 0.95366 0.96750 1.21797 0.98366 0.94255 0.86291 0.91569 0.92119 0.92520 0.89023 0.91977 0.91884 0.91478 0.90189 0.89864 0.89809 0.95133 0.93008 0.93747 0.92410 0.96733 0.96404 0.93015 0.95391 0.88259 0.90213 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 8.69 37.16 0.32 -0.96 16 2 C -0.12 -1.19 2.47 -91.77 -0.23 -1.41 16 3 C -0.14 -1.23 9.16 37.16 0.34 -0.89 16 4 C 0.52 7.38 6.84 -10.99 -0.08 7.31 16 5 O -0.55 -9.80 15.51 5.56 0.09 -9.71 16 6 N -0.61 -8.67 3.01 -172.47 -0.52 -9.19 16 7 C 0.11 1.33 6.14 -3.61 -0.02 1.31 16 8 C 0.04 0.52 5.14 -3.70 -0.02 0.50 16 9 N -0.51 -8.91 4.33 -226.35 -0.98 -9.89 16 10 C 0.10 1.80 2.30 -67.71 -0.16 1.65 16 11 H 0.08 1.48 8.07 -51.93 -0.42 1.06 16 12 C -0.19 -2.92 8.51 37.16 0.32 -2.60 16 13 C -0.01 -0.21 3.34 -27.88 -0.09 -0.30 16 14 C -0.49 -13.48 9.39 -34.44 -0.32 -13.80 16 15 H 0.08 2.37 7.99 -52.49 -0.42 1.95 16 16 C 0.06 1.81 5.47 -17.82 -0.10 1.72 16 17 N -0.91 -27.71 13.96 55.43 0.77 -26.94 16 18 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.27 -6.36 6.53 56.52 0.37 -5.99 16 22 C 0.04 0.73 4.77 -3.70 -0.02 0.71 16 23 C 0.12 1.86 6.61 -3.60 -0.02 1.84 16 24 H 0.07 0.72 7.89 -51.93 -0.41 0.31 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.78 6.19 -51.93 -0.32 0.46 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.56 7.81 -51.93 -0.41 0.15 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 0.75 5.50 -51.93 -0.29 0.46 16 33 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16 34 H 0.03 0.41 6.81 -51.93 -0.35 0.06 16 35 H 0.05 0.82 6.56 -51.93 -0.34 0.48 16 36 H 0.04 0.61 6.69 -51.93 -0.35 0.27 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.01 0.33 7.58 -51.93 -0.39 -0.06 16 39 H 0.02 0.41 5.06 -51.93 -0.26 0.15 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.03 0.47 6.71 -51.93 -0.35 0.12 16 42 H 0.10 1.90 5.87 -51.93 -0.31 1.59 16 43 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.09 1.46 7.04 -51.93 -0.37 1.09 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -31.87 332.96 -7.89 -39.76 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.52 Total: -0.91 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -0.07 Total: -4.95 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.73 Total: -46.03 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.87 -7.89 -39.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411135208.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.579 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds