Wall clock time and date at job start Mon Mar 30 2020 05:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47120 * 2 1 4 4 C 1.50702 * 109.47284 * 119.99780 * 2 1 3 5 5 O 1.21278 * 119.99927 * 338.08696 * 4 2 1 6 6 N 1.34770 * 119.99875 * 158.07937 * 4 2 1 7 7 C 1.47075 * 120.88683 * 354.93397 * 6 4 2 8 8 C 1.53238 * 108.52084 * 231.20401 * 7 6 4 9 9 N 1.46896 * 109.34111 * 306.16198 * 8 7 6 10 10 C 1.46898 * 111.00664 * 187.25527 * 9 8 7 11 11 H 1.09004 * 109.46794 * 54.99671 * 10 9 8 12 12 C 1.53001 * 109.46794 * 295.00170 * 10 9 8 13 13 C 1.53000 * 109.47423 * 175.00337 * 10 9 8 14 14 C 1.50699 * 109.46951 * 294.99902 * 13 10 9 15 15 H 1.08002 * 120.00039 * 0.02562 * 14 13 10 16 16 C 1.37872 * 119.99982 * 179.72981 * 14 13 10 17 17 N 1.31514 * 120.00174 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00169 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47045 * 90.00419 * 18 16 14 20 20 H 1.48491 * 109.47270 * 210.00532 * 18 16 14 21 21 H 1.48498 * 109.46941 * 330.00418 * 18 16 14 22 22 C 1.46903 * 111.26542 * 63.10498 * 9 8 7 23 23 C 1.47086 * 120.88171 * 174.94677 * 6 4 2 24 24 H 1.09000 * 109.46908 * 300.00165 * 1 2 3 25 25 H 1.08997 * 109.47123 * 59.99926 * 1 2 3 26 26 H 1.09003 * 109.46742 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46908 * 239.99835 * 2 1 3 28 28 H 1.08993 * 109.47299 * 57.92031 * 3 2 1 29 29 H 1.09004 * 109.46790 * 177.92675 * 3 2 1 30 30 H 1.09000 * 109.46596 * 297.91897 * 3 2 1 31 31 H 1.08994 * 109.63521 * 111.48637 * 7 6 4 32 32 H 1.09003 * 109.62287 * 350.90540 * 7 6 4 33 33 H 1.09005 * 109.49777 * 186.20666 * 8 7 6 34 34 H 1.08997 * 109.49756 * 66.12494 * 8 7 6 35 35 H 1.08998 * 109.47649 * 299.99659 * 12 10 9 36 36 H 1.08999 * 109.47234 * 59.99722 * 12 10 9 37 37 H 1.09003 * 109.46729 * 179.97438 * 12 10 9 38 38 H 1.09000 * 109.46799 * 175.00537 * 13 10 9 39 39 H 1.08990 * 109.47053 * 54.99941 * 13 10 9 40 40 H 0.97002 * 119.99975 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.49176 * 56.85955 * 22 9 8 42 42 H 1.09001 * 109.49248 * 176.93844 * 22 9 8 43 43 H 1.08999 * 109.63088 * 248.50907 * 23 6 4 44 44 H 1.09005 * 109.62707 * 9.08628 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.3159 -0.8191 2.2029 6 7 3.2779 -1.2249 1.2502 7 6 4.1232 -1.2024 0.0469 8 6 4.6584 -2.6171 -0.1985 9 7 5.3227 -3.1038 1.0180 10 6 5.9985 -4.3847 0.7724 11 1 6.6854 -4.2780 -0.0672 12 6 4.9567 -5.4566 0.4460 13 6 6.7800 -4.7968 2.0216 14 6 7.8859 -3.8043 2.2724 15 1 8.0178 -2.9634 1.6076 16 6 8.7253 -3.9663 3.3540 17 7 9.6901 -3.0999 3.5733 18 14 8.4915 -5.4157 4.5090 19 1 9.2963 -6.5671 4.0276 20 1 8.9362 -5.0375 5.8744 21 1 7.0561 -5.7948 4.5432 22 6 4.3747 -3.2143 2.1348 23 6 3.8278 -1.8241 2.4758 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6466 1.9670 0.8707 29 1 3.1295 1.4427 0.0372 30 1 1.7075 1.9454 -0.9081 31 1 4.9568 -0.5165 0.1976 32 1 3.5314 -0.8811 -0.8103 33 1 5.3740 -2.5979 -1.0206 34 1 3.8312 -3.2803 -0.4513 35 1 4.2698 -5.5634 1.2855 36 1 4.3999 -5.1630 -0.4439 37 1 5.4582 -6.4070 0.2633 38 1 7.2084 -5.7878 1.8716 39 1 6.1085 -4.8173 2.8799 40 1 10.2805 -3.2137 4.3345 41 1 3.5514 -3.8692 1.8495 42 1 4.8844 -3.6281 3.0049 43 1 4.6331 -1.1980 2.8600 44 1 3.0408 -1.9137 3.2246 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411135208.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:21 Heat of formation + Delta-G solvation = -54.605376 kcal Electronic energy + Delta-G solvation = -21840.235963 eV Core-core repulsion = 18791.571600 eV Total energy + Delta-G solvation = -3048.664363 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.44900 -39.67910 -36.70011 -35.50510 -34.65533 -32.50017 -32.07763 -29.67080 -28.07426 -27.67951 -25.28416 -24.89954 -23.70945 -22.21475 -20.56842 -19.43746 -18.76106 -18.38759 -17.02428 -16.80970 -16.39177 -16.30214 -15.73044 -15.47134 -15.16700 -15.03071 -14.66740 -14.33145 -14.09004 -13.87125 -13.58315 -13.43811 -13.13901 -13.13329 -13.00806 -12.81003 -12.70339 -12.44685 -12.33137 -12.09318 -11.95683 -11.85062 -11.77651 -11.57614 -11.33171 -11.09868 -10.67058 -10.62644 -9.77429 -8.93087 -8.16478 -6.14772 1.36419 1.39148 1.48444 1.59759 1.96982 2.42023 3.02374 3.22473 3.47125 3.90441 3.94810 4.00730 4.08612 4.10799 4.22764 4.26450 4.32767 4.42959 4.51231 4.55116 4.62675 4.74875 4.77757 4.80275 4.86993 4.89785 4.92793 4.99244 5.04577 5.06102 5.10623 5.21338 5.24436 5.31000 5.31803 5.46497 5.56922 5.75839 6.26592 6.35886 6.45683 6.54692 6.93867 7.14009 7.46159 9.00625 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027982 B = 0.004719 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.407991 B = 5932.599867 C = 6117.156437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.110 4.110 3 C -0.138 4.138 4 C 0.510 3.490 5 O -0.592 6.592 6 N -0.609 5.609 7 C 0.112 3.888 8 C 0.038 3.962 9 N -0.533 5.533 10 C 0.101 3.899 11 H 0.072 0.928 12 C -0.176 4.176 13 C -0.008 4.008 14 C -0.486 4.486 15 H 0.041 0.959 16 C 0.001 3.999 17 N -0.956 5.956 18 Si 0.937 3.063 19 H -0.270 1.270 20 H -0.292 1.292 21 H -0.252 1.252 22 C 0.053 3.947 23 C 0.120 3.880 24 H 0.046 0.954 25 H 0.091 0.909 26 H 0.047 0.953 27 H 0.120 0.880 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.043 0.957 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.019 0.981 39 H 0.017 0.983 40 H 0.260 0.740 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.724 3.575 -12.001 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.131 4.131 3 C -0.196 4.196 4 C 0.300 3.700 5 O -0.473 6.473 6 N -0.341 5.341 7 C -0.010 4.010 8 C -0.090 4.090 9 N -0.258 5.258 10 C -0.007 4.007 11 H 0.090 0.910 12 C -0.235 4.235 13 C -0.046 4.046 14 C -0.525 4.525 15 H 0.059 0.941 16 C -0.194 4.194 17 N -0.599 5.599 18 Si 0.762 3.238 19 H -0.195 1.195 20 H -0.218 1.218 21 H -0.175 1.175 22 C -0.076 4.076 23 C -0.003 4.003 24 H 0.065 0.935 25 H 0.110 0.890 26 H 0.067 0.933 27 H 0.138 0.862 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.142 0.858 33 H 0.115 0.885 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.037 0.963 39 H 0.035 0.965 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.601 3.898 -11.255 20.432 hybrid contribution 0.118 -1.157 1.013 1.543 sum -16.483 2.741 -10.242 19.599 Atomic orbital electron populations 1.21642 0.92348 1.02082 1.02826 1.21424 0.98307 0.98038 0.95296 1.21750 1.01495 0.92747 1.03594 1.21525 0.80253 0.77759 0.90458 1.90638 1.56787 1.60784 1.39053 1.48330 1.14620 1.58413 1.12732 1.22120 0.94621 0.97136 0.87147 1.22573 0.97949 0.95545 0.92963 1.61922 1.29172 1.29133 1.05534 1.21500 0.94345 0.86826 0.98080 0.91029 1.22416 0.99664 1.00047 1.01329 1.19694 0.94751 0.95444 0.94688 1.21271 1.11728 1.09439 1.10013 0.94118 1.25860 0.95108 0.98833 0.99598 1.70068 1.20317 1.38767 1.30746 0.85862 0.79630 0.80171 0.78138 1.19507 1.21847 1.17533 1.22295 0.93758 0.95682 0.95856 1.21538 0.97544 0.93801 0.87445 0.93498 0.89038 0.93348 0.86242 0.93467 0.91966 0.88520 0.90885 0.85750 0.88539 0.93880 0.93282 0.91451 0.91599 0.96279 0.96461 0.93133 0.94567 0.90921 0.92051 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.69 71.98 0.63 -1.60 16 2 C -0.11 -1.91 2.47 -11.54 -0.03 -1.94 16 3 C -0.14 -2.02 9.16 71.98 0.66 -1.36 16 4 C 0.51 13.94 6.84 87.66 0.60 14.54 16 5 O -0.59 -21.19 15.51 -3.02 -0.05 -21.23 16 6 N -0.61 -16.67 3.01 -817.96 -2.46 -19.13 16 7 C 0.11 2.42 6.14 86.35 0.53 2.95 16 8 C 0.04 0.95 5.14 86.38 0.44 1.39 16 9 N -0.53 -18.31 4.33 -870.03 -3.77 -22.08 16 10 C 0.10 3.62 2.30 44.92 0.10 3.72 16 11 H 0.07 2.65 8.07 -2.39 -0.02 2.63 16 12 C -0.18 -4.98 8.51 71.98 0.61 -4.37 16 13 C -0.01 -0.37 3.34 29.85 0.10 -0.28 16 14 C -0.49 -27.15 9.39 25.60 0.24 -26.91 16 15 H 0.04 2.53 7.99 -2.91 -0.02 2.51 16 16 C 0.00 0.06 5.47 84.65 0.46 0.53 16 17 N -0.96 -60.32 13.96 21.45 0.30 -60.02 16 18 Si 0.94 44.62 27.47 68.60 1.88 46.51 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 21 H -0.25 -11.17 6.53 99.48 0.65 -10.52 16 22 C 0.05 1.80 4.77 86.38 0.41 2.21 16 23 C 0.12 3.95 6.61 86.35 0.57 4.52 16 24 H 0.05 0.97 7.89 -2.39 -0.02 0.95 16 25 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.12 1.43 6.19 -2.39 -0.01 1.41 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.93 7.81 -2.38 -0.02 0.91 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.12 1.67 5.50 -2.39 -0.01 1.66 16 33 H 0.10 2.18 8.05 -2.38 -0.02 2.16 16 34 H 0.04 0.99 6.81 -2.39 -0.02 0.97 16 35 H 0.05 1.42 6.56 -2.39 -0.02 1.40 16 36 H 0.07 1.61 6.69 -2.39 -0.02 1.60 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.02 0.84 7.58 -2.39 -0.02 0.82 16 39 H 0.02 0.79 5.06 -2.39 -0.01 0.77 16 40 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 41 H 0.04 1.17 6.71 -2.39 -0.02 1.15 16 42 H 0.07 2.83 5.87 -2.39 -0.01 2.82 16 43 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.08 2.76 7.04 -2.38 -0.02 2.74 16 Total: -1.00 -71.73 332.96 2.14 -69.59 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.91 Total: 12.95 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 5.33 Total: -6.58 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -5.93 Total: -101.23 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.05 Total: -21.23 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.51 kcal Total: -71.73 2.14 -69.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411135208.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.984 kcal (2) G-P(sol) polarization free energy of solvation -71.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds