Wall clock time and date at job start Mon Mar 30 2020 04:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.52659 * 2 1 4 4 C 1.53122 * 109.52572 * 239.80242 * 2 1 3 5 5 C 1.53035 * 109.27879 * 182.44109 * 4 2 1 6 6 N 1.46847 * 109.52295 * 59.18248 * 5 4 2 7 7 C 1.46844 * 111.19956 * 298.25848 * 6 5 4 8 8 H 1.09008 * 109.45881 * 301.72737 * 7 6 5 9 9 C 1.53003 * 109.46200 * 181.75975 * 7 6 5 10 10 C 1.53031 * 109.52400 * 61.74066 * 7 6 5 11 11 H 1.09005 * 109.53532 * 180.86447 * 10 7 6 12 12 N 1.46496 * 109.50542 * 60.76305 * 10 7 6 13 13 C 1.34777 * 119.99867 * 85.19282 * 12 10 7 14 14 O 1.21279 * 120.00166 * 0.02562 * 13 12 10 15 15 C 1.50706 * 120.00142 * 180.02562 * 13 12 10 16 16 C 1.52999 * 109.46957 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.46626 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.46866 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99963 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00270 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00302 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99832 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47310 * 89.99428 * 22 20 18 24 24 H 1.48491 * 109.47296 * 209.99911 * 22 20 18 25 25 H 1.48502 * 109.46905 * 329.99956 * 22 20 18 26 26 H 1.08994 * 109.46983 * 299.87802 * 1 2 3 27 27 H 1.09000 * 109.47192 * 59.88125 * 1 2 3 28 28 H 1.08999 * 109.46873 * 179.87658 * 1 2 3 29 29 H 1.09004 * 109.50400 * 302.38850 * 4 2 1 30 30 H 1.08999 * 109.50086 * 62.50151 * 4 2 1 31 31 H 1.09002 * 109.45765 * 179.19609 * 5 4 2 32 32 H 1.08994 * 109.46595 * 299.16381 * 5 4 2 33 33 H 1.00899 * 110.99519 * 174.15736 * 6 5 4 34 34 H 1.08997 * 109.46744 * 299.94483 * 9 7 6 35 35 H 1.09000 * 109.46973 * 59.94738 * 9 7 6 36 36 H 1.09004 * 109.46662 * 179.97438 * 9 7 6 37 37 H 0.96999 * 120.00085 * 265.19888 * 12 10 7 38 38 H 1.08993 * 109.46700 * 59.99973 * 15 13 12 39 39 H 1.09000 * 109.46974 * 300.00347 * 15 13 12 40 40 H 1.08993 * 109.47839 * 60.00178 * 16 15 13 41 41 H 1.09000 * 109.47160 * 299.99740 * 16 15 13 42 42 H 1.09000 * 109.47050 * 299.99699 * 17 16 15 43 43 H 1.09001 * 109.46801 * 59.99811 * 17 16 15 44 44 H 0.97002 * 119.99998 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0418 -0.7259 -1.2473 5 6 3.5709 -0.7760 -1.2110 6 7 4.0102 -1.4789 0.0011 7 6 3.5708 -0.7745 1.2122 8 1 3.9674 0.2408 1.2059 9 6 4.0859 -1.5152 2.4480 10 6 2.0417 -0.7243 1.2483 11 1 1.7155 -0.1881 2.1395 12 7 1.5081 -2.0884 1.2755 13 6 1.3815 -2.7392 2.4489 14 8 1.7089 -2.1954 3.4824 15 6 0.8331 -4.1426 2.4769 16 6 0.7936 -4.6460 3.9212 17 6 0.2373 -6.0711 3.9495 18 6 0.1990 -6.5671 5.3720 19 1 0.5379 -5.9299 6.1754 20 6 -0.2687 -7.8345 5.6478 21 7 -0.3017 -8.2676 6.8891 22 14 -0.8541 -8.9370 4.2580 23 1 0.2872 -9.7384 3.7476 24 1 -1.9129 -9.8482 4.7616 25 1 -1.4019 -8.1006 3.1600 26 1 -0.3633 0.5119 0.8910 27 1 -0.3633 0.5157 -0.8889 28 1 -0.3633 -1.0277 -0.0022 29 1 1.6447 -1.7408 -1.2664 30 1 1.7163 -0.1904 -2.1392 31 1 3.9378 -1.3048 -2.0908 32 1 3.9675 0.2392 -1.2060 33 1 5.0109 -1.6087 0.0011 34 1 3.6890 -2.5303 2.4547 35 1 5.1750 -1.5509 2.4224 36 1 3.7601 -0.9920 3.3471 37 1 1.2459 -2.5232 0.4490 38 1 1.4726 -4.7945 1.8819 39 1 -0.1754 -4.1469 2.0633 40 1 0.1538 -3.9941 4.5159 41 1 1.8019 -4.6416 4.3352 42 1 -0.7709 -6.0759 3.5353 43 1 0.8775 -6.7228 3.3549 44 1 -0.6310 -9.1591 7.0832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594443615.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:44 Heat of formation + Delta-G solvation = -61.829395 kcal Electronic energy + Delta-G solvation = -21350.172647 eV Core-core repulsion = 18301.195028 eV Total energy + Delta-G solvation = -3048.977620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.51225 -38.31653 -34.56639 -34.25305 -33.47423 -32.09253 -31.21161 -28.38728 -27.75005 -26.50104 -23.71941 -22.78300 -21.23021 -20.73862 -19.75107 -19.27964 -17.08571 -16.66612 -16.37089 -15.88398 -15.46713 -14.80003 -14.52381 -14.28181 -14.08888 -13.86184 -13.41990 -13.09791 -12.91734 -12.61477 -12.53382 -12.17112 -12.07296 -11.89672 -11.76471 -11.54724 -11.31196 -11.09072 -10.89986 -10.74205 -10.69237 -10.51524 -9.91289 -9.73949 -9.63326 -9.29504 -9.06722 -8.90312 -8.55273 -8.46569 -5.96462 -3.93782 3.03184 3.35186 3.40483 3.42185 3.45503 3.95371 4.33153 4.47765 4.50555 4.51296 4.88879 5.02752 5.07528 5.16645 5.21539 5.25941 5.35369 5.37147 5.42756 5.53657 5.58262 5.67401 5.70341 5.72927 5.78079 5.88748 5.92076 5.95943 6.04532 6.22802 6.45763 6.63131 6.64981 6.77566 6.87606 7.00344 7.12882 7.45197 7.52875 7.76441 7.88334 8.59069 8.64560 9.10617 9.65972 11.17326 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029595 B = 0.003769 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.862826 B = 7426.624709 C = 7624.728019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 H 0.077 0.923 4 C -0.114 4.114 5 C 0.057 3.943 6 N -0.681 5.681 7 C 0.074 3.926 8 H 0.039 0.961 9 C -0.139 4.139 10 C 0.159 3.841 11 H 0.089 0.911 12 N -0.715 5.715 13 C 0.514 3.486 14 O -0.537 6.537 15 C -0.142 4.142 16 C -0.085 4.085 17 C -0.015 4.015 18 C -0.517 4.517 19 H 0.072 0.928 20 C 0.064 3.936 21 N -0.906 5.906 22 Si 0.881 3.119 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.266 1.266 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.027 0.973 33 H 0.342 0.658 34 H 0.068 0.932 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.398 0.602 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.014 0.986 43 H 0.010 0.990 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.036 17.919 -20.293 27.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 H 0.096 0.904 4 C -0.152 4.152 5 C -0.072 4.072 6 N -0.314 5.314 7 C -0.037 4.037 8 H 0.057 0.943 9 C -0.197 4.197 10 C 0.053 3.947 11 H 0.107 0.893 12 N -0.368 5.368 13 C 0.302 3.698 14 O -0.414 6.414 15 C -0.182 4.182 16 C -0.123 4.123 17 C -0.052 4.052 18 C -0.555 4.555 19 H 0.090 0.910 20 C -0.137 4.137 21 N -0.545 5.545 22 Si 0.708 3.292 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.190 1.190 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.160 0.840 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.233 0.767 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.033 0.967 43 H 0.029 0.971 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.682 17.730 -19.418 26.901 hybrid contribution 0.249 -0.127 -1.126 1.160 sum 5.931 17.603 -20.543 27.696 Atomic orbital electron populations 1.21791 0.94309 1.02433 1.01761 1.21478 0.96533 0.99421 0.94665 0.90419 1.21668 0.95033 1.01203 0.97272 1.21910 0.95785 0.96349 0.93166 1.60259 1.18661 1.51309 1.01121 1.21922 0.95615 0.95393 0.90723 0.94328 1.21877 0.99273 1.02264 0.96292 1.20930 0.91608 0.83992 0.98156 0.89287 1.45924 1.66158 1.15338 1.09400 1.21006 0.77224 0.88560 0.83028 1.90678 1.49304 1.68544 1.32841 1.21848 1.01732 0.92134 1.02459 1.21233 1.01921 0.97804 0.91361 1.19611 0.95554 0.92211 0.97852 1.21179 1.42203 1.00063 0.92053 0.90965 1.25051 0.95363 0.97885 0.95367 1.69927 1.47673 1.18496 1.18409 0.86763 0.78750 0.80649 0.83003 1.20358 1.21495 1.19047 0.92432 0.92622 0.92172 0.91041 0.91363 0.90790 0.95478 0.83977 0.91278 0.93854 0.91166 0.76748 0.89553 0.89752 0.92201 0.92198 0.96747 0.97149 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.02 37.16 0.34 -0.78 16 2 C -0.10 -0.79 2.58 -90.49 -0.23 -1.03 16 3 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.11 -0.78 5.19 -26.65 -0.14 -0.92 16 5 C 0.06 0.41 6.55 -3.83 -0.03 0.38 16 6 N -0.68 -6.05 6.35 -106.76 -0.68 -6.73 16 7 C 0.07 0.76 2.81 -67.73 -0.19 0.57 16 8 H 0.04 0.37 8.14 -51.92 -0.42 -0.05 16 9 C -0.14 -1.76 7.96 37.16 0.30 -1.46 16 10 C 0.16 1.66 2.02 -67.85 -0.14 1.53 16 11 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 12 N -0.72 -8.20 4.01 -53.73 -0.22 -8.41 16 13 C 0.51 7.87 6.16 -10.98 -0.07 7.81 16 14 O -0.54 -10.06 13.14 5.56 0.07 -9.99 16 15 C -0.14 -2.26 5.70 -27.88 -0.16 -2.42 16 16 C -0.09 -1.80 4.44 -26.73 -0.12 -1.92 16 17 C -0.01 -0.36 4.04 -27.88 -0.11 -0.48 16 18 C -0.52 -15.31 9.66 -34.44 -0.33 -15.65 16 19 H 0.07 2.32 7.99 -52.48 -0.42 1.90 16 20 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 21 N -0.91 -28.71 13.96 55.43 0.77 -27.94 16 22 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.49 7.30 -51.93 -0.38 0.11 16 29 H 0.07 0.53 6.68 -51.93 -0.35 0.18 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.34 2.76 8.79 -39.29 -0.35 2.41 16 34 H 0.07 1.04 5.81 -51.93 -0.30 0.74 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.99 7.49 -51.93 -0.39 0.60 16 37 H 0.40 3.89 6.67 -40.82 -0.27 3.62 16 38 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 41 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 42 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 43 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 44 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 336.28 15.07 5.07 5.07 Total: -1.00 -32.94 336.28 -8.48 -41.42 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.85 Total: 1.73 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -0.98 Total: -12.55 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: -0.12 Total: -43.08 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.07 Total: -9.99 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.94 -8.48 -41.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594443615.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.405 kcal (2) G-P(sol) polarization free energy of solvation -32.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds