Wall clock time and date at job start Mon Mar 30 2020 04:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.52659 * 2 1 4 4 C 1.53122 * 109.52572 * 239.80242 * 2 1 3 5 5 C 1.53035 * 109.27879 * 182.44109 * 4 2 1 6 6 N 1.46847 * 109.52295 * 59.18248 * 5 4 2 7 7 C 1.46844 * 111.19956 * 298.25848 * 6 5 4 8 8 H 1.09008 * 109.45881 * 301.72737 * 7 6 5 9 9 C 1.53003 * 109.46200 * 181.75975 * 7 6 5 10 10 C 1.53031 * 109.52400 * 61.74066 * 7 6 5 11 11 H 1.09005 * 109.53532 * 180.86447 * 10 7 6 12 12 N 1.46496 * 109.50542 * 60.76305 * 10 7 6 13 13 C 1.34777 * 119.99867 * 85.19282 * 12 10 7 14 14 O 1.21279 * 120.00166 * 0.02562 * 13 12 10 15 15 C 1.50706 * 120.00142 * 180.02562 * 13 12 10 16 16 C 1.52999 * 109.46957 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.46626 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.46866 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99963 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00270 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00302 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99832 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47310 * 89.99428 * 22 20 18 24 24 H 1.48491 * 109.47296 * 209.99911 * 22 20 18 25 25 H 1.48502 * 109.46905 * 329.99956 * 22 20 18 26 26 H 1.08994 * 109.46983 * 299.87802 * 1 2 3 27 27 H 1.09000 * 109.47192 * 59.88125 * 1 2 3 28 28 H 1.08999 * 109.46873 * 179.87658 * 1 2 3 29 29 H 1.09004 * 109.50400 * 302.38850 * 4 2 1 30 30 H 1.08999 * 109.50086 * 62.50151 * 4 2 1 31 31 H 1.09002 * 109.45765 * 179.19609 * 5 4 2 32 32 H 1.08994 * 109.46595 * 299.16381 * 5 4 2 33 33 H 1.00899 * 110.99519 * 174.15736 * 6 5 4 34 34 H 1.08997 * 109.46744 * 299.94483 * 9 7 6 35 35 H 1.09000 * 109.46973 * 59.94738 * 9 7 6 36 36 H 1.09004 * 109.46662 * 179.97438 * 9 7 6 37 37 H 0.96999 * 120.00085 * 265.19888 * 12 10 7 38 38 H 1.08993 * 109.46700 * 59.99973 * 15 13 12 39 39 H 1.09000 * 109.46974 * 300.00347 * 15 13 12 40 40 H 1.08993 * 109.47839 * 60.00178 * 16 15 13 41 41 H 1.09000 * 109.47160 * 299.99740 * 16 15 13 42 42 H 1.09000 * 109.47050 * 299.99699 * 17 16 15 43 43 H 1.09001 * 109.46801 * 59.99811 * 17 16 15 44 44 H 0.97002 * 119.99998 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0418 -0.7259 -1.2473 5 6 3.5709 -0.7760 -1.2110 6 7 4.0102 -1.4789 0.0011 7 6 3.5708 -0.7745 1.2122 8 1 3.9674 0.2408 1.2059 9 6 4.0859 -1.5152 2.4480 10 6 2.0417 -0.7243 1.2483 11 1 1.7155 -0.1881 2.1395 12 7 1.5081 -2.0884 1.2755 13 6 1.3815 -2.7392 2.4489 14 8 1.7089 -2.1954 3.4824 15 6 0.8331 -4.1426 2.4769 16 6 0.7936 -4.6460 3.9212 17 6 0.2373 -6.0711 3.9495 18 6 0.1990 -6.5671 5.3720 19 1 0.5379 -5.9299 6.1754 20 6 -0.2687 -7.8345 5.6478 21 7 -0.3017 -8.2676 6.8891 22 14 -0.8541 -8.9370 4.2580 23 1 0.2872 -9.7384 3.7476 24 1 -1.9129 -9.8482 4.7616 25 1 -1.4019 -8.1006 3.1600 26 1 -0.3633 0.5119 0.8910 27 1 -0.3633 0.5157 -0.8889 28 1 -0.3633 -1.0277 -0.0022 29 1 1.6447 -1.7408 -1.2664 30 1 1.7163 -0.1904 -2.1392 31 1 3.9378 -1.3048 -2.0908 32 1 3.9675 0.2392 -1.2060 33 1 5.0109 -1.6087 0.0011 34 1 3.6890 -2.5303 2.4547 35 1 5.1750 -1.5509 2.4224 36 1 3.7601 -0.9920 3.3471 37 1 1.2459 -2.5232 0.4490 38 1 1.4726 -4.7945 1.8819 39 1 -0.1754 -4.1469 2.0633 40 1 0.1538 -3.9941 4.5159 41 1 1.8019 -4.6416 4.3352 42 1 -0.7709 -6.0759 3.5353 43 1 0.8775 -6.7228 3.3549 44 1 -0.6310 -9.1591 7.0832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594443615.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:43 Heat of formation + Delta-G solvation = -85.527436 kcal Electronic energy + Delta-G solvation = -21351.200272 eV Core-core repulsion = 18301.195028 eV Total energy + Delta-G solvation = -3050.005244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.46928 -39.35426 -36.11972 -35.35400 -34.35963 -34.10853 -32.21078 -30.07771 -28.42175 -27.52473 -25.45953 -23.46165 -22.33876 -21.93179 -21.25029 -20.12237 -18.92215 -18.00534 -17.41891 -16.78616 -16.60238 -16.26491 -15.69925 -15.47152 -14.95758 -14.81196 -14.72320 -14.63028 -14.18852 -13.77463 -13.65814 -13.35417 -13.26346 -12.87337 -12.76269 -12.66543 -12.53989 -12.46494 -12.27199 -11.77667 -11.73223 -11.65169 -11.46675 -11.42090 -11.30917 -11.18600 -10.73998 -10.61894 -9.87930 -9.28893 -8.26788 -6.32171 1.38987 1.42412 1.54666 1.82780 2.36728 2.39988 3.08301 3.26100 3.61230 3.78799 3.90740 4.00897 4.17532 4.21235 4.28777 4.32844 4.39294 4.55919 4.60854 4.65247 4.69781 4.82654 4.88228 4.92526 4.94235 4.96021 5.00103 5.04150 5.07194 5.14023 5.19613 5.31434 5.40314 5.45608 5.56904 5.62577 5.68162 5.70268 6.15614 6.32195 6.49078 6.73646 6.76829 7.32091 7.46644 8.90956 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029595 B = 0.003769 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.862826 B = 7426.624709 C = 7624.728019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.087 0.913 4 C -0.111 4.111 5 C 0.057 3.943 6 N -0.687 5.687 7 C 0.081 3.919 8 H 0.049 0.951 9 C -0.134 4.134 10 C 0.155 3.845 11 H 0.064 0.936 12 N -0.694 5.694 13 C 0.514 3.486 14 O -0.581 6.581 15 C -0.132 4.132 16 C -0.077 4.077 17 C -0.009 4.009 18 C -0.539 4.539 19 H 0.019 0.981 20 C -0.003 4.003 21 N -0.957 5.957 22 Si 0.961 3.039 23 H -0.264 1.264 24 H -0.285 1.285 25 H -0.237 1.237 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.034 0.966 33 H 0.347 0.653 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.045 0.955 37 H 0.410 0.590 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.036 0.964 41 H 0.034 0.966 42 H 0.029 0.971 43 H 0.027 0.973 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.642 17.962 -24.804 31.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.106 0.894 4 C -0.149 4.149 5 C -0.072 4.072 6 N -0.321 5.321 7 C -0.030 4.030 8 H 0.067 0.933 9 C -0.192 4.192 10 C 0.050 3.950 11 H 0.082 0.918 12 N -0.346 5.346 13 C 0.302 3.698 14 O -0.461 6.461 15 C -0.172 4.172 16 C -0.115 4.115 17 C -0.047 4.047 18 C -0.577 4.577 19 H 0.038 0.962 20 C -0.199 4.199 21 N -0.598 5.598 22 Si 0.783 3.217 23 H -0.189 1.189 24 H -0.211 1.211 25 H -0.160 1.160 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.052 0.948 33 H 0.166 0.834 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.248 0.752 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.045 0.955 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.296 17.803 -23.985 30.336 hybrid contribution 0.428 -0.069 0.388 0.582 sum 5.724 17.734 -23.598 30.068 Atomic orbital electron populations 1.21785 0.94097 1.02267 1.02035 1.21442 0.96610 0.99621 0.93594 0.89449 1.21683 0.94786 1.01148 0.97259 1.21997 0.95954 0.96746 0.92513 1.60234 1.19215 1.51482 1.01124 1.21757 0.95203 0.95608 0.90404 0.93318 1.21771 0.99937 1.00672 0.96789 1.21028 0.92001 0.83173 0.98838 0.91760 1.45702 1.64720 1.15560 1.08647 1.20899 0.77011 0.88470 0.83462 1.90679 1.51398 1.69408 1.34587 1.21690 1.03979 0.92742 0.98775 1.20997 0.99611 0.96033 0.94850 1.19548 0.96778 0.93862 0.94465 1.21558 1.42335 1.00038 0.93758 0.96241 1.26185 0.95247 0.99712 0.98716 1.70107 1.48924 1.19348 1.21428 0.85503 0.78573 0.78237 0.79366 1.18921 1.21101 1.16000 0.93702 0.90839 0.92548 0.91259 0.89335 0.89484 0.94777 0.83385 0.93813 0.92675 0.93592 0.75247 0.87286 0.87096 0.94552 0.94682 0.95255 0.95501 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.02 71.98 0.65 -1.22 16 2 C -0.09 -1.22 2.58 -10.71 -0.03 -1.25 16 3 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.11 -1.11 5.19 30.65 0.16 -0.95 16 5 C 0.06 0.61 6.55 86.33 0.57 1.17 16 6 N -0.69 -10.58 6.35 -491.69 -3.12 -13.71 16 7 C 0.08 1.56 2.81 44.94 0.13 1.69 16 8 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 9 C -0.13 -3.44 7.96 71.98 0.57 -2.87 16 10 C 0.16 3.09 2.02 45.05 0.09 3.18 16 11 H 0.06 1.63 7.58 -2.38 -0.02 1.61 16 12 N -0.69 -14.92 4.01 -442.28 -1.77 -16.69 16 13 C 0.51 15.58 6.16 87.66 0.54 16.12 16 14 O -0.58 -22.71 13.14 -3.03 -0.04 -22.75 16 15 C -0.13 -3.99 5.70 29.85 0.17 -3.82 16 16 C -0.08 -3.29 4.44 30.60 0.14 -3.16 16 17 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 18 C -0.54 -32.99 9.66 25.60 0.25 -32.74 16 19 H 0.02 1.33 7.99 -2.91 -0.02 1.31 16 20 C 0.00 -0.17 5.47 84.65 0.46 0.30 16 21 N -0.96 -62.54 13.96 21.45 0.30 -62.24 16 22 Si 0.96 44.66 27.47 68.60 1.88 46.54 16 23 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 26 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.77 7.30 -2.39 -0.02 0.75 16 29 H 0.07 0.75 6.68 -2.39 -0.02 0.73 16 30 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.35 4.81 8.79 -89.69 -0.79 4.02 16 34 H 0.04 1.34 5.81 -2.39 -0.01 1.32 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.04 1.38 7.49 -2.39 -0.02 1.36 16 37 H 0.41 6.87 6.67 -92.71 -0.62 6.25 16 38 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 39 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 40 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 41 H 0.03 1.64 8.10 -2.39 -0.02 1.62 16 42 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 43 H 0.03 1.21 7.57 -2.39 -0.02 1.19 16 44 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -75.68 336.28 0.57 -75.10 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -0.49 Total: 17.60 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 3.81 Total: -23.86 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -4.60 Total: -92.63 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.04 Total: -22.75 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.54 kcal Total: -75.68 0.57 -75.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594443615.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.423 kcal (2) G-P(sol) polarization free energy of solvation -75.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds