Wall clock time and date at job start Mon Mar 30 2020 04:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.77601 * 2 1 4 4 C 1.55448 * 110.70895 * 236.79204 * 2 1 3 5 5 C 1.54905 * 101.45165 * 206.14261 * 4 2 1 6 6 N 1.47419 * 104.92834 * 37.00468 * 5 4 2 7 7 C 1.34780 * 125.65139 * 155.80015 * 6 5 4 8 8 O 1.21279 * 120.00109 * 180.02562 * 7 6 5 9 9 C 1.50704 * 119.99729 * 0.02562 * 7 6 5 10 10 H 1.08998 * 109.47286 * 320.00645 * 9 7 6 11 11 N 1.46899 * 109.47228 * 200.00305 * 9 7 6 12 12 C 1.52995 * 109.46739 * 80.00209 * 9 7 6 13 13 C 1.53006 * 109.47133 * 184.99814 * 12 9 7 14 14 C 1.52997 * 109.47503 * 179.97438 * 13 12 9 15 15 C 1.50699 * 109.47264 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99972 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99897 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00289 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99690 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47006 * 90.00029 * 19 17 15 21 21 H 1.48499 * 109.46854 * 209.99746 * 19 17 15 22 22 H 1.48500 * 109.47385 * 329.99930 * 19 17 15 23 23 C 1.47026 * 108.70576 * 335.81449 * 6 5 4 24 24 H 1.09000 * 109.88221 * 241.64354 * 23 6 5 25 25 C 1.52996 * 109.88081 * 120.47710 * 23 6 5 26 26 H 1.08995 * 109.47184 * 296.75390 * 1 2 3 27 27 H 1.08997 * 109.47458 * 56.75682 * 1 2 3 28 28 H 1.09004 * 109.46830 * 176.76219 * 1 2 3 29 29 H 1.09002 * 111.11560 * 88.08576 * 4 2 1 30 30 H 1.09004 * 111.00873 * 324.14985 * 4 2 1 31 31 H 1.09002 * 110.36692 * 278.10842 * 5 4 2 32 32 H 1.08995 * 110.36664 * 155.89643 * 5 4 2 33 33 H 1.00897 * 110.99793 * 300.00111 * 11 9 7 34 34 H 1.00905 * 110.99690 * 63.95499 * 11 9 7 35 35 H 1.08995 * 109.47577 * 304.99612 * 12 9 7 36 36 H 1.08998 * 109.47271 * 65.00485 * 12 9 7 37 37 H 1.08999 * 109.47199 * 300.00451 * 13 12 9 38 38 H 1.09003 * 109.46944 * 60.00111 * 13 12 9 39 39 H 1.08999 * 109.47287 * 300.00429 * 14 13 12 40 40 H 1.09003 * 109.46904 * 60.00119 * 14 13 12 41 41 H 0.97001 * 119.99989 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.47259 * 61.45996 * 25 23 6 43 43 H 1.09002 * 109.46915 * 181.45767 * 25 23 6 44 44 H 1.08994 * 109.47308 * 301.45787 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9166 1.0191 0.0000 4 6 2.0797 -0.7963 -1.2166 5 6 3.4633 -1.2496 -0.6877 6 7 3.2446 -1.5507 0.7388 7 6 3.9918 -2.3844 1.4893 8 8 3.7182 -2.5578 2.6580 9 6 5.1672 -3.1010 0.8760 10 1 4.9072 -3.4309 -0.1298 11 7 5.5137 -4.2671 1.6995 12 6 6.3645 -2.1510 0.8076 13 6 7.5184 -2.8367 0.0732 14 6 8.7155 -1.8865 0.0042 15 6 9.8517 -2.5617 -0.7198 16 1 9.7321 -3.5681 -1.0929 17 6 11.0443 -1.8950 -0.9048 18 7 11.1902 -0.6697 -0.4500 19 14 12.4530 -2.7323 -1.8015 20 1 12.3537 -2.4464 -3.2554 21 1 13.7456 -2.2172 -1.2829 22 1 12.3794 -4.1987 -1.5792 23 6 2.0760 -0.7912 1.2072 24 1 2.3742 -0.1025 1.9977 25 6 1.0051 -1.7523 1.7269 26 1 -0.3633 0.4626 0.9176 27 1 -0.3634 0.5633 -0.8594 28 1 -0.3633 -1.0261 -0.0580 29 1 2.1868 -0.1538 -2.0905 30 1 1.4464 -1.6549 -1.4401 31 1 4.1932 -0.4477 -0.7986 32 1 3.7979 -2.1419 -1.2167 33 1 5.7588 -3.9873 2.6375 34 1 4.7621 -4.9402 1.7076 35 1 6.0798 -1.2456 0.2717 36 1 6.6803 -1.8911 1.8180 37 1 7.8031 -3.7422 0.6090 38 1 7.2026 -3.0966 -0.9372 39 1 8.4304 -0.9812 -0.5319 40 1 9.0314 -1.6262 1.0144 41 1 12.0294 -0.2008 -0.5798 42 1 1.4020 -2.3168 2.5707 43 1 0.1321 -1.1841 2.0482 44 1 0.7181 -2.4407 0.9321 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594446394.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:12 Heat of formation + Delta-G solvation = -83.065049 kcal Electronic energy + Delta-G solvation = -21108.981834 eV Core-core repulsion = 18059.083367 eV Total energy + Delta-G solvation = -3049.898467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.56633 -39.21804 -37.14071 -35.27241 -34.18399 -33.14147 -32.11592 -29.74400 -28.71036 -26.83618 -25.77360 -24.43167 -23.24163 -21.72766 -20.65140 -19.87127 -18.44876 -18.38880 -17.41024 -16.90246 -16.68086 -16.45058 -15.80248 -15.61408 -14.97270 -14.67142 -14.56998 -14.31184 -14.17728 -13.80953 -13.59346 -13.52003 -13.08377 -13.04956 -12.89744 -12.81287 -12.49159 -12.36093 -12.32913 -12.20863 -11.81429 -11.55092 -11.44288 -11.42427 -11.33260 -11.22664 -10.95212 -10.51775 -9.74061 -9.70805 -8.16767 -6.27441 1.41636 1.43459 1.46515 1.54837 1.94816 2.43877 3.16256 3.31202 3.52696 3.60489 3.76814 3.84122 3.97450 4.10804 4.18109 4.29053 4.37624 4.49062 4.54447 4.60432 4.63707 4.72456 4.78896 4.88666 4.90294 4.94642 5.08588 5.10026 5.12863 5.20177 5.24821 5.30362 5.33144 5.40395 5.51645 5.60195 5.83061 5.92782 6.00347 6.30187 6.41768 6.45989 6.90117 7.03910 7.41694 8.95103 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028727 B = 0.003637 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.465542 B = 7695.925193 C = 8244.174203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.095 4.095 3 H 0.088 0.912 4 C -0.118 4.118 5 C 0.084 3.916 6 N -0.611 5.611 7 C 0.495 3.505 8 O -0.583 6.583 9 C 0.091 3.909 10 H 0.118 0.882 11 N -0.816 5.816 12 C -0.092 4.092 13 C -0.082 4.082 14 C 0.023 3.977 15 C -0.540 4.540 16 H 0.060 0.940 17 C -0.003 4.003 18 N -0.936 5.936 19 Si 0.965 3.035 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.264 1.264 23 C 0.124 3.876 24 H 0.052 0.948 25 C -0.152 4.152 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.345 0.655 34 H 0.349 0.651 35 H 0.068 0.932 36 H 0.043 0.957 37 H 0.056 0.944 38 H 0.056 0.944 39 H -0.008 1.008 40 H -0.017 1.017 41 H 0.262 0.738 42 H 0.035 0.965 43 H 0.085 0.915 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.015 -0.206 -2.416 24.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 H 0.106 0.894 4 C -0.156 4.156 5 C -0.038 4.038 6 N -0.344 5.344 7 C 0.283 3.717 8 O -0.464 6.464 9 C -0.024 4.024 10 H 0.136 0.864 11 N -0.345 5.345 12 C -0.130 4.130 13 C -0.119 4.119 14 C -0.014 4.014 15 C -0.578 4.578 16 H 0.079 0.921 17 C -0.200 4.200 18 N -0.576 5.576 19 Si 0.789 3.211 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.188 1.188 23 C 0.021 3.979 24 H 0.071 0.929 25 C -0.209 4.209 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.124 0.876 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.011 0.989 40 H 0.001 0.999 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.103 0.897 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.388 -0.347 -2.266 23.500 hybrid contribution 0.357 0.303 0.673 0.820 sum -23.032 -0.044 -1.593 23.087 Atomic orbital electron populations 1.21825 0.92357 1.02727 1.02667 1.22308 0.97529 0.98893 0.92675 0.89369 1.22937 0.93939 1.00841 0.97905 1.22677 0.99517 1.01967 0.79662 1.48823 1.29444 1.43620 1.12469 1.22171 0.84305 0.79050 0.86192 1.90633 1.72171 1.65659 1.17902 1.21574 0.90666 0.91171 0.99038 0.86429 1.59073 1.44486 1.12592 1.18368 1.21418 0.93887 0.97302 1.00390 1.21270 0.93383 0.98258 0.99017 1.19041 0.93385 0.94590 0.94427 1.21727 0.98913 1.00956 1.36160 0.92139 1.25997 1.01720 0.95551 0.96735 1.70106 1.26653 1.13041 1.47818 0.85455 0.77890 0.78976 0.78781 1.19490 1.20957 1.18812 1.21763 0.85703 0.93016 0.97419 0.92934 1.22103 0.98521 0.99556 1.00761 0.92108 0.90921 0.91804 0.87620 0.89714 0.90942 0.89268 0.84135 0.83811 0.91320 0.93853 0.92540 0.92495 0.98933 0.99909 0.92884 0.94558 0.89655 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 7.99 71.98 0.58 -0.74 16 2 C -0.10 -1.26 3.48 -9.50 -0.03 -1.29 16 3 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.12 -1.40 6.55 32.09 0.21 -1.19 16 5 C 0.08 1.48 6.23 86.85 0.54 2.02 16 6 N -0.61 -14.33 3.08 -788.07 -2.43 -16.76 16 7 C 0.50 14.47 6.87 87.66 0.60 15.07 16 8 O -0.58 -20.68 15.14 -3.03 -0.05 -20.72 16 9 C 0.09 2.57 2.57 44.17 0.11 2.68 16 10 H 0.12 2.87 6.91 -2.39 -0.02 2.85 16 11 N -0.82 -23.11 8.44 -171.80 -1.45 -24.56 16 12 C -0.09 -3.16 4.83 30.59 0.15 -3.02 16 13 C -0.08 -3.38 5.04 30.60 0.15 -3.23 16 14 C 0.02 1.22 4.97 29.85 0.15 1.37 16 15 C -0.54 -31.28 9.11 25.60 0.23 -31.05 16 16 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 17 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 18 N -0.94 -57.92 13.29 21.45 0.28 -57.64 16 19 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 23 C 0.12 2.54 3.44 45.34 0.16 2.70 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 C -0.15 -2.93 7.93 71.98 0.57 -2.36 16 26 H 0.06 0.57 7.59 -2.39 -0.02 0.55 16 27 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.60 6.61 -2.39 -0.02 0.59 16 29 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 0.90 8.02 -2.38 -0.02 0.88 16 31 H 0.07 1.36 7.87 -2.39 -0.02 1.34 16 32 H 0.09 1.43 6.92 -2.39 -0.02 1.42 16 33 H 0.35 10.44 8.58 -89.70 -0.77 9.67 16 34 H 0.35 8.45 9.06 -89.69 -0.81 7.64 16 35 H 0.07 2.26 7.41 -2.39 -0.02 2.24 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 2.42 7.75 -2.39 -0.02 2.40 16 38 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 39 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 40 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 41 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.04 0.93 6.74 -2.39 -0.02 0.92 16 43 H 0.08 1.27 6.70 -2.39 -0.02 1.25 16 44 H 0.06 1.11 7.53 -2.39 -0.02 1.09 16 Total: -1.00 -71.10 344.16 1.67 -69.43 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -0.60 Total: 22.13 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 3.88 Total: -18.74 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -3.59 Total: -98.96 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.05 Total: -20.72 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -71.10 1.67 -69.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594446394.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.632 kcal (2) G-P(sol) polarization free energy of solvation -71.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds