Wall clock time and date at job start Mon Mar 30 2020 05:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47088 * 2 1 4 4 C 1.50692 * 109.47381 * 240.00009 * 2 1 3 5 5 H 1.08008 * 120.00039 * 240.00097 * 4 2 1 6 6 C 1.37878 * 120.00166 * 59.99740 * 4 2 1 7 7 N 1.31513 * 119.99882 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99959 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47201 * 90.00051 * 8 6 4 10 10 H 1.48498 * 109.46974 * 209.99999 * 8 6 4 11 11 H 1.48504 * 109.47345 * 330.00136 * 8 6 4 12 12 C 1.50705 * 109.47010 * 119.99592 * 2 1 3 13 13 O 1.21279 * 119.99524 * 102.66989 * 12 2 1 14 14 N 1.34777 * 120.00049 * 282.67229 * 12 2 1 15 15 C 1.46922 * 120.62987 * 354.78356 * 14 12 2 16 16 C 1.53198 * 108.77414 * 233.58703 * 15 14 12 17 17 C 1.53032 * 109.31474 * 305.36755 * 16 15 14 18 18 C 1.52994 * 109.46120 * 181.38758 * 17 16 15 19 19 N 1.46903 * 109.47178 * 174.99755 * 18 17 16 20 20 C 1.46902 * 110.99998 * 169.99609 * 19 18 17 21 21 C 1.46899 * 111.00453 * 293.95223 * 19 18 17 22 22 C 1.53042 * 109.54132 * 61.36367 * 17 16 15 23 23 C 1.46927 * 120.63096 * 174.76521 * 14 12 2 24 24 H 1.08995 * 109.47358 * 293.25333 * 1 2 3 25 25 H 1.08992 * 109.46994 * 53.25660 * 1 2 3 26 26 H 1.09004 * 109.46986 * 173.25442 * 1 2 3 27 27 H 0.97000 * 119.99683 * 180.02562 * 7 6 4 28 28 H 1.09008 * 109.58656 * 113.80293 * 15 14 12 29 29 H 1.08995 * 109.70835 * 353.44475 * 15 14 12 30 30 H 1.09005 * 109.49226 * 185.41641 * 16 15 14 31 31 H 1.08998 * 109.49828 * 65.32418 * 16 15 14 32 32 H 1.09008 * 109.45858 * 301.35716 * 17 16 15 33 33 H 1.08996 * 109.47561 * 54.99996 * 18 17 16 34 34 H 1.08998 * 109.47358 * 294.99840 * 18 17 16 35 35 H 1.09000 * 109.47107 * 179.97438 * 20 19 18 36 36 H 1.09001 * 109.46787 * 60.00157 * 20 19 18 37 37 H 1.09002 * 109.47217 * 300.00306 * 20 19 18 38 38 H 1.09002 * 109.47021 * 296.04735 * 21 19 18 39 39 H 1.09000 * 109.46544 * 56.04135 * 21 19 18 40 40 H 1.08997 * 109.47358 * 176.04126 * 21 19 18 41 41 H 1.09002 * 109.49297 * 58.58301 * 22 17 16 42 42 H 1.08999 * 109.50077 * 178.68664 * 22 17 16 43 43 H 1.08998 * 109.58357 * 246.20055 * 23 14 12 44 44 H 1.09003 * 109.58529 * 6.47907 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6295 -1.7584 -3.7121 12 6 2.0324 -0.7103 1.2306 13 8 2.4516 -1.8453 1.1468 14 7 2.0156 -0.0844 2.4240 15 6 1.6183 1.3266 2.5238 16 6 2.7213 2.0988 3.2546 17 6 3.0017 1.4281 4.6012 18 6 4.0785 2.2167 5.3491 19 7 4.2626 1.6443 6.6894 20 6 5.4439 2.2169 7.3487 21 6 3.0592 1.8302 7.5112 22 6 3.4880 -0.0042 4.3683 23 6 2.3937 -0.8002 3.6501 24 1 -0.3634 0.4057 0.9441 25 1 -0.3633 0.6147 -0.8234 26 1 -0.3633 -1.0206 -0.1207 27 1 0.7090 1.1613 -3.4844 28 1 0.6856 1.4050 3.0825 29 1 1.4820 1.7415 1.5252 30 1 2.3973 3.1263 3.4204 31 1 3.6287 2.0960 2.6508 32 1 2.0875 1.4090 5.1947 33 1 3.7701 3.2583 5.4382 34 1 5.0175 2.1617 4.7984 35 1 5.5565 1.7761 8.3392 36 1 5.3199 3.2956 7.4434 37 1 6.3314 2.0040 6.7528 38 1 2.8889 2.8950 7.6703 39 1 2.1996 1.3973 6.9997 40 1 3.1963 1.3364 8.4732 41 1 4.3882 0.0127 3.7539 42 1 3.7097 -0.4736 5.3267 43 1 1.5243 -0.8953 4.3006 44 1 2.7684 -1.7913 3.3939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597221992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:04 Heat of formation + Delta-G solvation = -41.584062 kcal Electronic energy + Delta-G solvation = -21529.347536 eV Core-core repulsion = 18481.247819 eV Total energy + Delta-G solvation = -3048.099716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.66407 -38.10975 -36.20372 -33.78189 -32.69642 -31.11095 -29.96578 -27.82553 -27.59951 -25.12009 -24.14902 -23.30786 -22.08506 -21.19031 -19.90059 -18.31907 -16.40484 -15.93725 -15.63638 -15.46790 -15.15869 -14.88177 -14.51868 -14.30678 -13.99151 -13.42924 -12.93226 -12.83162 -12.69670 -12.63966 -12.44123 -12.05609 -11.94031 -11.79450 -11.57370 -11.37309 -11.07405 -10.92438 -10.70026 -10.61446 -10.54853 -10.34823 -10.21613 -10.17048 -9.92273 -8.90698 -8.54955 -8.50102 -8.24726 -7.95410 -6.00362 -4.02290 3.36058 3.41521 3.48075 3.73035 3.76577 3.81915 4.49754 4.68880 4.86533 4.91991 5.03700 5.12603 5.25839 5.29838 5.33603 5.37665 5.48526 5.49857 5.58229 5.61876 5.64644 5.70447 5.79527 5.98032 5.98499 6.12751 6.14301 6.20697 6.31864 6.43633 6.55457 6.71339 6.82810 6.84698 6.88375 7.01025 7.24239 7.50844 7.79257 8.02935 8.15694 8.45650 9.04937 9.30858 9.62607 11.07779 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036157 B = 0.003998 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.225137 B = 7001.494058 C = 7045.317613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.031 3.969 3 H 0.049 0.951 4 C -0.500 4.500 5 H 0.071 0.929 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.522 3.478 13 O -0.548 6.548 14 N -0.626 5.626 15 C 0.112 3.888 16 C -0.131 4.131 17 C -0.082 4.082 18 C 0.059 3.941 19 N -0.545 5.545 20 C 0.025 3.975 21 C 0.021 3.979 22 C -0.117 4.117 23 C 0.109 3.891 24 H 0.012 0.988 25 H 0.089 0.911 26 H 0.034 0.966 27 H 0.260 0.740 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.022 0.978 37 H 0.068 0.932 38 H 0.023 0.977 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.255 6.506 18.370 19.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.010 3.990 3 H 0.066 0.934 4 C -0.538 4.538 5 H 0.089 0.911 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.314 3.686 13 O -0.424 6.424 14 N -0.362 5.362 15 C -0.012 4.012 16 C -0.169 4.169 17 C -0.101 4.101 18 C -0.069 4.069 19 N -0.269 5.269 20 C -0.123 4.123 21 C -0.127 4.127 22 C -0.155 4.155 23 C -0.014 4.014 24 H 0.031 0.969 25 H 0.107 0.893 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.086 0.914 38 H 0.041 0.959 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.492 5.482 18.113 19.244 hybrid contribution 0.131 0.623 -0.615 0.885 sum 3.623 6.105 17.498 18.883 Atomic orbital electron populations 1.21693 0.96256 1.01023 0.99562 1.18875 0.94179 0.96588 0.89394 0.93368 1.21137 1.31035 1.12530 0.89122 0.91088 1.24933 0.95143 0.95042 0.99035 1.69885 1.37230 1.23074 1.23461 0.86470 0.79454 0.79273 0.82119 1.20660 1.21322 1.19793 1.21987 0.75662 0.86698 0.84252 1.90510 1.46600 1.19807 1.85524 1.48332 1.69266 1.11510 1.07104 1.21657 0.95846 0.81389 1.02294 1.21973 1.00217 0.98748 0.96012 1.21169 0.97826 0.95616 0.95497 1.22226 0.99886 0.95634 0.89116 1.61951 1.03785 1.58180 1.02963 1.22369 0.93460 0.96920 0.99596 1.22443 0.93290 0.99187 0.97808 1.21827 0.98391 0.94649 1.00630 1.21452 0.96783 0.97130 0.86050 0.96896 0.89268 0.94709 0.93023 0.92489 0.88381 0.91295 0.91274 0.91147 0.94895 0.90715 0.91527 0.95900 0.91364 0.95887 0.90870 0.91608 0.91998 0.90332 0.92903 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.66 37.16 0.32 -2.71 16 2 C 0.03 0.77 1.79 -92.92 -0.17 0.61 16 3 H 0.05 1.23 6.47 -51.93 -0.34 0.90 16 4 C -0.50 -14.42 8.35 -34.44 -0.29 -14.71 16 5 H 0.07 2.17 6.89 -52.48 -0.36 1.81 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -25.28 11.40 55.43 0.63 -24.65 16 8 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.52 12.41 6.86 -10.98 -0.08 12.34 16 13 O -0.55 -14.84 15.05 5.56 0.08 -14.76 16 14 N -0.63 -11.63 2.97 -172.76 -0.51 -12.14 16 15 C 0.11 1.71 5.51 -3.71 -0.02 1.68 16 16 C -0.13 -1.63 5.36 -26.61 -0.14 -1.77 16 17 C -0.08 -0.93 2.07 -90.58 -0.19 -1.12 16 18 C 0.06 0.60 4.35 -3.83 -0.02 0.58 16 19 N -0.55 -5.31 4.45 -251.26 -1.12 -6.43 16 20 C 0.02 0.20 9.57 60.07 0.57 0.78 16 21 C 0.02 0.18 9.41 60.06 0.57 0.74 16 22 C -0.12 -1.54 5.26 -26.61 -0.14 -1.68 16 23 C 0.11 1.73 6.44 -3.71 -0.02 1.71 16 24 H 0.01 0.25 7.29 -51.93 -0.38 -0.13 16 25 H 0.09 2.27 6.28 -51.93 -0.33 1.94 16 26 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 29 H 0.10 1.66 5.38 -51.93 -0.28 1.38 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.77 6.26 -51.92 -0.33 0.45 16 33 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 34 H 0.07 0.79 8.06 -51.93 -0.42 0.37 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 38 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.07 0.63 6.21 -51.93 -0.32 0.31 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 0.97 7.72 -51.93 -0.40 0.57 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.09 1.55 7.00 -51.93 -0.36 1.19 16 LS Contribution 337.19 15.07 5.08 5.08 Total: -1.00 -31.29 337.19 -8.27 -39.56 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -7.72 Total: -1.71 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 0.31 Total: -1.98 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: -1.00 Total: -43.22 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.08 Total: -14.76 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.29 -8.27 -39.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597221992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.024 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds