Wall clock time and date at job start Mon Mar 30 2020 05:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47088 * 2 1 4 4 C 1.50692 * 109.47381 * 240.00009 * 2 1 3 5 5 H 1.08008 * 120.00039 * 240.00097 * 4 2 1 6 6 C 1.37878 * 120.00166 * 59.99740 * 4 2 1 7 7 N 1.31513 * 119.99882 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99959 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47201 * 90.00051 * 8 6 4 10 10 H 1.48498 * 109.46974 * 209.99999 * 8 6 4 11 11 H 1.48504 * 109.47345 * 330.00136 * 8 6 4 12 12 C 1.50705 * 109.47010 * 119.99592 * 2 1 3 13 13 O 1.21279 * 119.99524 * 102.66989 * 12 2 1 14 14 N 1.34777 * 120.00049 * 282.67229 * 12 2 1 15 15 C 1.46922 * 120.62987 * 354.78356 * 14 12 2 16 16 C 1.53198 * 108.77414 * 233.58703 * 15 14 12 17 17 C 1.53032 * 109.31474 * 305.36755 * 16 15 14 18 18 C 1.52994 * 109.46120 * 181.38758 * 17 16 15 19 19 N 1.46903 * 109.47178 * 174.99755 * 18 17 16 20 20 C 1.46902 * 110.99998 * 169.99609 * 19 18 17 21 21 C 1.46899 * 111.00453 * 293.95223 * 19 18 17 22 22 C 1.53042 * 109.54132 * 61.36367 * 17 16 15 23 23 C 1.46927 * 120.63096 * 174.76521 * 14 12 2 24 24 H 1.08995 * 109.47358 * 293.25333 * 1 2 3 25 25 H 1.08992 * 109.46994 * 53.25660 * 1 2 3 26 26 H 1.09004 * 109.46986 * 173.25442 * 1 2 3 27 27 H 0.97000 * 119.99683 * 180.02562 * 7 6 4 28 28 H 1.09008 * 109.58656 * 113.80293 * 15 14 12 29 29 H 1.08995 * 109.70835 * 353.44475 * 15 14 12 30 30 H 1.09005 * 109.49226 * 185.41641 * 16 15 14 31 31 H 1.08998 * 109.49828 * 65.32418 * 16 15 14 32 32 H 1.09008 * 109.45858 * 301.35716 * 17 16 15 33 33 H 1.08996 * 109.47561 * 54.99996 * 18 17 16 34 34 H 1.08998 * 109.47358 * 294.99840 * 18 17 16 35 35 H 1.09000 * 109.47107 * 179.97438 * 20 19 18 36 36 H 1.09001 * 109.46787 * 60.00157 * 20 19 18 37 37 H 1.09002 * 109.47217 * 300.00306 * 20 19 18 38 38 H 1.09002 * 109.47021 * 296.04735 * 21 19 18 39 39 H 1.09000 * 109.46544 * 56.04135 * 21 19 18 40 40 H 1.08997 * 109.47358 * 176.04126 * 21 19 18 41 41 H 1.09002 * 109.49297 * 58.58301 * 22 17 16 42 42 H 1.08999 * 109.50077 * 178.68664 * 22 17 16 43 43 H 1.08998 * 109.58357 * 246.20055 * 23 14 12 44 44 H 1.09003 * 109.58529 * 6.47907 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6295 -1.7584 -3.7121 12 6 2.0324 -0.7103 1.2306 13 8 2.4516 -1.8453 1.1468 14 7 2.0156 -0.0844 2.4240 15 6 1.6183 1.3266 2.5238 16 6 2.7213 2.0988 3.2546 17 6 3.0017 1.4281 4.6012 18 6 4.0785 2.2167 5.3491 19 7 4.2626 1.6443 6.6894 20 6 5.4439 2.2169 7.3487 21 6 3.0592 1.8302 7.5112 22 6 3.4880 -0.0042 4.3683 23 6 2.3937 -0.8002 3.6501 24 1 -0.3634 0.4057 0.9441 25 1 -0.3633 0.6147 -0.8234 26 1 -0.3633 -1.0206 -0.1207 27 1 0.7090 1.1613 -3.4844 28 1 0.6856 1.4050 3.0825 29 1 1.4820 1.7415 1.5252 30 1 2.3973 3.1263 3.4204 31 1 3.6287 2.0960 2.6508 32 1 2.0875 1.4090 5.1947 33 1 3.7701 3.2583 5.4382 34 1 5.0175 2.1617 4.7984 35 1 5.5565 1.7761 8.3392 36 1 5.3199 3.2956 7.4434 37 1 6.3314 2.0040 6.7528 38 1 2.8889 2.8950 7.6703 39 1 2.1996 1.3973 6.9997 40 1 3.1963 1.3364 8.4732 41 1 4.3882 0.0127 3.7539 42 1 3.7097 -0.4736 5.3267 43 1 1.5243 -0.8953 4.3006 44 1 2.7684 -1.7913 3.3939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597221992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:03 Heat of formation + Delta-G solvation = -61.428961 kcal Electronic energy + Delta-G solvation = -21530.208075 eV Core-core repulsion = 18481.247819 eV Total energy + Delta-G solvation = -3048.960256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.14356 -39.27776 -37.41493 -35.83575 -34.04170 -32.70089 -31.58140 -28.68664 -28.41999 -27.23997 -25.43615 -24.56978 -23.50597 -22.29089 -21.05916 -19.83306 -18.40071 -17.69659 -16.95966 -16.47459 -16.22305 -16.17486 -15.91458 -15.74754 -14.99701 -14.88078 -14.58963 -14.19869 -14.09475 -13.85353 -13.53749 -13.15480 -13.09717 -12.98448 -12.78727 -12.66381 -12.60199 -12.56505 -12.39859 -12.26071 -12.09813 -12.00737 -11.57096 -11.42911 -11.26434 -10.99925 -10.58990 -10.19993 -9.47198 -9.21935 -8.15772 -6.25186 1.39789 1.40746 1.52313 1.92911 2.24419 2.47033 3.05860 3.14013 3.77186 3.81700 3.96705 4.15513 4.25800 4.32945 4.39858 4.45400 4.51743 4.57378 4.62478 4.66099 4.73402 4.80413 4.84371 4.89497 4.91704 4.96743 5.01099 5.04625 5.06044 5.10161 5.14008 5.21120 5.25023 5.47919 5.51572 5.72340 5.78152 5.95304 6.13652 6.16947 6.20218 6.63265 6.81927 7.39843 7.52829 8.90655 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036157 B = 0.003998 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.225137 B = 7001.494058 C = 7045.317613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.029 3.971 3 H 0.044 0.956 4 C -0.532 4.532 5 H 0.042 0.958 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.272 1.272 11 H -0.279 1.279 12 C 0.518 3.482 13 O -0.594 6.594 14 N -0.617 5.617 15 C 0.104 3.896 16 C -0.124 4.124 17 C -0.074 4.074 18 C 0.065 3.935 19 N -0.560 5.560 20 C 0.025 3.975 21 C 0.021 3.979 22 C -0.104 4.104 23 C 0.106 3.894 24 H 0.047 0.953 25 H 0.072 0.928 26 H 0.016 0.984 27 H 0.266 0.734 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.028 0.972 37 H 0.065 0.935 38 H 0.028 0.972 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.040 0.960 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.842 7.945 19.981 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.008 3.992 3 H 0.062 0.938 4 C -0.570 4.570 5 H 0.061 0.939 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.201 1.201 10 H -0.196 1.196 11 H -0.204 1.204 12 C 0.309 3.691 13 O -0.475 6.475 14 N -0.351 5.351 15 C -0.018 4.018 16 C -0.162 4.162 17 C -0.093 4.093 18 C -0.063 4.063 19 N -0.284 5.284 20 C -0.123 4.123 21 C -0.127 4.127 22 C -0.143 4.143 23 C -0.016 4.016 24 H 0.066 0.934 25 H 0.091 0.909 26 H 0.035 0.965 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.067 6.974 19.767 21.185 hybrid contribution 0.256 0.212 -1.044 1.095 sum 3.323 7.186 18.724 20.329 Atomic orbital electron populations 1.21492 0.95139 0.99693 1.00701 1.18786 0.95047 0.95977 0.89397 0.93782 1.21268 1.31887 1.12487 0.91373 0.93941 1.25561 0.95155 0.95709 1.01258 1.69946 1.37107 1.23396 1.24342 0.85622 0.78596 0.78603 0.79219 1.20124 1.19641 1.20441 1.21676 0.75772 0.86133 0.85528 1.90479 1.48921 1.21625 1.86455 1.48302 1.67541 1.12859 1.06355 1.21924 0.98243 0.79376 1.02289 1.21924 0.98413 0.99981 0.95904 1.21103 0.98928 0.94062 0.95175 1.22097 0.98945 0.95908 0.89337 1.61941 1.04785 1.58668 1.03028 1.22389 0.92774 0.97278 0.99865 1.22472 0.92639 0.99669 0.97933 1.21717 0.96439 0.95872 1.00243 1.21652 0.98679 0.96078 0.85211 0.93422 0.90930 0.96454 0.92524 0.89651 0.90203 0.88327 0.92982 0.89598 0.93807 0.91537 0.90609 0.95354 0.91634 0.95329 0.90917 0.90838 0.94063 0.89018 0.90282 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.36 8.66 71.98 0.62 -4.74 16 2 C 0.03 1.50 1.79 -12.29 -0.02 1.48 16 3 H 0.04 2.30 6.47 -2.39 -0.02 2.29 16 4 C -0.53 -31.69 8.35 25.60 0.21 -31.48 16 5 H 0.04 2.72 6.89 -2.91 -0.02 2.70 16 6 C 0.02 1.28 5.30 84.66 0.45 1.73 16 7 N -0.91 -51.29 11.40 21.45 0.24 -51.04 16 8 Si 0.95 45.60 29.54 68.60 2.03 47.63 16 9 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 12 C 0.52 25.22 6.86 87.66 0.60 25.82 16 13 O -0.59 -33.59 15.05 -3.03 -0.05 -33.63 16 14 N -0.62 -22.61 2.97 -818.89 -2.43 -25.05 16 15 C 0.10 2.97 5.51 86.37 0.48 3.45 16 16 C -0.12 -2.78 5.36 30.67 0.16 -2.62 16 17 C -0.07 -1.47 2.07 -10.77 -0.02 -1.49 16 18 C 0.07 1.15 4.35 86.30 0.38 1.52 16 19 N -0.56 -9.40 4.45 -948.85 -4.22 -13.62 16 20 C 0.02 0.35 9.57 127.69 1.22 1.57 16 21 C 0.02 0.28 9.41 127.69 1.20 1.48 16 22 C -0.10 -2.61 5.26 30.67 0.16 -2.45 16 23 C 0.11 3.28 6.44 86.36 0.56 3.84 16 24 H 0.05 1.88 7.29 -2.39 -0.02 1.86 16 25 H 0.07 3.70 6.28 -2.39 -0.02 3.69 16 26 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.08 2.62 5.38 -2.39 -0.01 2.61 16 30 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.52 6.26 -2.38 -0.01 1.51 16 33 H 0.04 0.70 8.12 -2.39 -0.02 0.68 16 34 H 0.07 1.29 8.06 -2.39 -0.02 1.27 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.06 0.93 8.12 -2.39 -0.02 0.91 16 38 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.07 0.99 6.21 -2.39 -0.01 0.97 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.09 2.09 7.72 -2.39 -0.02 2.07 16 43 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.06 2.18 7.00 -2.39 -0.02 2.16 16 Total: -1.00 -69.08 337.19 2.52 -66.56 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.95 Total: 11.04 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 6.00 Total: -1.89 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -6.41 Total: -89.71 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.05 Total: -33.63 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -69.08 2.52 -66.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597221992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.126 kcal (2) G-P(sol) polarization free energy of solvation -69.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds