Wall clock time and date at job start Mon Mar 30 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46869 * 2 1 4 4 C 1.50701 * 109.47131 * 239.99552 * 2 1 3 5 5 H 1.07994 * 119.99783 * 240.00152 * 4 2 1 6 6 C 1.37876 * 119.99871 * 60.00378 * 4 2 1 7 7 N 1.31515 * 120.00106 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99915 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46933 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47199 * 119.99995 * 8 6 4 11 11 H 1.48496 * 109.47295 * 239.99625 * 8 6 4 12 12 C 1.50699 * 109.47035 * 119.99387 * 2 1 3 13 13 O 1.21284 * 119.99556 * 105.08586 * 12 2 1 14 14 N 1.34776 * 120.00181 * 285.09266 * 12 2 1 15 15 C 1.47601 * 118.64228 * 356.55567 * 14 12 2 16 16 C 1.53947 * 112.14279 * 137.86813 * 15 14 12 17 17 C 1.50875 * 110.09309 * 319.43672 * 16 15 14 18 18 C 1.52570 * 109.34869 * 91.89075 * 17 16 15 19 19 H 1.09000 * 108.51014 * 36.23030 * 18 17 16 20 20 N 1.46907 * 108.51059 * 153.71766 * 18 17 16 21 21 C 1.46899 * 110.99963 * 68.98919 * 20 18 17 22 22 C 1.46900 * 110.99386 * 192.94182 * 20 18 17 23 23 C 1.47162 * 114.31976 * 274.97806 * 18 17 16 24 24 C 1.44579 * 118.64141 * 176.58251 * 14 12 2 25 25 H 1.09004 * 109.47383 * 304.14155 * 1 2 3 26 26 H 1.09007 * 109.47069 * 64.13892 * 1 2 3 27 27 H 1.08996 * 109.47497 * 184.14082 * 1 2 3 28 28 H 0.97002 * 120.00448 * 180.02562 * 7 6 4 29 29 H 1.09000 * 108.95042 * 258.55463 * 15 14 12 30 30 H 1.09001 * 108.94846 * 17.27391 * 15 14 12 31 31 H 1.08991 * 109.36576 * 79.63309 * 16 15 14 32 32 H 1.09010 * 109.36478 * 199.24798 * 16 15 14 33 33 H 1.09003 * 109.49404 * 211.85067 * 17 16 15 34 34 H 1.09000 * 109.49605 * 331.92700 * 17 16 15 35 35 H 1.08998 * 109.47415 * 59.99599 * 21 20 18 36 36 H 1.08999 * 109.47201 * 179.97438 * 21 20 18 37 37 H 1.09006 * 109.47026 * 299.99506 * 21 20 18 38 38 H 1.08997 * 109.47293 * 63.88820 * 22 20 18 39 39 H 1.08999 * 109.46564 * 183.88770 * 22 20 18 40 40 H 1.08999 * 109.47027 * 303.88346 * 22 20 18 41 41 H 1.09003 * 109.33853 * 302.55485 * 23 18 17 42 42 H 1.09002 * 109.33422 * 183.07208 * 23 18 17 43 43 H 1.09000 * 109.44783 * 30.75161 * 24 14 12 44 44 H 1.08998 * 109.45230 * 150.69980 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 3.1484 -2.2858 -3.6035 10 1 1.1678 -1.5868 -4.8164 11 1 3.1473 -0.1861 -4.8160 12 6 2.0323 -0.7103 1.2305 13 8 2.4922 -1.8289 1.1397 14 7 1.9704 -0.1026 2.4319 15 6 1.4768 1.2869 2.4973 16 6 0.5277 1.5101 3.6887 17 6 -0.3916 0.3244 3.8483 18 6 0.2351 -0.6744 4.8165 19 1 0.7578 -0.1196 5.5957 20 7 -0.8409 -1.4517 5.4459 21 6 -1.4853 -2.3431 4.4722 22 6 -0.3376 -2.2086 6.5999 23 6 1.1841 -1.6100 4.1922 24 6 2.3908 -0.8384 3.6033 25 1 -0.3634 0.5768 0.8506 26 1 -0.3633 0.4483 -0.9248 27 1 -0.3634 -1.0249 0.0742 28 1 0.7082 1.1607 -3.4845 29 1 2.3281 1.9610 2.5920 30 1 0.9444 1.5172 1.5745 31 1 1.1138 1.6381 4.5986 32 1 -0.0664 2.4073 3.5144 33 1 -1.3516 0.6588 4.2415 34 1 -0.5412 -0.1528 2.8798 35 1 -0.7459 -3.0339 4.0671 36 1 -2.2776 -2.9070 4.9645 37 1 -1.9104 -1.7499 3.6624 38 1 0.0085 -1.5152 7.3663 39 1 -1.1378 -2.8281 7.0050 40 1 0.4898 -2.8443 6.2846 41 1 0.6807 -2.1560 3.3943 42 1 1.5392 -2.3174 4.9416 43 1 3.1733 -1.5450 3.3265 44 1 2.7765 -0.1437 4.3493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597567068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:40 Heat of formation + Delta-G solvation = -26.865982 kcal Electronic energy + Delta-G solvation = -22448.238599 eV Core-core repulsion = 19400.777107 eV Total energy + Delta-G solvation = -3047.461492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.18590 -38.32734 -35.66265 -33.90848 -32.52611 -31.81298 -30.13689 -27.75548 -26.64608 -25.22665 -25.09247 -23.55479 -22.09125 -20.81274 -19.62995 -18.10837 -16.46479 -16.41395 -15.70295 -15.46827 -14.95762 -14.75263 -14.60471 -14.30565 -13.71875 -13.46705 -13.29696 -12.93703 -12.59558 -12.56522 -12.17241 -11.91607 -11.76337 -11.54955 -11.46657 -11.10009 -11.01050 -10.84867 -10.73340 -10.64112 -10.57559 -10.51202 -10.27035 -10.18439 -9.95821 -8.95147 -8.56685 -8.34296 -8.27557 -7.95315 -6.02261 -4.05180 3.32434 3.40063 3.48095 3.67750 3.76255 3.97597 4.47592 4.67520 4.96494 5.08383 5.19986 5.24796 5.28641 5.31091 5.39364 5.43386 5.51762 5.55468 5.67448 5.73154 5.81456 5.84314 5.92621 5.95332 6.02195 6.13869 6.23140 6.27310 6.36756 6.42053 6.46182 6.66062 6.87054 6.97285 7.03075 7.06703 7.27586 7.46864 7.77682 7.98865 8.11939 8.40684 9.02924 9.26351 9.60167 11.05046 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028969 B = 0.005213 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.304433 B = 5370.245321 C = 5490.114495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.029 3.971 3 H 0.048 0.952 4 C -0.498 4.498 5 H 0.071 0.929 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.518 3.482 13 O -0.546 6.546 14 N -0.620 5.620 15 C 0.102 3.898 16 C -0.127 4.127 17 C -0.107 4.107 18 C 0.091 3.909 19 H 0.071 0.929 20 N -0.544 5.544 21 C 0.017 3.983 22 C 0.019 3.981 23 C -0.170 4.170 24 C 0.125 3.875 25 H 0.019 0.981 26 H 0.095 0.905 27 H 0.028 0.972 28 H 0.260 0.740 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.032 0.968 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.029 0.971 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.288 0.768 16.078 16.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.008 3.992 3 H 0.066 0.934 4 C -0.537 4.537 5 H 0.090 0.910 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 C 0.309 3.691 13 O -0.422 6.422 14 N -0.355 5.355 15 C -0.021 4.021 16 C -0.166 4.166 17 C -0.145 4.145 18 C -0.017 4.017 19 H 0.089 0.911 20 N -0.267 5.267 21 C -0.131 4.131 22 C -0.129 4.129 23 C -0.210 4.210 24 C 0.000 4.000 25 H 0.037 0.963 26 H 0.113 0.887 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.472 0.602 16.078 16.460 hybrid contribution 0.879 -0.990 -0.993 1.655 sum -2.593 -0.388 15.085 15.311 Atomic orbital electron populations 1.21805 0.96365 0.99175 1.01782 1.18871 0.94148 0.96692 0.89463 0.93427 1.21179 1.30807 1.12553 0.89115 0.91047 1.24932 0.95163 0.95071 0.99046 1.69867 1.37183 1.23141 1.23388 0.86430 0.78650 0.79791 0.82587 1.19630 1.21034 1.21061 1.22042 0.76060 0.86367 0.84614 1.90517 1.45238 1.20427 1.86038 1.47913 1.66476 1.14200 1.06931 1.22087 0.97271 0.82206 1.00494 1.21698 0.97799 0.98652 0.98433 1.21106 0.98624 0.95205 0.99602 1.20667 0.90420 0.94355 0.96270 0.91071 1.62485 1.29626 1.25916 1.08704 1.22442 0.98484 0.96129 0.96042 1.22422 0.99195 0.97580 0.93717 1.21934 0.98467 0.99432 1.01131 1.21081 0.95809 0.95380 0.87737 0.96267 0.88669 0.95306 0.93034 0.92658 0.88158 0.92100 0.90610 0.90985 0.91037 0.94964 0.91949 0.91061 0.91660 0.91779 0.95286 0.90839 0.91582 0.90362 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.67 37.16 0.32 -2.75 16 2 C 0.03 0.73 1.76 -92.92 -0.16 0.56 16 3 H 0.05 1.21 7.04 -51.93 -0.37 0.84 16 4 C -0.50 -14.18 8.36 -34.44 -0.29 -14.47 16 5 H 0.07 2.16 6.85 -52.49 -0.36 1.80 16 6 C 0.06 1.62 5.29 -17.82 -0.09 1.52 16 7 N -0.90 -24.99 11.29 55.43 0.63 -24.37 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.52 11.91 6.83 -10.99 -0.07 11.83 16 13 O -0.55 -14.37 15.00 5.55 0.08 -14.29 16 14 N -0.62 -11.05 2.24 -172.54 -0.39 -11.44 16 15 C 0.10 1.53 5.48 -2.95 -0.02 1.51 16 16 C -0.13 -1.51 5.71 -27.30 -0.16 -1.67 16 17 C -0.11 -1.39 4.12 -28.02 -0.12 -1.51 16 18 C 0.09 1.13 1.67 -70.73 -0.12 1.01 16 19 H 0.07 0.84 7.26 -51.93 -0.38 0.46 16 20 N -0.54 -6.54 4.85 -246.89 -1.20 -7.73 16 21 C 0.02 0.21 8.83 60.06 0.53 0.74 16 22 C 0.02 0.19 9.38 60.06 0.56 0.76 16 23 C -0.17 -2.39 4.28 -28.55 -0.12 -2.51 16 24 C 0.13 1.93 5.41 -4.08 -0.02 1.91 16 25 H 0.02 0.37 5.37 -51.93 -0.28 0.09 16 26 H 0.09 2.42 5.97 -51.93 -0.31 2.11 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.10 1.68 4.14 -51.93 -0.21 1.47 16 31 H 0.06 0.65 7.32 -51.93 -0.38 0.27 16 32 H 0.08 0.80 8.14 -51.92 -0.42 0.37 16 33 H 0.07 0.90 8.05 -51.93 -0.42 0.48 16 34 H 0.07 1.12 6.32 -51.93 -0.33 0.79 16 35 H 0.03 0.43 6.26 -51.93 -0.32 0.10 16 36 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 37 H 0.07 0.92 7.15 -51.93 -0.37 0.55 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.58 8.05 -51.93 -0.42 0.16 16 40 H 0.03 0.30 6.21 -51.93 -0.32 -0.03 16 41 H 0.07 1.25 6.36 -51.93 -0.33 0.92 16 42 H 0.07 0.85 6.15 -51.93 -0.32 0.53 16 43 H 0.08 1.36 7.25 -51.93 -0.38 0.98 16 44 H 0.06 0.82 8.07 -51.93 -0.42 0.40 16 LS Contribution 322.79 15.07 4.86 4.86 Total: -1.00 -30.51 322.79 -7.94 -38.46 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.16 Total: 0.74 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 0.25 Total: -3.06 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: -0.96 Total: -43.54 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.08 Total: -14.29 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.51 -7.94 -38.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597567068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.593 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds