Wall clock time and date at job start Mon Mar 30 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46869 * 2 1 4 4 C 1.50701 * 109.47131 * 239.99552 * 2 1 3 5 5 H 1.07994 * 119.99783 * 240.00152 * 4 2 1 6 6 C 1.37876 * 119.99871 * 60.00378 * 4 2 1 7 7 N 1.31515 * 120.00106 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99915 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46933 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47199 * 119.99995 * 8 6 4 11 11 H 1.48496 * 109.47295 * 239.99625 * 8 6 4 12 12 C 1.50699 * 109.47035 * 119.99387 * 2 1 3 13 13 O 1.21284 * 119.99556 * 105.08586 * 12 2 1 14 14 N 1.34776 * 120.00181 * 285.09266 * 12 2 1 15 15 C 1.47601 * 118.64228 * 356.55567 * 14 12 2 16 16 C 1.53947 * 112.14279 * 137.86813 * 15 14 12 17 17 C 1.50875 * 110.09309 * 319.43672 * 16 15 14 18 18 C 1.52570 * 109.34869 * 91.89075 * 17 16 15 19 19 H 1.09000 * 108.51014 * 36.23030 * 18 17 16 20 20 N 1.46907 * 108.51059 * 153.71766 * 18 17 16 21 21 C 1.46899 * 110.99963 * 68.98919 * 20 18 17 22 22 C 1.46900 * 110.99386 * 192.94182 * 20 18 17 23 23 C 1.47162 * 114.31976 * 274.97806 * 18 17 16 24 24 C 1.44579 * 118.64141 * 176.58251 * 14 12 2 25 25 H 1.09004 * 109.47383 * 304.14155 * 1 2 3 26 26 H 1.09007 * 109.47069 * 64.13892 * 1 2 3 27 27 H 1.08996 * 109.47497 * 184.14082 * 1 2 3 28 28 H 0.97002 * 120.00448 * 180.02562 * 7 6 4 29 29 H 1.09000 * 108.95042 * 258.55463 * 15 14 12 30 30 H 1.09001 * 108.94846 * 17.27391 * 15 14 12 31 31 H 1.08991 * 109.36576 * 79.63309 * 16 15 14 32 32 H 1.09010 * 109.36478 * 199.24798 * 16 15 14 33 33 H 1.09003 * 109.49404 * 211.85067 * 17 16 15 34 34 H 1.09000 * 109.49605 * 331.92700 * 17 16 15 35 35 H 1.08998 * 109.47415 * 59.99599 * 21 20 18 36 36 H 1.08999 * 109.47201 * 179.97438 * 21 20 18 37 37 H 1.09006 * 109.47026 * 299.99506 * 21 20 18 38 38 H 1.08997 * 109.47293 * 63.88820 * 22 20 18 39 39 H 1.08999 * 109.46564 * 183.88770 * 22 20 18 40 40 H 1.08999 * 109.47027 * 303.88346 * 22 20 18 41 41 H 1.09003 * 109.33853 * 302.55485 * 23 18 17 42 42 H 1.09002 * 109.33422 * 183.07208 * 23 18 17 43 43 H 1.09000 * 109.44783 * 30.75161 * 24 14 12 44 44 H 1.08998 * 109.45230 * 150.69980 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 3.1484 -2.2858 -3.6035 10 1 1.1678 -1.5868 -4.8164 11 1 3.1473 -0.1861 -4.8160 12 6 2.0323 -0.7103 1.2305 13 8 2.4922 -1.8289 1.1397 14 7 1.9704 -0.1026 2.4319 15 6 1.4768 1.2869 2.4973 16 6 0.5277 1.5101 3.6887 17 6 -0.3916 0.3244 3.8483 18 6 0.2351 -0.6744 4.8165 19 1 0.7578 -0.1196 5.5957 20 7 -0.8409 -1.4517 5.4459 21 6 -1.4853 -2.3431 4.4722 22 6 -0.3376 -2.2086 6.5999 23 6 1.1841 -1.6100 4.1922 24 6 2.3908 -0.8384 3.6033 25 1 -0.3634 0.5768 0.8506 26 1 -0.3633 0.4483 -0.9248 27 1 -0.3634 -1.0249 0.0742 28 1 0.7082 1.1607 -3.4845 29 1 2.3281 1.9610 2.5920 30 1 0.9444 1.5172 1.5745 31 1 1.1138 1.6381 4.5986 32 1 -0.0664 2.4073 3.5144 33 1 -1.3516 0.6588 4.2415 34 1 -0.5412 -0.1528 2.8798 35 1 -0.7459 -3.0339 4.0671 36 1 -2.2776 -2.9070 4.9645 37 1 -1.9104 -1.7499 3.6624 38 1 0.0085 -1.5152 7.3663 39 1 -1.1378 -2.8281 7.0050 40 1 0.4898 -2.8443 6.2846 41 1 0.6807 -2.1560 3.3943 42 1 1.5392 -2.3174 4.9416 43 1 3.1733 -1.5450 3.3265 44 1 2.7765 -0.1437 4.3493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597567068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:39 Heat of formation + Delta-G solvation = -46.576358 kcal Electronic energy + Delta-G solvation = -22449.093305 eV Core-core repulsion = 19400.777107 eV Total energy + Delta-G solvation = -3048.316199 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.54716 -39.70845 -37.02615 -35.90622 -33.76550 -33.29708 -31.87944 -28.66641 -27.87849 -27.28901 -26.29678 -24.93146 -23.53293 -22.21168 -20.67176 -19.64687 -18.36448 -17.90908 -17.26375 -16.81638 -16.49764 -16.09676 -15.80234 -15.62151 -15.00147 -14.89297 -14.64485 -14.46251 -14.08839 -13.87888 -13.48027 -13.22558 -12.99203 -12.89540 -12.72477 -12.65948 -12.58352 -12.54337 -12.29655 -12.25536 -12.05371 -11.83651 -11.68541 -11.62338 -11.33661 -11.04225 -10.59196 -10.21573 -9.53718 -9.19939 -8.16008 -6.26337 1.37432 1.39529 1.52713 1.91677 2.24621 2.46258 3.04206 3.12983 3.61518 3.85956 4.02645 4.06571 4.20169 4.27831 4.32022 4.41819 4.45051 4.50675 4.61422 4.65185 4.66479 4.74911 4.76113 4.85968 4.94052 4.98447 4.99738 5.04008 5.07181 5.11310 5.18666 5.24933 5.36103 5.43611 5.45854 5.70814 5.83423 5.99686 6.07857 6.16342 6.19947 6.58409 6.81178 7.39251 7.53232 8.89651 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028969 B = 0.005213 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.304433 B = 5370.245321 C = 5490.114495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.029 3.971 3 H 0.041 0.959 4 C -0.529 4.529 5 H 0.042 0.958 6 C 0.022 3.978 7 N -0.908 5.908 8 Si 0.953 3.047 9 H -0.282 1.282 10 H -0.274 1.274 11 H -0.271 1.271 12 C 0.515 3.485 13 O -0.592 6.592 14 N -0.607 5.607 15 C 0.095 3.905 16 C -0.116 4.116 17 C -0.105 4.105 18 C 0.093 3.907 19 H 0.094 0.906 20 N -0.546 5.546 21 C 0.020 3.980 22 C 0.018 3.982 23 C -0.157 4.157 24 C 0.121 3.879 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.012 0.988 28 H 0.265 0.735 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.015 0.985 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.024 0.976 41 H 0.036 0.964 42 H 0.080 0.920 43 H 0.054 0.946 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.656 2.118 18.110 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.008 3.992 3 H 0.059 0.941 4 C -0.567 4.567 5 H 0.060 0.940 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.196 1.196 12 C 0.306 3.694 13 O -0.472 6.472 14 N -0.339 5.339 15 C -0.027 4.027 16 C -0.155 4.155 17 C -0.143 4.143 18 C -0.015 4.015 19 H 0.112 0.888 20 N -0.269 5.269 21 C -0.128 4.128 22 C -0.130 4.130 23 C -0.197 4.197 24 C -0.003 4.003 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.033 0.967 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.043 0.957 41 H 0.055 0.945 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.860 2.000 18.151 18.664 hybrid contribution 0.983 -1.389 -1.574 2.318 sum -2.877 0.610 16.577 16.836 Atomic orbital electron populations 1.21579 0.95271 0.98435 1.02059 1.18765 0.94972 0.95924 0.89586 0.94071 1.21297 1.31618 1.12453 0.91381 0.93980 1.25553 0.95189 0.95736 1.01247 1.69933 1.37063 1.23478 1.24264 0.85583 0.78386 0.78600 0.79551 1.20737 1.19950 1.19649 1.21682 0.76046 0.85769 0.85907 1.90486 1.47548 1.22223 1.86949 1.47838 1.64899 1.15181 1.06003 1.22327 0.98633 0.80427 1.01309 1.21679 0.97221 0.98828 0.97749 1.21079 0.99573 0.95586 0.98074 1.20658 0.90245 0.94073 0.96532 0.88823 1.62523 1.29428 1.26129 1.08818 1.22398 0.98512 0.95820 0.96080 1.22506 0.99454 0.97907 0.93155 1.21827 0.97942 0.99663 1.00245 1.21293 0.95889 0.95770 0.87365 0.92870 0.90842 0.96894 0.92526 0.90708 0.90280 0.89508 0.88472 0.90030 0.94322 0.96692 0.90314 0.92318 0.90075 0.90762 0.95700 0.94496 0.90196 0.92786 0.87832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.67 71.98 0.62 -4.85 16 2 C 0.03 1.47 1.76 -12.29 -0.02 1.45 16 3 H 0.04 2.14 7.04 -2.39 -0.02 2.13 16 4 C -0.53 -31.31 8.36 25.60 0.21 -31.10 16 5 H 0.04 2.69 6.85 -2.91 -0.02 2.67 16 6 C 0.02 1.25 5.29 84.65 0.45 1.69 16 7 N -0.91 -51.03 11.29 21.45 0.24 -50.79 16 8 Si 0.95 45.45 29.54 68.60 2.03 47.48 16 9 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 C 0.52 24.49 6.83 87.66 0.60 25.09 16 13 O -0.59 -32.78 15.00 -3.04 -0.05 -32.83 16 14 N -0.61 -21.35 2.24 -818.18 -1.83 -23.18 16 15 C 0.09 2.64 5.48 86.49 0.47 3.12 16 16 C -0.12 -2.33 5.71 30.22 0.17 -2.16 16 17 C -0.11 -2.48 4.12 29.76 0.12 -2.36 16 18 C 0.09 2.07 1.67 42.95 0.07 2.14 16 19 H 0.09 1.74 7.26 -2.39 -0.02 1.72 16 20 N -0.55 -11.83 4.85 -935.02 -4.54 -16.37 16 21 C 0.02 0.48 8.83 127.69 1.13 1.61 16 22 C 0.02 0.30 9.38 127.69 1.20 1.50 16 23 C -0.16 -4.26 4.28 29.42 0.13 -4.14 16 24 C 0.12 3.58 5.41 87.38 0.47 4.06 16 25 H 0.05 2.09 5.37 -2.38 -0.01 2.08 16 26 H 0.07 3.81 5.97 -2.38 -0.01 3.79 16 27 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 2.57 4.14 -2.39 -0.01 2.56 16 31 H 0.09 1.36 7.32 -2.39 -0.02 1.35 16 32 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.08 1.79 8.05 -2.39 -0.02 1.77 16 34 H 0.04 1.17 6.32 -2.39 -0.02 1.16 16 35 H 0.01 0.40 6.26 -2.39 -0.01 0.38 16 36 H 0.08 1.57 8.08 -2.39 -0.02 1.55 16 37 H 0.06 1.52 7.15 -2.38 -0.02 1.50 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.13 8.05 -2.39 -0.02 1.11 16 40 H 0.02 0.45 6.21 -2.39 -0.01 0.44 16 41 H 0.04 1.29 6.36 -2.39 -0.02 1.27 16 42 H 0.08 1.94 6.15 -2.39 -0.01 1.93 16 43 H 0.05 1.89 7.25 -2.39 -0.02 1.87 16 44 H 0.10 2.28 8.07 -2.39 -0.02 2.26 16 Total: -1.00 -68.73 322.79 2.46 -66.27 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.98 Total: 13.37 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 5.63 Total: -3.95 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -6.13 Total: -90.34 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.05 Total: -32.83 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -68.73 2.46 -66.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597567068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.696 kcal (2) G-P(sol) polarization free energy of solvation -68.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds