Wall clock time and date at job start Mon Mar 30 2020 05:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47177 * 2 1 4 4 C 1.50700 * 109.47143 * 119.99817 * 2 1 3 5 5 H 1.08002 * 120.00376 * 120.00641 * 4 2 1 6 6 C 1.37877 * 119.99942 * 300.00137 * 4 2 1 7 7 N 1.31519 * 120.00096 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00059 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47026 * 90.00307 * 8 6 4 10 10 H 1.48504 * 109.47244 * 210.00099 * 8 6 4 11 11 H 1.48496 * 109.47257 * 329.99968 * 8 6 4 12 12 C 1.50700 * 109.47308 * 239.99766 * 2 1 3 13 13 O 1.21286 * 120.00085 * 239.99627 * 12 2 1 14 14 N 1.34773 * 119.99920 * 60.00072 * 12 2 1 15 15 C 1.46498 * 120.00157 * 179.72501 * 14 12 2 16 16 C 1.53000 * 109.47277 * 172.74672 * 15 14 12 17 17 H 1.09000 * 112.95669 * 44.19071 * 16 15 14 18 18 C 1.53944 * 113.75877 * 175.83464 * 16 15 14 19 19 C 1.53934 * 86.33832 * 138.03742 * 18 16 15 20 20 N 1.47953 * 113.75901 * 272.39511 * 16 15 14 21 21 C 1.46903 * 110.99852 * 108.10049 * 20 16 15 22 22 C 1.52995 * 109.47206 * 64.19840 * 21 20 16 23 23 C 1.53003 * 109.47218 * 184.19950 * 21 20 16 24 24 C 1.52998 * 109.47348 * 304.19665 * 21 20 16 25 25 H 1.08999 * 109.47369 * 300.00172 * 1 2 3 26 26 H 1.09000 * 109.47206 * 60.00265 * 1 2 3 27 27 H 1.08996 * 109.47107 * 180.02562 * 1 2 3 28 28 H 0.97001 * 120.00254 * 180.02562 * 7 6 4 29 29 H 0.96997 * 119.99973 * 359.97438 * 14 12 2 30 30 H 1.09000 * 109.47272 * 292.74774 * 15 14 12 31 31 H 1.09001 * 109.47387 * 52.74357 * 15 14 12 32 32 H 1.08995 * 113.73156 * 252.39460 * 18 16 15 33 33 H 1.09002 * 113.73205 * 23.68378 * 18 16 15 34 34 H 1.08997 * 113.76022 * 90.59527 * 19 18 16 35 35 H 1.09000 * 113.76200 * 221.85603 * 19 18 16 36 36 H 1.09000 * 109.47357 * 77.94732 * 22 21 20 37 37 H 1.09004 * 109.47213 * 197.94886 * 22 21 20 38 38 H 1.09004 * 109.46866 * 317.94991 * 22 21 20 39 39 H 1.08996 * 109.47726 * 59.99668 * 23 21 20 40 40 H 1.08998 * 109.47390 * 180.02562 * 23 21 20 41 41 H 1.09009 * 109.46804 * 299.99777 * 23 21 20 42 42 H 1.09002 * 109.47418 * 81.39291 * 24 21 20 43 43 H 1.08994 * 109.47804 * 201.39848 * 24 21 20 44 44 H 1.09002 * 109.46959 * 321.39660 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 2.1380 -0.8589 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8745 2.6993 10 1 0.9771 1.9955 3.9070 11 1 0.8491 2.1774 1.4923 12 6 2.0323 -0.7105 -1.2304 13 8 2.7297 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.2001 -0.9371 -3.6507 16 6 1.5462 -0.3301 -4.8936 17 1 1.5219 0.7594 -4.8721 18 6 2.0720 -0.9127 -6.2181 19 6 0.6053 -0.9141 -6.6854 20 7 0.2512 -0.9509 -5.2492 21 6 -0.8657 -0.0418 -4.9589 22 6 -0.7564 1.1999 -5.8461 23 6 -2.1899 -0.7546 -5.2402 24 6 -0.8140 0.3762 -3.4880 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.9033 -0.5277 4.4376 29 1 1.1488 0.5384 -2.5435 30 1 3.2819 -0.8213 -3.7160 31 1 1.9512 -1.9966 -3.5898 32 1 2.7096 -0.2273 -6.7763 33 1 2.5017 -1.9095 -6.1190 34 1 0.3038 0.0046 -7.1885 35 1 0.3196 -1.8122 -7.2330 36 1 -1.1055 0.9607 -6.8506 37 1 -1.3691 1.9993 -5.4293 38 1 0.2833 1.5244 -5.8904 39 1 -2.2679 -1.6393 -4.6083 40 1 -3.0186 -0.0800 -5.0253 41 1 -2.2268 -1.0524 -6.2882 42 1 -0.0929 1.1843 -3.3650 43 1 -1.7997 0.7178 -3.1724 44 1 -0.5124 -0.4758 -2.8786 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597860012.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:50 Heat of formation + Delta-G solvation = 9.257444 kcal Electronic energy + Delta-G solvation = -22041.697563 eV Core-core repulsion = 18995.802499 eV Total energy + Delta-G solvation = -3045.895063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.07841 -38.69625 -35.27878 -34.06939 -33.75718 -31.21228 -28.54428 -27.75245 -27.54245 -27.00586 -25.07223 -23.69723 -21.92398 -20.76225 -19.38815 -18.61491 -16.74046 -16.49084 -16.33558 -15.40245 -15.17158 -14.79768 -14.50978 -14.28110 -14.02486 -13.83050 -13.13686 -12.93637 -12.86257 -12.70882 -12.35694 -12.23923 -11.99150 -11.79024 -11.68603 -11.52253 -11.32119 -11.19764 -11.12838 -10.92025 -10.72748 -10.56903 -10.50317 -10.23630 -9.59274 -9.04937 -8.84851 -8.60675 -8.53723 -8.39035 -6.00956 -4.00578 3.25512 3.32607 3.38357 3.61645 3.69813 3.86362 4.36578 4.41143 4.56692 4.60327 4.74186 4.85043 5.05495 5.09756 5.16781 5.27942 5.28524 5.34917 5.46075 5.54802 5.59341 5.62968 5.66456 5.76900 5.79583 5.85658 5.94249 5.96412 6.06069 6.13565 6.21529 6.23227 6.38990 6.44106 6.50919 6.76913 6.96540 7.10238 7.21367 7.59834 8.20190 8.61003 9.16697 9.23157 9.58522 11.12169 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027342 B = 0.005185 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.820807 B = 5399.213726 C = 6046.268278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.006 4.006 3 H 0.049 0.951 4 C -0.503 4.503 5 H 0.093 0.907 6 C 0.069 3.931 7 N -0.897 5.897 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.268 1.268 12 C 0.526 3.474 13 O -0.532 6.532 14 N -0.751 5.751 15 C 0.138 3.862 16 C 0.018 3.982 17 H 0.084 0.916 18 C -0.137 4.137 19 C -0.011 4.011 20 N -0.460 5.460 21 C 0.067 3.933 22 C -0.179 4.179 23 C -0.130 4.130 24 C -0.157 4.157 25 H 0.048 0.952 26 H 0.033 0.967 27 H 0.058 0.942 28 H 0.264 0.736 29 H 0.393 0.607 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.997 5.748 -22.233 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.027 4.027 3 H 0.067 0.933 4 C -0.541 4.541 5 H 0.111 0.889 6 C -0.132 4.132 7 N -0.535 5.535 8 Si 0.715 3.285 9 H -0.206 1.206 10 H -0.224 1.224 11 H -0.193 1.193 12 C 0.314 3.686 13 O -0.407 6.407 14 N -0.409 5.409 15 C 0.013 3.987 16 C -0.092 4.092 17 H 0.102 0.898 18 C -0.175 4.175 19 C -0.139 4.139 20 N -0.183 5.183 21 C -0.023 4.023 22 C -0.237 4.237 23 C -0.188 4.188 24 C -0.214 4.214 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.231 0.769 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.696 4.398 -21.609 23.046 hybrid contribution -0.843 2.110 -0.164 2.278 sum -7.539 6.508 -21.773 23.943 Atomic orbital electron populations 1.22150 0.97454 1.01521 0.99134 1.19302 0.93146 0.97429 0.92849 0.93300 1.20955 1.31885 1.14026 0.87225 0.88869 1.24984 0.95871 0.96543 0.95785 1.69888 1.45580 1.40236 0.97825 0.86918 0.80739 0.83911 0.76976 1.20554 1.22371 1.19338 1.21230 0.79001 0.84351 0.84037 1.90578 1.37201 1.26288 1.86590 1.46702 1.55627 1.32781 1.05798 1.21102 0.97208 0.97815 0.82527 1.23743 0.91480 0.98362 0.95576 0.89784 1.23329 0.96515 1.02489 0.95202 1.24049 0.95315 1.02499 0.92075 1.68891 1.00929 1.40266 1.08240 1.21519 0.93525 0.91409 0.95806 1.22574 1.02130 0.98728 1.00316 1.21735 0.94818 1.00709 1.01489 1.22334 1.01987 1.02150 0.94979 0.93397 0.94850 0.92328 0.92632 0.76872 0.91834 0.90512 0.90953 0.88772 0.90167 0.89606 0.92097 0.91835 0.92182 0.91708 0.92473 0.92998 0.92860 0.91749 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.57 37.16 0.32 -2.71 16 2 C -0.01 -0.13 2.23 -92.93 -0.21 -0.34 16 3 H 0.05 1.13 7.20 -51.93 -0.37 0.76 16 4 C -0.50 -14.80 8.96 -34.44 -0.31 -15.11 16 5 H 0.09 3.13 7.00 -52.49 -0.37 2.76 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 7 N -0.90 -28.10 13.96 55.43 0.77 -27.32 16 8 Si 0.88 21.60 24.37 -169.99 -4.14 17.45 16 9 H -0.28 -6.58 6.87 56.52 0.39 -6.19 16 10 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 11 H -0.27 -6.08 6.53 56.52 0.37 -5.71 16 12 C 0.53 11.80 7.15 -10.99 -0.08 11.72 16 13 O -0.53 -14.15 15.43 5.55 0.09 -14.06 16 14 N -0.75 -12.60 3.95 -60.29 -0.24 -12.84 16 15 C 0.14 2.01 5.70 -4.04 -0.02 1.99 16 16 C 0.02 0.19 2.35 -66.65 -0.16 0.04 16 17 H 0.08 0.85 5.80 -51.93 -0.30 0.54 16 18 C -0.14 -1.20 7.85 -25.79 -0.20 -1.40 16 19 C -0.01 -0.09 7.46 -2.77 -0.02 -0.11 16 20 N -0.46 -5.01 5.79 -215.09 -1.24 -6.25 16 21 C 0.07 0.67 0.73 -131.60 -0.10 0.58 16 22 C -0.18 -1.45 7.00 37.16 0.26 -1.19 16 23 C -0.13 -1.23 8.52 37.16 0.32 -0.92 16 24 C -0.16 -1.77 5.72 37.16 0.21 -1.56 16 25 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 26 H 0.03 0.55 6.12 -51.93 -0.32 0.23 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 29 H 0.39 5.70 4.34 -40.82 -0.18 5.52 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.08 0.59 5.01 -51.93 -0.26 0.33 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.44 6.87 -51.93 -0.36 0.08 16 37 H 0.06 0.49 8.01 -51.93 -0.42 0.07 16 38 H 0.06 0.48 5.65 -51.93 -0.29 0.18 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 41 H 0.05 0.45 8.06 -51.92 -0.42 0.03 16 42 H 0.05 0.57 5.68 -51.93 -0.30 0.27 16 43 H 0.06 0.66 7.95 -51.93 -0.41 0.25 16 44 H 0.09 1.20 6.29 -51.93 -0.33 0.87 16 LS Contribution 322.29 15.07 4.86 4.86 Total: -1.00 -33.51 322.29 -7.04 -40.55 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.04 Total: 4.70 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -0.08 Total: -7.09 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.71 Total: -46.41 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.09 Total: -14.06 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.14 Total: 17.45 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.51 -7.04 -40.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597860012.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.809 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds