Wall clock time and date at job start Mon Mar 30 2020 05:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47177 * 2 1 4 4 C 1.50700 * 109.47143 * 119.99817 * 2 1 3 5 5 H 1.08002 * 120.00376 * 120.00641 * 4 2 1 6 6 C 1.37877 * 119.99942 * 300.00137 * 4 2 1 7 7 N 1.31519 * 120.00096 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00059 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47026 * 90.00307 * 8 6 4 10 10 H 1.48504 * 109.47244 * 210.00099 * 8 6 4 11 11 H 1.48496 * 109.47257 * 329.99968 * 8 6 4 12 12 C 1.50700 * 109.47308 * 239.99766 * 2 1 3 13 13 O 1.21286 * 120.00085 * 239.99627 * 12 2 1 14 14 N 1.34773 * 119.99920 * 60.00072 * 12 2 1 15 15 C 1.46498 * 120.00157 * 179.72501 * 14 12 2 16 16 C 1.53000 * 109.47277 * 172.74672 * 15 14 12 17 17 H 1.09000 * 112.95669 * 44.19071 * 16 15 14 18 18 C 1.53944 * 113.75877 * 175.83464 * 16 15 14 19 19 C 1.53934 * 86.33832 * 138.03742 * 18 16 15 20 20 N 1.47953 * 113.75901 * 272.39511 * 16 15 14 21 21 C 1.46903 * 110.99852 * 108.10049 * 20 16 15 22 22 C 1.52995 * 109.47206 * 64.19840 * 21 20 16 23 23 C 1.53003 * 109.47218 * 184.19950 * 21 20 16 24 24 C 1.52998 * 109.47348 * 304.19665 * 21 20 16 25 25 H 1.08999 * 109.47369 * 300.00172 * 1 2 3 26 26 H 1.09000 * 109.47206 * 60.00265 * 1 2 3 27 27 H 1.08996 * 109.47107 * 180.02562 * 1 2 3 28 28 H 0.97001 * 120.00254 * 180.02562 * 7 6 4 29 29 H 0.96997 * 119.99973 * 359.97438 * 14 12 2 30 30 H 1.09000 * 109.47272 * 292.74774 * 15 14 12 31 31 H 1.09001 * 109.47387 * 52.74357 * 15 14 12 32 32 H 1.08995 * 113.73156 * 252.39460 * 18 16 15 33 33 H 1.09002 * 113.73205 * 23.68378 * 18 16 15 34 34 H 1.08997 * 113.76022 * 90.59527 * 19 18 16 35 35 H 1.09000 * 113.76200 * 221.85603 * 19 18 16 36 36 H 1.09000 * 109.47357 * 77.94732 * 22 21 20 37 37 H 1.09004 * 109.47213 * 197.94886 * 22 21 20 38 38 H 1.09004 * 109.46866 * 317.94991 * 22 21 20 39 39 H 1.08996 * 109.47726 * 59.99668 * 23 21 20 40 40 H 1.08998 * 109.47390 * 180.02562 * 23 21 20 41 41 H 1.09009 * 109.46804 * 299.99777 * 23 21 20 42 42 H 1.09002 * 109.47418 * 81.39291 * 24 21 20 43 43 H 1.08994 * 109.47804 * 201.39848 * 24 21 20 44 44 H 1.09002 * 109.46959 * 321.39660 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 2.1380 -0.8589 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8745 2.6993 10 1 0.9771 1.9955 3.9070 11 1 0.8491 2.1774 1.4923 12 6 2.0323 -0.7105 -1.2304 13 8 2.7297 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.2001 -0.9371 -3.6507 16 6 1.5462 -0.3301 -4.8936 17 1 1.5219 0.7594 -4.8721 18 6 2.0720 -0.9127 -6.2181 19 6 0.6053 -0.9141 -6.6854 20 7 0.2512 -0.9509 -5.2492 21 6 -0.8657 -0.0418 -4.9589 22 6 -0.7564 1.1999 -5.8461 23 6 -2.1899 -0.7546 -5.2402 24 6 -0.8140 0.3762 -3.4880 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.9033 -0.5277 4.4376 29 1 1.1488 0.5384 -2.5435 30 1 3.2819 -0.8213 -3.7160 31 1 1.9512 -1.9966 -3.5898 32 1 2.7096 -0.2273 -6.7763 33 1 2.5017 -1.9095 -6.1190 34 1 0.3038 0.0046 -7.1885 35 1 0.3196 -1.8122 -7.2330 36 1 -1.1055 0.9607 -6.8506 37 1 -1.3691 1.9993 -5.4293 38 1 0.2833 1.5244 -5.8904 39 1 -2.2679 -1.6393 -4.6083 40 1 -3.0186 -0.0800 -5.0253 41 1 -2.2268 -1.0524 -6.2882 42 1 -0.0929 1.1843 -3.3650 43 1 -1.7997 0.7178 -3.1724 44 1 -0.5124 -0.4758 -2.8786 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597860012.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:50 Heat of formation + Delta-G solvation = -16.803615 kcal Electronic energy + Delta-G solvation = -22042.827655 eV Core-core repulsion = 18995.802499 eV Total energy + Delta-G solvation = -3047.025156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.91903 -40.40955 -36.14723 -35.76258 -35.53478 -33.29275 -29.69121 -28.47197 -28.27020 -27.90069 -27.05256 -25.11002 -23.35929 -21.73664 -20.80308 -19.49969 -18.81524 -17.94474 -17.30170 -16.94285 -16.46480 -16.30246 -15.79221 -15.37515 -15.12283 -15.05271 -14.72040 -14.36527 -14.08292 -13.72659 -13.57068 -13.41883 -13.28651 -13.00081 -12.79825 -12.61693 -12.55635 -12.44332 -12.18717 -12.06908 -11.94253 -11.87855 -11.51822 -11.43184 -11.31632 -11.20511 -10.77319 -10.42947 -9.93008 -9.56632 -8.26736 -6.34620 1.32469 1.39239 1.50629 1.88683 2.34089 2.39394 2.89648 3.06574 3.60389 3.80820 3.85297 3.97798 4.08156 4.12042 4.19868 4.35275 4.40854 4.46701 4.52328 4.58681 4.64717 4.71733 4.74900 4.77454 4.83212 4.87857 4.92818 4.99225 5.00961 5.04488 5.12813 5.19101 5.24024 5.31955 5.42952 5.48430 5.52308 5.58914 5.64932 6.26892 6.27017 6.67707 6.85431 7.26756 7.52147 8.91183 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027342 B = 0.005185 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.820807 B = 5399.213726 C = 6046.268278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.009 4.009 3 H 0.068 0.932 4 C -0.521 4.521 5 H 0.028 0.972 6 C 0.006 3.994 7 N -0.953 5.953 8 Si 0.959 3.041 9 H -0.260 1.260 10 H -0.298 1.298 11 H -0.230 1.230 12 C 0.523 3.477 13 O -0.588 6.588 14 N -0.723 5.723 15 C 0.137 3.863 16 C 0.022 3.978 17 H 0.102 0.898 18 C -0.130 4.130 19 C -0.004 4.004 20 N -0.486 5.486 21 C 0.065 3.935 22 C -0.174 4.174 23 C -0.128 4.128 24 C -0.161 4.161 25 H 0.047 0.953 26 H 0.081 0.919 27 H 0.043 0.957 28 H 0.267 0.733 29 H 0.408 0.592 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.127 9.154 -25.033 28.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.030 4.030 3 H 0.086 0.914 4 C -0.559 4.559 5 H 0.046 0.954 6 C -0.191 4.191 7 N -0.593 5.593 8 Si 0.784 3.216 9 H -0.186 1.186 10 H -0.226 1.226 11 H -0.153 1.153 12 C 0.311 3.689 13 O -0.467 6.467 14 N -0.380 5.380 15 C 0.013 3.987 16 C -0.087 4.087 17 H 0.120 0.880 18 C -0.169 4.169 19 C -0.132 4.132 20 N -0.210 5.210 21 C -0.025 4.025 22 C -0.232 4.232 23 C -0.185 4.185 24 C -0.219 4.219 25 H 0.066 0.934 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.250 0.750 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.855 7.832 -24.486 27.191 hybrid contribution -0.123 0.918 0.671 1.144 sum -8.978 8.751 -23.815 26.914 Atomic orbital electron populations 1.22029 0.94613 1.01475 1.01362 1.19256 0.95307 0.97409 0.91077 0.91422 1.21092 1.31608 1.12811 0.90400 0.95381 1.26051 0.97468 1.00783 0.94751 1.70085 1.47655 1.42866 0.98717 0.85707 0.78779 0.79009 0.78106 1.18591 1.22594 1.15291 1.21084 0.78574 0.83688 0.85521 1.90563 1.39890 1.28747 1.87484 1.46425 1.54248 1.32590 1.04733 1.21234 0.97667 0.96592 0.83196 1.23689 0.91900 0.98976 0.94144 0.88033 1.23310 0.97257 1.02402 0.93896 1.24100 0.94671 1.03574 0.90814 1.68869 1.01069 1.41051 1.10010 1.21558 0.93251 0.92255 0.95408 1.22513 1.02664 0.97643 1.00413 1.21719 0.95208 1.00112 1.01496 1.22344 1.02800 1.01068 0.95641 0.93441 0.90058 0.93750 0.92393 0.75047 0.91915 0.93158 0.88680 0.89707 0.88230 0.89413 0.90950 0.91126 0.91702 0.93843 0.91266 0.92242 0.92029 0.90588 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.42 8.57 71.98 0.62 -4.81 16 2 C -0.01 -0.42 2.23 -12.29 -0.03 -0.45 16 3 H 0.07 2.96 7.20 -2.38 -0.02 2.94 16 4 C -0.52 -31.99 8.96 25.60 0.23 -31.76 16 5 H 0.03 2.03 7.00 -2.91 -0.02 2.01 16 6 C 0.01 0.34 5.45 84.65 0.46 0.80 16 7 N -0.95 -62.22 13.96 21.45 0.30 -61.92 16 8 Si 0.96 43.60 24.37 68.60 1.67 45.28 16 9 H -0.26 -11.05 6.87 99.48 0.68 -10.37 16 10 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 11 H -0.23 -8.99 6.53 99.48 0.65 -8.34 16 12 C 0.52 23.88 7.15 87.66 0.63 24.51 16 13 O -0.59 -33.10 15.43 -3.05 -0.05 -33.15 16 14 N -0.72 -23.53 3.95 -463.06 -1.83 -25.36 16 15 C 0.14 3.94 5.70 86.38 0.49 4.43 16 16 C 0.02 0.43 2.35 45.02 0.11 0.54 16 17 H 0.10 1.63 5.80 -2.39 -0.01 1.62 16 18 C -0.13 -1.93 7.85 31.24 0.25 -1.69 16 19 C 0.00 -0.05 7.46 86.41 0.64 0.59 16 20 N -0.49 -9.49 5.79 -834.42 -4.83 -14.32 16 21 C 0.06 1.10 0.73 3.53 0.00 1.10 16 22 C -0.17 -2.03 7.00 71.98 0.50 -1.53 16 23 C -0.13 -2.12 8.52 71.98 0.61 -1.50 16 24 C -0.16 -3.14 5.72 71.98 0.41 -2.72 16 25 H 0.05 1.88 3.27 -2.39 -0.01 1.88 16 26 H 0.08 2.39 6.12 -2.39 -0.01 2.38 16 27 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 29 H 0.41 10.70 4.34 -92.71 -0.40 10.30 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 34 H 0.10 1.01 5.01 -2.39 -0.01 1.00 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 0.70 6.87 -2.39 -0.02 0.69 16 37 H 0.07 0.76 8.01 -2.38 -0.02 0.74 16 38 H 0.06 0.71 5.65 -2.39 -0.01 0.70 16 39 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.07 0.96 8.13 -2.39 -0.02 0.94 16 41 H 0.06 0.88 8.06 -2.38 -0.02 0.86 16 42 H 0.06 1.06 5.68 -2.39 -0.01 1.05 16 43 H 0.08 1.29 7.95 -2.39 -0.02 1.27 16 44 H 0.05 1.43 6.29 -2.39 -0.02 1.41 16 Total: -1.00 -79.35 322.29 0.70 -78.64 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.51 Total: 23.31 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 4.93 Total: -12.48 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -6.36 Total: -101.60 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -0.05 Total: -33.15 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.67 Total: 45.28 kcal Total: -79.35 0.70 -78.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597860012.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.840 kcal (2) G-P(sol) polarization free energy of solvation -79.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds