Wall clock time and date at job start Mon Mar 30 2020 05:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 110.88900 * 2 1 4 4 C 1.54686 * 111.13637 * 236.26416 * 2 1 3 5 5 N 1.47428 * 104.94400 * 205.09776 * 4 2 1 6 6 C 1.34779 * 125.64881 * 204.07637 * 5 4 2 7 7 O 1.21279 * 119.99890 * 179.68937 * 6 5 4 8 8 C 1.50698 * 120.00151 * 359.68906 * 6 5 4 9 9 H 1.09006 * 109.47280 * 320.00036 * 8 6 5 10 10 N 1.46893 * 109.47328 * 200.00254 * 8 6 5 11 11 C 1.52996 * 109.47245 * 79.99689 * 8 6 5 12 12 C 1.53002 * 109.47340 * 184.99973 * 11 8 6 13 13 C 1.50706 * 109.46925 * 180.02562 * 12 11 8 14 14 H 1.07999 * 120.00196 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99394 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00338 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99426 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47555 * 90.00165 * 17 15 13 19 19 H 1.48503 * 109.46814 * 210.00053 * 17 15 13 20 20 H 1.48496 * 109.47318 * 329.99545 * 17 15 13 21 21 C 1.47022 * 108.70290 * 23.80864 * 5 4 2 22 22 H 1.09001 * 109.88364 * 118.58385 * 21 5 4 23 23 C 1.52994 * 109.88361 * 239.75442 * 21 5 4 24 24 C 1.54323 * 107.26846 * 359.17077 * 21 5 4 25 25 H 1.09000 * 110.71978 * 96.17123 * 24 21 5 26 26 C 1.52997 * 110.71852 * 219.44206 * 24 21 5 27 27 H 1.09003 * 109.47648 * 296.12486 * 1 2 3 28 28 H 1.09008 * 109.47008 * 56.11853 * 1 2 3 29 29 H 1.08998 * 109.47606 * 176.11854 * 1 2 3 30 30 H 1.09001 * 110.39321 * 86.18527 * 4 2 1 31 31 H 1.09000 * 110.23946 * 323.93129 * 4 2 1 32 32 H 1.00900 * 110.99912 * 299.99601 * 10 8 6 33 33 H 1.00903 * 111.00409 * 63.94932 * 10 8 6 34 34 H 1.09004 * 109.46785 * 65.00281 * 11 8 6 35 35 H 1.09004 * 109.47694 * 305.00379 * 11 8 6 36 36 H 1.09000 * 109.46497 * 60.00561 * 12 11 8 37 37 H 1.09000 * 109.47312 * 300.00340 * 12 11 8 38 38 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 39 39 H 1.08999 * 109.47056 * 58.54481 * 23 21 5 40 40 H 1.09002 * 109.47202 * 178.54897 * 23 21 5 41 41 H 1.09002 * 109.47070 * 298.54276 * 23 21 5 42 42 H 1.08998 * 109.47384 * 60.00293 * 26 24 21 43 43 H 1.09006 * 109.47100 * 180.02562 * 26 24 21 44 44 H 1.08999 * 109.47657 * 299.99981 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0877 -0.8013 -1.1998 5 7 3.4280 -1.2423 -0.7724 6 6 4.4494 -1.5592 -1.5926 7 8 5.5148 -1.9059 -1.1284 8 6 4.2676 -1.4826 -3.0867 9 1 3.2787 -1.8564 -3.3520 10 7 5.2936 -2.3003 -3.7473 11 6 4.4024 -0.0285 -3.5430 12 6 4.0951 0.0673 -5.0388 13 6 4.2285 1.4995 -5.4883 14 1 4.5052 2.2648 -4.7783 15 6 3.9973 1.8327 -6.8061 16 7 3.6608 0.9007 -7.6708 17 14 4.1633 3.6079 -7.3634 18 1 5.5590 3.8602 -7.8035 19 1 3.2344 3.8606 -8.4942 20 1 3.8284 4.5142 -6.2358 21 6 3.4678 -1.2731 0.6970 22 1 3.6656 -2.2882 1.0413 23 6 4.5551 -0.3259 1.2080 24 6 2.0860 -0.8075 1.2026 25 1 1.4470 -1.6630 1.4212 26 6 2.2340 0.0882 2.4340 27 1 -0.3634 0.4525 0.9227 28 1 -0.3633 0.5729 -0.8532 29 1 -0.3634 -1.0253 -0.0696 30 1 2.1613 -0.1639 -2.0810 31 1 1.4526 -1.6629 -1.4058 32 1 6.2200 -1.9735 -3.5170 33 1 5.1854 -3.2756 -3.5124 34 1 5.4194 0.3175 -3.3581 35 1 3.7004 0.5933 -2.9873 36 1 3.0781 -0.2787 -5.2235 37 1 4.7971 -0.5545 -5.5945 38 1 3.4986 1.1352 -8.5979 39 1 4.3524 0.6848 0.8538 40 1 4.5615 -0.3345 2.2980 41 1 5.5261 -0.6533 0.8365 42 1 2.8283 0.9649 2.1764 43 1 1.2477 0.4045 2.7739 44 1 2.7312 -0.4668 3.2295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691546113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:10 Heat of formation + Delta-G solvation = -59.023788 kcal Electronic energy + Delta-G solvation = -21624.975865 eV Core-core repulsion = 18576.119906 eV Total energy + Delta-G solvation = -3048.855960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.51698 -38.26373 -35.21856 -33.36922 -32.87570 -32.60127 -30.08746 -28.44101 -27.03041 -25.98083 -25.01742 -23.41983 -21.54626 -20.42652 -19.54406 -18.76715 -17.09415 -16.40316 -16.14349 -15.41820 -15.21602 -14.76523 -14.39000 -14.25301 -14.18837 -13.54778 -13.36694 -12.86051 -12.74128 -12.57240 -12.36001 -12.19512 -12.05545 -11.87521 -11.71262 -11.55267 -11.43988 -10.90934 -10.82520 -10.79822 -10.59803 -10.50812 -10.38453 -9.99124 -9.75898 -9.34494 -8.99074 -8.57414 -8.33028 -8.17608 -5.93143 -3.95270 2.82104 3.09646 3.35182 3.41444 3.44163 4.23429 4.35390 4.50429 4.56051 4.89272 4.95911 5.07385 5.13446 5.20383 5.25764 5.29974 5.42241 5.43014 5.45552 5.55675 5.55905 5.64482 5.70132 5.74615 5.81065 5.86775 5.87793 5.98089 6.07134 6.18279 6.26209 6.43705 6.52455 6.68919 7.10255 7.43767 7.66406 7.76878 7.82414 7.97008 8.14139 8.34926 8.49294 9.12659 9.67858 11.17772 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019429 B = 0.004866 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.766732 B = 5753.362878 C = 6458.391771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.086 0.914 4 C 0.096 3.904 5 N -0.613 5.613 6 C 0.499 3.501 7 O -0.553 6.553 8 C 0.082 3.918 9 H 0.096 0.904 10 N -0.807 5.807 11 C -0.094 4.094 12 C 0.032 3.968 13 C -0.522 4.522 14 H 0.051 0.949 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.136 3.864 22 H 0.068 0.932 23 C -0.162 4.162 24 C -0.097 4.097 25 H 0.082 0.918 26 C -0.141 4.141 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.347 0.653 33 H 0.333 0.667 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.013 0.987 37 H 0.035 0.965 38 H 0.259 0.741 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.211 -4.153 18.817 20.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 H 0.105 0.895 4 C -0.027 4.027 5 N -0.348 5.348 6 C 0.288 3.712 7 O -0.431 6.431 8 C -0.034 4.034 9 H 0.113 0.887 10 N -0.334 5.334 11 C -0.133 4.133 12 C -0.005 4.005 13 C -0.560 4.560 14 H 0.070 0.930 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.716 3.284 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C 0.032 3.968 22 H 0.086 0.914 23 C -0.220 4.220 24 C -0.116 4.116 25 H 0.101 0.899 26 C -0.199 4.199 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.161 0.839 33 H 0.145 0.855 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.922 -4.145 18.103 19.493 hybrid contribution 0.318 0.716 0.633 1.007 sum -5.605 -3.429 18.737 19.855 Atomic orbital electron populations 1.21695 0.93654 1.02178 1.02272 1.22388 0.96216 0.99587 0.93772 0.89530 1.22508 0.83101 0.98571 0.98501 1.48716 1.12800 1.67242 1.06021 1.22469 0.82415 0.75330 0.91034 1.90622 1.26036 1.48471 1.77999 1.21805 0.97862 0.98904 0.84849 0.88660 1.59021 1.06879 1.05743 1.61799 1.21661 1.00893 0.89167 1.01547 1.19013 0.97211 0.96603 0.87683 1.21273 1.46629 0.93929 0.94184 0.93039 1.24981 0.95442 0.96954 0.96867 1.69975 1.47512 1.32363 1.03321 0.86663 0.77911 0.85532 0.78275 1.20720 1.21284 1.20026 1.21531 0.95259 0.99209 0.80788 0.91354 1.22198 0.99707 0.99474 1.00647 1.22318 0.95296 0.98670 0.95299 0.89941 1.21841 1.01800 0.99651 0.96584 0.92242 0.91854 0.92414 0.89151 0.91311 0.83870 0.85507 0.92924 0.92859 0.96909 0.94686 0.93109 0.92397 0.91821 0.91364 0.91843 0.92449 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.31 37.15 0.35 -0.75 16 2 C -0.10 -0.97 3.07 -88.59 -0.27 -1.24 16 3 H 0.09 0.89 8.02 -51.93 -0.42 0.48 16 4 C 0.10 1.14 5.86 -2.65 -0.02 1.12 16 5 N -0.61 -8.58 3.08 -163.16 -0.50 -9.08 16 6 C 0.50 8.43 6.87 -10.99 -0.08 8.35 16 7 O -0.55 -10.63 15.14 5.56 0.08 -10.55 16 8 C 0.08 1.44 2.43 -68.87 -0.17 1.27 16 9 H 0.10 1.61 7.68 -51.93 -0.40 1.21 16 10 N -0.81 -14.16 8.44 -5.66 -0.05 -14.21 16 11 C -0.09 -1.95 4.64 -26.73 -0.12 -2.08 16 12 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 13 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 14 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 17 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.14 1.63 3.44 -66.96 -0.23 1.40 16 22 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 23 C -0.16 -1.97 7.93 37.15 0.29 -1.68 16 24 C -0.10 -0.87 2.95 -88.79 -0.26 -1.14 16 25 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 26 C -0.14 -1.07 7.99 37.16 0.30 -0.78 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 30 H 0.09 1.20 6.03 -51.93 -0.31 0.89 16 31 H 0.07 0.74 7.98 -51.93 -0.41 0.32 16 32 H 0.35 6.17 8.58 -39.29 -0.34 5.84 16 33 H 0.33 5.12 9.06 -39.29 -0.36 4.76 16 34 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.05 1.05 6.57 -51.93 -0.34 0.71 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.03 0.98 7.75 -51.93 -0.40 0.58 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.06 0.72 7.53 -51.93 -0.39 0.33 16 40 H 0.06 0.62 6.70 -51.93 -0.35 0.27 16 41 H 0.07 1.02 6.74 -51.93 -0.35 0.67 16 42 H 0.06 0.52 6.61 -51.93 -0.34 0.17 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.40 7.59 -51.93 -0.39 0.01 16 LS Contribution 342.58 15.07 5.16 5.16 Total: -1.00 -31.89 342.58 -8.06 -39.96 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.72 Total: 6.52 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -0.76 Total: -8.33 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.19 Total: -49.48 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.08 Total: -10.55 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.89 -8.06 -39.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691546113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.068 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds