Wall clock time and date at job start Mon Mar 30 2020 05:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 C 1.53000 * 109.47242 * 180.02562 * 16 14 12 18 18 H 1.08997 * 109.47307 * 54.99552 * 17 16 14 19 19 N 1.46904 * 109.46799 * 294.99281 * 17 16 14 20 20 C 1.52996 * 109.47174 * 174.99933 * 17 16 14 21 21 C 1.54263 * 110.03143 * 297.16208 * 20 17 16 22 22 C 1.54895 * 104.19944 * 217.10567 * 21 20 17 23 23 C 1.54891 * 102.74584 * 37.94365 * 22 21 20 24 24 C 1.53883 * 110.03275 * 179.97438 * 20 17 16 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 30 30 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 31 31 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 32 32 H 1.09005 * 109.46708 * 299.99547 * 16 14 12 33 33 H 1.09000 * 109.47504 * 59.99304 * 16 14 12 34 34 H 1.00896 * 111.00091 * 300.00238 * 19 17 16 35 35 H 1.00906 * 110.99840 * 63.95565 * 19 17 16 36 36 H 1.09003 * 110.02119 * 58.60475 * 20 17 16 37 37 H 1.09002 * 110.48991 * 335.78272 * 21 20 17 38 38 H 1.08998 * 110.49045 * 98.43137 * 21 20 17 39 39 H 1.08995 * 110.75509 * 279.63326 * 22 21 20 40 40 H 1.08997 * 110.91460 * 156.32745 * 22 21 20 41 41 H 1.08997 * 110.48766 * 203.38108 * 23 22 21 42 42 H 1.09001 * 110.60209 * 80.79250 * 23 22 21 43 43 H 1.09004 * 110.03044 * 238.56735 * 24 20 17 44 44 H 1.08997 * 110.02898 * 359.97438 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 6 4.1452 0.2160 4.1468 18 1 3.5665 1.1127 4.3687 19 7 5.3500 0.5851 3.3917 20 6 4.5521 -0.4651 5.4550 21 6 3.2984 -0.7947 6.2913 22 6 3.7401 -0.5411 7.7541 23 6 4.6439 0.7103 7.6261 24 6 5.4081 0.4916 6.3034 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.7088 1.1611 -3.4845 29 1 2.4158 -2.7376 0.9718 30 1 1.6238 -2.2851 2.5003 31 1 0.6905 -2.3002 0.9847 32 1 2.4483 -1.0888 3.9070 33 1 3.9016 -1.6021 3.0167 34 1 5.9038 -0.2296 3.1736 35 1 5.1100 1.0940 2.5540 36 1 5.1107 -1.3769 5.2429 37 1 2.4750 -0.1334 6.0214 38 1 3.0120 -1.8375 6.1548 39 1 4.3067 -1.3889 8.1390 40 1 2.8796 -0.3327 8.3898 41 1 5.3393 0.7659 8.4636 42 1 4.0396 1.6159 7.5726 43 1 6.3814 0.0436 6.5038 44 1 5.5339 1.4410 5.7830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718634158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:58 Heat of formation + Delta-G solvation = -79.309974 kcal Electronic energy + Delta-G solvation = -21456.105053 eV Core-core repulsion = 18406.369418 eV Total energy + Delta-G solvation = -3049.735635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.05239 -39.35969 -37.24621 -35.47242 -34.81564 -31.81580 -30.30298 -29.27207 -28.71669 -27.59171 -27.28034 -23.98700 -22.36714 -21.39614 -20.46509 -19.81297 -18.53518 -17.88688 -17.29195 -16.73669 -16.45765 -16.38953 -15.93906 -15.34176 -15.15714 -14.61446 -14.37167 -14.13806 -14.08161 -14.00146 -13.47573 -13.15727 -12.96973 -12.93417 -12.72426 -12.61751 -12.37420 -12.19761 -12.14104 -11.84094 -11.81808 -11.76710 -11.71401 -11.39364 -11.21199 -11.16807 -10.63832 -10.45852 -9.55506 -9.32594 -8.16238 -6.33340 1.39796 1.41949 1.49476 1.80627 2.31204 2.49788 3.11412 3.56555 3.64719 3.80666 3.90842 4.06719 4.16958 4.34664 4.39041 4.59395 4.62904 4.69027 4.69927 4.77795 4.79037 4.83334 4.85716 4.92539 4.95333 5.01736 5.04369 5.05994 5.18484 5.21537 5.34700 5.44179 5.49909 5.56659 5.60672 5.65170 5.66848 6.01682 6.14355 6.29609 6.63639 6.74833 6.84545 7.31466 7.49035 8.87678 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035698 B = 0.004032 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.176626 B = 6942.711132 C = 7130.790766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.261 3.739 3 H 0.008 0.992 4 C -0.539 4.539 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.284 1.284 10 H -0.277 1.277 11 H -0.262 1.262 12 N -0.601 5.601 13 C 0.083 3.917 14 C 0.490 3.510 15 O -0.600 6.600 16 C -0.161 4.161 17 C 0.120 3.880 18 H 0.056 0.944 19 N -0.845 5.845 20 C -0.076 4.076 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.110 4.110 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.019 0.981 28 H 0.264 0.736 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.338 0.662 35 H 0.341 0.659 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.492 -8.579 17.994 20.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.159 3.841 3 H 0.026 0.974 4 C -0.577 4.577 5 H 0.077 0.923 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.209 1.209 10 H -0.202 1.202 11 H -0.187 1.187 12 N -0.331 5.331 13 C -0.060 4.060 14 C 0.279 3.721 15 O -0.483 6.483 16 C -0.202 4.202 17 C 0.008 3.992 18 H 0.074 0.926 19 N -0.376 5.376 20 C -0.095 4.095 21 C -0.160 4.160 22 C -0.157 4.157 23 C -0.166 4.166 24 C -0.148 4.148 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.134 0.866 33 H 0.125 0.875 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.735 -7.450 18.372 20.383 hybrid contribution -0.337 -0.429 -2.174 2.241 sum 4.399 -7.879 16.198 18.542 Atomic orbital electron populations 1.21884 0.97388 1.00042 0.99868 1.18498 0.91493 0.92212 0.81939 0.97393 1.21538 1.31960 1.13030 0.91219 0.92274 1.25748 0.95064 0.95632 1.02061 1.70019 1.37254 1.23899 1.24480 0.85516 0.78416 0.78978 0.78147 1.20936 1.20239 1.18712 1.48275 1.49143 1.13324 1.22402 1.21803 1.01398 0.80495 1.02276 1.21512 0.78199 0.86839 0.85526 1.90585 1.60026 1.19463 1.78206 1.22618 1.03119 1.00598 0.93873 1.21267 0.89520 0.95600 0.92843 0.92618 1.58963 1.20993 1.28389 1.29215 1.21754 0.96879 0.98237 0.92611 1.22480 0.96635 1.01942 0.94982 1.22472 0.99320 0.97819 0.96119 1.22421 0.98610 0.98217 0.97352 1.22045 0.98305 0.99430 0.95011 0.91478 0.93382 0.96242 0.92647 0.92744 0.88622 0.91357 0.86567 0.87492 0.84987 0.84395 0.90112 0.92387 0.90020 0.90578 0.91131 0.91079 0.92734 0.91722 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.48 8.95 71.98 0.64 -5.83 16 2 C 0.26 13.61 2.64 44.24 0.12 13.72 16 3 H 0.01 0.51 6.90 -2.38 -0.02 0.49 16 4 C -0.54 -29.35 8.37 25.60 0.21 -29.13 16 5 H 0.06 3.12 7.65 -2.91 -0.02 3.09 16 6 C 0.01 0.80 5.30 84.66 0.45 1.25 16 7 N -0.92 -53.26 11.32 21.45 0.24 -53.02 16 8 Si 0.96 43.08 29.54 68.60 2.03 45.10 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 12 N -0.60 -24.90 2.75 -826.81 -2.28 -27.17 16 13 C 0.08 2.51 9.48 127.77 1.21 3.73 16 14 C 0.49 19.40 7.48 87.66 0.66 20.06 16 15 O -0.60 -29.34 13.47 -3.03 -0.04 -29.38 16 16 C -0.16 -4.20 3.79 29.85 0.11 -4.09 16 17 C 0.12 3.19 1.67 44.91 0.08 3.26 16 18 H 0.06 1.81 7.93 -2.39 -0.02 1.79 16 19 N -0.85 -24.57 8.55 -168.68 -1.44 -26.01 16 20 C -0.08 -1.48 2.66 -10.07 -0.03 -1.51 16 21 C -0.12 -2.02 5.23 31.67 0.17 -1.85 16 22 C -0.12 -1.75 6.91 31.89 0.22 -1.53 16 23 C -0.13 -2.20 6.83 31.69 0.22 -1.98 16 24 C -0.11 -2.22 6.20 31.34 0.19 -2.03 16 25 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 26 H 0.05 2.10 6.66 -2.39 -0.02 2.09 16 27 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.10 2.06 6.44 -2.38 -0.02 2.04 16 31 H 0.07 2.14 6.43 -2.39 -0.02 2.13 16 32 H 0.12 2.46 6.38 -2.38 -0.02 2.44 16 33 H 0.11 2.37 8.11 -2.39 -0.02 2.35 16 34 H 0.34 8.44 9.00 -89.70 -0.81 7.63 16 35 H 0.34 12.35 6.88 -89.69 -0.62 11.74 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.06 1.09 7.77 -2.39 -0.02 1.08 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 44 H 0.05 1.36 7.37 -2.39 -0.02 1.34 16 Total: -1.00 -66.91 337.64 2.32 -64.59 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -0.44 Total: 31.84 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 4.25 Total: -5.94 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -3.48 Total: -106.20 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.04 Total: -29.38 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -66.91 2.32 -64.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718634158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.724 kcal (2) G-P(sol) polarization free energy of solvation -66.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds