Wall clock time and date at job start Mon Mar 30 2020 04:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.57648 * 2 1 4 4 C 1.53126 * 109.52216 * 120.15899 * 2 1 3 5 5 C 1.53034 * 109.27454 * 177.55677 * 4 2 1 6 6 N 1.46845 * 109.52676 * 300.81918 * 5 4 2 7 7 C 1.46850 * 111.19654 * 61.74248 * 6 5 4 8 8 C 1.53033 * 109.52490 * 298.25970 * 7 6 5 9 9 H 1.09004 * 109.53644 * 299.21861 * 8 7 6 10 10 C 1.50705 * 109.50283 * 179.11998 * 8 7 6 11 11 O 1.21283 * 119.99451 * 240.19493 * 10 8 7 12 12 N 1.34767 * 120.00128 * 60.19519 * 10 8 7 13 13 C 1.46499 * 120.00107 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.47445 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47091 * 300.00170 * 14 13 12 16 16 C 1.53005 * 109.46934 * 59.99963 * 14 13 12 17 17 C 1.50695 * 109.47267 * 179.97438 * 14 13 12 18 18 H 1.07998 * 120.00100 * 0.02562 * 17 14 13 19 19 C 1.37879 * 119.99865 * 179.97438 * 17 14 13 20 20 N 1.31509 * 119.99846 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 119.99876 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47136 * 59.99833 * 21 19 17 23 23 H 1.48500 * 109.47005 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47304 * 299.99902 * 21 19 17 25 25 H 1.09004 * 109.47218 * 299.83877 * 1 2 3 26 26 H 1.08993 * 109.47485 * 59.83687 * 1 2 3 27 27 H 1.09002 * 109.47434 * 179.84457 * 1 2 3 28 28 H 1.08997 * 109.50129 * 297.49979 * 4 2 1 29 29 H 1.09006 * 109.50177 * 57.61737 * 4 2 1 30 30 H 1.08995 * 109.46502 * 60.83953 * 5 4 2 31 31 H 1.09005 * 109.46032 * 180.80589 * 5 4 2 32 32 H 1.00905 * 111.00469 * 185.84339 * 6 5 4 33 33 H 1.09005 * 109.46186 * 178.24176 * 7 6 5 34 34 H 1.08998 * 109.46012 * 58.27570 * 7 6 5 35 35 H 0.97001 * 120.00032 * 0.02562 * 12 10 8 36 36 H 1.09005 * 109.46844 * 300.00212 * 13 12 10 37 37 H 1.09000 * 109.47407 * 59.99666 * 13 12 10 38 38 H 1.09003 * 109.47063 * 59.99286 * 15 14 13 39 39 H 1.08998 * 109.47172 * 179.97438 * 15 14 13 40 40 H 1.09001 * 109.47097 * 299.99983 * 15 14 13 41 41 H 1.08996 * 109.47253 * 60.00218 * 16 14 13 42 42 H 1.09003 * 109.46754 * 180.02562 * 16 14 13 43 43 H 1.09003 * 109.47051 * 299.99723 * 16 14 13 44 44 H 0.97003 * 119.99515 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0417 -0.7251 1.2479 5 6 3.5708 -0.7752 1.2116 6 7 4.0102 -1.4790 0.0000 7 6 3.5707 -0.7752 -1.2117 8 6 2.0416 -0.7251 -1.2478 9 1 1.6440 -1.7398 -1.2678 10 6 1.5915 0.0160 -2.4804 11 8 0.9269 1.0248 -2.3725 12 7 1.9275 -0.4421 -3.7025 13 6 1.4904 0.2786 -4.9007 14 6 2.0014 -0.4468 -6.1471 15 6 3.5301 -0.5020 -6.1143 16 6 1.4402 -1.8700 -6.1749 17 6 1.5513 0.2943 -7.3796 18 1 0.9602 1.1930 -7.2836 19 6 1.8949 -0.1746 -8.6299 20 7 2.6151 -1.2687 -8.7468 21 14 1.3376 0.7445 -10.1577 22 1 1.8817 2.1259 -10.1304 23 1 1.8334 0.0403 -11.3674 24 1 -0.1462 0.7975 -10.1898 25 1 -0.3634 0.5113 0.8915 26 1 -0.3634 0.5163 -0.8884 27 1 -0.3634 -1.0277 -0.0028 28 1 1.7162 -0.1890 2.1393 29 1 1.6446 -1.7401 1.2675 30 1 3.9674 0.2400 1.2059 31 1 3.9378 -1.3035 2.0916 32 1 5.0109 -1.6088 -0.0001 33 1 3.9377 -1.3035 -2.0917 34 1 3.9674 0.2400 -1.2060 35 1 2.4587 -1.2492 -3.7887 36 1 0.4013 0.3175 -4.9242 37 1 1.8898 1.2926 -4.8807 38 1 3.8553 -1.0382 -5.2228 39 1 3.8941 -1.0192 -7.0021 40 1 3.9299 0.5119 -6.0945 41 1 0.3512 -1.8307 -6.1983 42 1 1.8046 -2.3869 -7.0627 43 1 1.7655 -2.4063 -5.2834 44 1 2.8565 -1.5987 -9.6264 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822169609.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:21 Heat of formation + Delta-G solvation = -59.244673 kcal Electronic energy + Delta-G solvation = -21661.136007 eV Core-core repulsion = 18612.270469 eV Total energy + Delta-G solvation = -3048.865538 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.12631 -37.92091 -36.30284 -33.64659 -33.12236 -31.49092 -30.45614 -27.55960 -25.72719 -25.62453 -24.96475 -23.49902 -22.08692 -20.50425 -19.45398 -18.76021 -17.35818 -16.11182 -15.63840 -15.23884 -15.07733 -14.69138 -14.35991 -14.22110 -13.94727 -13.70760 -13.03944 -12.90144 -12.71108 -12.52123 -12.15938 -11.87708 -11.78414 -11.47563 -11.32676 -11.18328 -10.85008 -10.73166 -10.71332 -10.61448 -10.37514 -10.35689 -10.19721 -9.63112 -9.44343 -9.10876 -8.78689 -8.65967 -8.43593 -8.28576 -6.01910 -4.12052 3.05001 3.30031 3.34373 3.37760 3.72088 4.10670 4.40485 4.61723 4.74641 4.80516 5.05872 5.21601 5.24742 5.31436 5.40620 5.53168 5.60310 5.65447 5.68744 5.84297 5.93950 5.97940 6.10358 6.25243 6.33303 6.42098 6.51291 6.53011 6.77894 6.80835 6.82691 6.94262 7.01895 7.06886 7.16912 7.35808 7.55748 7.69339 8.00973 8.07484 8.16778 8.38860 8.73918 8.88622 9.53709 10.99400 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036209 B = 0.004180 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.097728 B = 6696.302725 C = 7119.463739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.070 4.070 3 H 0.072 0.928 4 C -0.113 4.113 5 C 0.055 3.945 6 N -0.688 5.688 7 C 0.067 3.933 8 C -0.101 4.101 9 H 0.101 0.899 10 C 0.509 3.491 11 O -0.548 6.548 12 N -0.716 5.716 13 C 0.131 3.869 14 C 0.056 3.944 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.507 4.507 18 H 0.056 0.944 19 C 0.067 3.933 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.345 0.655 33 H 0.081 0.919 34 H 0.036 0.964 35 H 0.397 0.603 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.006 0.994 39 H 0.085 0.915 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.006 0.994 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 -1.968 16.589 16.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.089 4.089 3 H 0.090 0.910 4 C -0.151 4.151 5 C -0.074 4.074 6 N -0.319 5.319 7 C -0.063 4.063 8 C -0.123 4.123 9 H 0.119 0.881 10 C 0.294 3.706 11 O -0.427 6.427 12 N -0.366 5.366 13 C 0.009 3.991 14 C 0.055 3.945 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.545 4.545 18 H 0.075 0.925 19 C -0.135 4.135 20 N -0.524 5.524 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.163 0.837 33 H 0.100 0.900 34 H 0.055 0.945 35 H 0.233 0.767 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.104 0.896 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.025 0.975 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.665 -1.790 16.484 16.665 hybrid contribution 0.609 0.818 -0.952 1.395 sum 2.274 -0.972 15.533 15.728 Atomic orbital electron populations 1.21975 0.94513 1.01456 1.03170 1.20915 0.96543 0.99031 0.92409 0.90966 1.21695 0.94517 1.01311 0.97596 1.21960 0.96319 0.96409 0.92737 1.60245 1.18704 1.51308 1.01651 1.21846 0.93896 0.97218 0.93320 1.21419 0.96147 1.01103 0.93625 0.88119 1.20454 0.80248 0.85171 0.84752 1.90610 1.39596 1.25646 1.86813 1.46367 1.54430 1.29678 1.06125 1.21703 0.98594 0.95292 0.83516 1.18350 0.92665 0.92848 0.90621 1.21822 0.97894 0.99055 0.99981 1.21826 0.98586 0.98305 1.00092 1.20947 1.33462 1.10149 0.89962 0.92545 1.24873 0.94826 0.94941 0.98819 1.69793 1.37566 1.21652 1.23424 0.86638 0.79090 0.79923 0.82234 1.20303 1.21323 1.20288 0.93258 0.89988 0.93426 0.91446 0.91073 0.95204 0.90814 0.83712 0.90030 0.94550 0.76735 0.92798 0.92843 0.97545 0.89611 0.95517 0.95469 0.89624 0.97477 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.91 37.16 0.33 -1.65 16 2 C -0.07 -0.87 1.92 -90.49 -0.17 -1.05 16 3 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 4 C -0.11 -1.12 5.38 -26.65 -0.14 -1.27 16 5 C 0.06 0.51 6.55 -3.84 -0.03 0.48 16 6 N -0.69 -6.84 6.85 -113.82 -0.78 -7.62 16 7 C 0.07 0.78 5.72 -3.83 -0.02 0.76 16 8 C -0.10 -1.34 2.20 -91.69 -0.20 -1.54 16 9 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 10 C 0.51 8.66 6.87 -10.99 -0.08 8.58 16 11 O -0.55 -11.07 13.83 5.55 0.08 -10.99 16 12 N -0.72 -12.60 4.86 -60.29 -0.29 -12.90 16 13 C 0.13 2.79 4.50 -4.04 -0.02 2.77 16 14 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 15 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 16 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 17 C -0.51 -13.26 8.01 -34.44 -0.28 -13.53 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 20 N -0.89 -23.53 9.35 55.43 0.52 -23.01 16 21 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 1.29 5.75 -51.93 -0.30 1.00 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.34 2.81 8.90 -39.29 -0.35 2.46 16 33 H 0.08 0.93 7.60 -51.93 -0.39 0.53 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.40 6.40 5.61 -40.82 -0.23 6.17 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 39 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 43 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 44 H 0.26 6.70 8.31 -40.82 -0.34 6.37 16 LS Contribution 333.14 15.07 5.02 5.02 Total: -1.00 -27.73 333.14 -8.30 -36.03 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -7.65 Total: 6.58 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -0.17 Total: -8.80 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -0.55 Total: -43.53 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.73 -8.30 -36.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822169609.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.212 kcal (2) G-P(sol) polarization free energy of solvation -27.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds