Wall clock time and date at job start Mon Mar 30 2020 04:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.57648 * 2 1 4 4 C 1.53126 * 109.52216 * 120.15899 * 2 1 3 5 5 C 1.53034 * 109.27454 * 177.55677 * 4 2 1 6 6 N 1.46845 * 109.52676 * 300.81918 * 5 4 2 7 7 C 1.46850 * 111.19654 * 61.74248 * 6 5 4 8 8 C 1.53033 * 109.52490 * 298.25970 * 7 6 5 9 9 H 1.09004 * 109.53644 * 299.21861 * 8 7 6 10 10 C 1.50705 * 109.50283 * 179.11998 * 8 7 6 11 11 O 1.21283 * 119.99451 * 240.19493 * 10 8 7 12 12 N 1.34767 * 120.00128 * 60.19519 * 10 8 7 13 13 C 1.46499 * 120.00107 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.47445 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47091 * 300.00170 * 14 13 12 16 16 C 1.53005 * 109.46934 * 59.99963 * 14 13 12 17 17 C 1.50695 * 109.47267 * 179.97438 * 14 13 12 18 18 H 1.07998 * 120.00100 * 0.02562 * 17 14 13 19 19 C 1.37879 * 119.99865 * 179.97438 * 17 14 13 20 20 N 1.31509 * 119.99846 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 119.99876 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47136 * 59.99833 * 21 19 17 23 23 H 1.48500 * 109.47005 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47304 * 299.99902 * 21 19 17 25 25 H 1.09004 * 109.47218 * 299.83877 * 1 2 3 26 26 H 1.08993 * 109.47485 * 59.83687 * 1 2 3 27 27 H 1.09002 * 109.47434 * 179.84457 * 1 2 3 28 28 H 1.08997 * 109.50129 * 297.49979 * 4 2 1 29 29 H 1.09006 * 109.50177 * 57.61737 * 4 2 1 30 30 H 1.08995 * 109.46502 * 60.83953 * 5 4 2 31 31 H 1.09005 * 109.46032 * 180.80589 * 5 4 2 32 32 H 1.00905 * 111.00469 * 185.84339 * 6 5 4 33 33 H 1.09005 * 109.46186 * 178.24176 * 7 6 5 34 34 H 1.08998 * 109.46012 * 58.27570 * 7 6 5 35 35 H 0.97001 * 120.00032 * 0.02562 * 12 10 8 36 36 H 1.09005 * 109.46844 * 300.00212 * 13 12 10 37 37 H 1.09000 * 109.47407 * 59.99666 * 13 12 10 38 38 H 1.09003 * 109.47063 * 59.99286 * 15 14 13 39 39 H 1.08998 * 109.47172 * 179.97438 * 15 14 13 40 40 H 1.09001 * 109.47097 * 299.99983 * 15 14 13 41 41 H 1.08996 * 109.47253 * 60.00218 * 16 14 13 42 42 H 1.09003 * 109.46754 * 180.02562 * 16 14 13 43 43 H 1.09003 * 109.47051 * 299.99723 * 16 14 13 44 44 H 0.97003 * 119.99515 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0417 -0.7251 1.2479 5 6 3.5708 -0.7752 1.2116 6 7 4.0102 -1.4790 0.0000 7 6 3.5707 -0.7752 -1.2117 8 6 2.0416 -0.7251 -1.2478 9 1 1.6440 -1.7398 -1.2678 10 6 1.5915 0.0160 -2.4804 11 8 0.9269 1.0248 -2.3725 12 7 1.9275 -0.4421 -3.7025 13 6 1.4904 0.2786 -4.9007 14 6 2.0014 -0.4468 -6.1471 15 6 3.5301 -0.5020 -6.1143 16 6 1.4402 -1.8700 -6.1749 17 6 1.5513 0.2943 -7.3796 18 1 0.9602 1.1930 -7.2836 19 6 1.8949 -0.1746 -8.6299 20 7 2.6151 -1.2687 -8.7468 21 14 1.3376 0.7445 -10.1577 22 1 1.8817 2.1259 -10.1304 23 1 1.8334 0.0403 -11.3674 24 1 -0.1462 0.7975 -10.1898 25 1 -0.3634 0.5113 0.8915 26 1 -0.3634 0.5163 -0.8884 27 1 -0.3634 -1.0277 -0.0028 28 1 1.7162 -0.1890 2.1393 29 1 1.6446 -1.7401 1.2675 30 1 3.9674 0.2400 1.2059 31 1 3.9378 -1.3035 2.0916 32 1 5.0109 -1.6088 -0.0001 33 1 3.9377 -1.3035 -2.0917 34 1 3.9674 0.2400 -1.2060 35 1 2.4587 -1.2492 -3.7887 36 1 0.4013 0.3175 -4.9242 37 1 1.8898 1.2926 -4.8807 38 1 3.8553 -1.0382 -5.2228 39 1 3.8941 -1.0192 -7.0021 40 1 3.9299 0.5119 -6.0945 41 1 0.3512 -1.8307 -6.1983 42 1 1.8046 -2.3869 -7.0627 43 1 1.7655 -2.4063 -5.2834 44 1 2.8565 -1.5987 -9.6264 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822169609.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:21 Heat of formation + Delta-G solvation = -77.175252 kcal Electronic energy + Delta-G solvation = -21661.913535 eV Core-core repulsion = 18612.270469 eV Total energy + Delta-G solvation = -3049.643066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.38035 -39.12247 -37.96170 -35.11664 -34.27895 -33.00771 -31.77649 -28.56768 -27.56276 -27.43371 -26.67215 -24.59348 -22.99844 -21.74572 -20.66799 -20.44676 -18.62719 -17.77247 -17.01447 -16.69236 -16.47861 -16.17902 -15.47461 -15.34761 -15.06587 -14.95865 -14.68178 -14.35596 -14.11830 -13.87850 -13.43358 -13.22924 -13.08067 -12.84516 -12.76110 -12.63419 -12.59796 -12.36168 -12.24008 -12.13276 -11.67712 -11.58393 -11.47507 -11.33699 -11.19005 -10.73741 -10.50202 -10.39249 -9.89859 -9.44542 -8.02047 -6.17871 1.43795 1.45060 1.51574 1.68687 2.32227 2.50228 3.21423 3.25344 3.63869 3.80345 3.85794 4.11221 4.30118 4.31922 4.46031 4.50916 4.54065 4.62379 4.65983 4.72321 4.77478 4.86709 4.89806 4.99299 5.05856 5.06263 5.11217 5.14351 5.19422 5.20637 5.34958 5.47524 5.48223 5.64661 5.67044 5.67411 5.98743 6.15241 6.21906 6.43666 6.49145 6.69370 6.85995 7.35045 7.49750 8.96559 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036209 B = 0.004180 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.097728 B = 6696.302725 C = 7119.463739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.070 4.070 3 H 0.054 0.946 4 C -0.107 4.107 5 C 0.053 3.947 6 N -0.686 5.686 7 C 0.071 3.929 8 C -0.092 4.092 9 H 0.112 0.888 10 C 0.508 3.492 11 O -0.582 6.582 12 N -0.710 5.710 13 C 0.148 3.852 14 C 0.051 3.949 15 C -0.119 4.119 16 C -0.120 4.120 17 C -0.531 4.531 18 H 0.043 0.957 19 C 0.030 3.970 20 N -0.898 5.898 21 Si 0.944 3.056 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.278 1.278 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.027 0.973 31 H 0.096 0.904 32 H 0.357 0.643 33 H 0.087 0.913 34 H 0.026 0.974 35 H 0.407 0.593 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.062 0.938 40 H 0.017 0.983 41 H 0.016 0.984 42 H 0.062 0.938 43 H 0.037 0.963 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.337 -3.017 18.270 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.089 4.089 3 H 0.072 0.928 4 C -0.145 4.145 5 C -0.076 4.076 6 N -0.319 5.319 7 C -0.059 4.059 8 C -0.114 4.114 9 H 0.130 0.870 10 C 0.295 3.705 11 O -0.462 6.462 12 N -0.361 5.361 13 C 0.025 3.975 14 C 0.050 3.950 15 C -0.177 4.177 16 C -0.178 4.178 17 C -0.569 4.569 18 H 0.061 0.939 19 C -0.170 4.170 20 N -0.536 5.536 21 Si 0.771 3.229 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.203 1.203 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.114 0.886 32 H 0.177 0.823 33 H 0.105 0.895 34 H 0.044 0.956 35 H 0.245 0.755 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.081 0.919 43 H 0.055 0.945 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.434 -2.861 18.181 18.565 hybrid contribution 0.353 1.166 -1.436 1.883 sum 2.787 -1.695 16.745 17.060 Atomic orbital electron populations 1.21915 0.94961 1.01758 1.02188 1.20931 0.96188 0.98374 0.93439 0.92794 1.21664 0.95053 1.01212 0.96540 1.22039 0.95739 0.96653 0.93152 1.60232 1.19767 1.50780 1.01099 1.21753 0.92445 0.97042 0.94648 1.21402 0.97465 1.00863 0.91625 0.87001 1.21179 0.79177 0.84770 0.85406 1.90607 1.40959 1.27350 1.87296 1.46198 1.54688 1.29806 1.05409 1.21240 0.97267 0.94637 0.84405 1.18356 0.93265 0.93035 0.90316 1.21655 0.97070 0.98611 1.00352 1.21664 0.97802 0.97885 1.00414 1.21242 1.33745 1.10235 0.91689 0.93885 1.25434 0.95019 0.95677 1.00904 1.69897 1.37798 1.22182 1.23773 0.85840 0.78527 0.78892 0.79677 1.20300 1.20742 1.20335 0.91817 0.93384 0.92402 0.89888 0.90671 0.95432 0.88566 0.82286 0.89507 0.95593 0.75548 0.94581 0.94536 0.94381 0.91904 0.96390 0.96430 0.91884 0.94456 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 8.91 71.98 0.64 -3.08 16 2 C -0.07 -1.64 1.92 -10.71 -0.02 -1.66 16 3 H 0.05 1.46 8.04 -2.39 -0.02 1.44 16 4 C -0.11 -1.80 5.38 30.65 0.16 -1.64 16 5 C 0.05 0.81 6.55 86.33 0.57 1.37 16 6 N -0.69 -11.52 6.85 -514.01 -3.52 -15.04 16 7 C 0.07 1.51 5.72 86.32 0.49 2.00 16 8 C -0.09 -2.28 2.20 -11.49 -0.03 -2.30 16 9 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 10 C 0.51 17.04 6.87 87.66 0.60 17.65 16 11 O -0.58 -23.90 13.83 -3.04 -0.04 -23.94 16 12 N -0.71 -24.44 4.86 -463.06 -2.25 -26.69 16 13 C 0.15 6.36 4.50 86.38 0.39 6.74 16 14 C 0.05 2.36 0.50 -52.93 -0.03 2.33 16 15 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 16 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 17 C -0.53 -28.18 8.01 25.60 0.21 -27.98 16 18 H 0.04 2.34 7.74 -2.91 -0.02 2.31 16 19 C 0.03 1.56 5.15 84.66 0.44 2.00 16 20 N -0.90 -47.79 9.35 21.45 0.20 -47.59 16 21 Si 0.94 42.67 29.54 68.60 2.03 44.69 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.05 1.53 5.75 -2.39 -0.01 1.51 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.36 4.67 8.90 -89.69 -0.80 3.88 16 33 H 0.09 1.75 7.60 -2.38 -0.02 1.73 16 34 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.41 12.30 5.61 -92.71 -0.52 11.78 16 36 H 0.04 1.65 8.14 -2.38 -0.02 1.64 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 39 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16 40 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 42 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 43 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 44 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 Total: -1.00 -59.93 333.14 0.67 -59.26 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -0.34 Total: 23.30 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 4.59 Total: -14.00 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -5.57 Total: -89.31 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.04 Total: -23.94 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -59.93 0.67 -59.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822169609.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.912 kcal (2) G-P(sol) polarization free energy of solvation -59.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds