Wall clock time and date at job start Mon Mar 30 2020 04:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46907 * 109.47131 * 2 1 4 4 C 1.47009 * 110.99833 * 293.63284 * 3 2 1 5 5 C 1.53097 * 109.25682 * 177.61133 * 4 3 2 6 6 O 1.43012 * 109.29454 * 56.82538 * 5 4 3 7 7 C 1.43011 * 113.73679 * 301.40000 * 6 5 4 8 8 H 1.08997 * 109.50792 * 298.64008 * 7 6 5 9 9 C 1.53004 * 109.50626 * 178.55655 * 7 6 5 10 10 N 1.46902 * 109.47006 * 65.09050 * 9 7 6 11 11 C 1.46899 * 111.00010 * 190.00490 * 10 9 7 12 12 C 1.50695 * 109.47873 * 70.60507 * 11 10 9 13 13 H 1.08001 * 119.99642 * 5.20204 * 12 11 10 14 14 C 1.37875 * 120.00529 * 185.19710 * 12 11 10 15 15 N 1.31512 * 120.00147 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 119.99646 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47415 * 89.99697 * 16 14 12 18 18 H 1.48507 * 109.46880 * 209.99267 * 16 14 12 19 19 H 1.48496 * 109.47099 * 329.99377 * 16 14 12 20 20 C 1.46889 * 111.00482 * 66.04349 * 10 9 7 21 21 C 1.53004 * 117.50168 * 117.68341 * 20 10 9 22 22 C 1.53001 * 117.50274 * 186.34338 * 20 10 9 23 23 C 1.47010 * 110.99762 * 169.99986 * 3 2 1 24 24 H 1.09010 * 109.47172 * 300.00480 * 1 2 3 25 25 H 1.09005 * 109.46939 * 59.99962 * 1 2 3 26 26 H 1.08994 * 109.47277 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47363 * 239.99603 * 2 1 3 28 28 H 1.09005 * 109.46939 * 120.00038 * 2 1 3 29 29 H 1.09004 * 109.50627 * 297.54259 * 4 3 2 30 30 H 1.09001 * 109.50870 * 57.62817 * 4 3 2 31 31 H 1.09006 * 109.50635 * 176.78438 * 5 4 3 32 32 H 1.09004 * 109.50395 * 296.91255 * 5 4 3 33 33 H 1.09006 * 109.47225 * 305.09315 * 9 7 6 34 34 H 1.08997 * 109.47140 * 185.08342 * 9 7 6 35 35 H 1.09006 * 109.47290 * 190.60830 * 11 10 9 36 36 H 1.09006 * 109.46738 * 310.60654 * 11 10 9 37 37 H 0.97006 * 120.00237 * 180.02562 * 15 14 12 38 38 H 1.08999 * 115.55125 * 332.01879 * 20 10 9 39 39 H 1.08995 * 117.50421 * 215.01035 * 21 20 10 40 40 H 1.09003 * 117.49607 * 0.02884 * 21 20 10 41 41 H 1.08999 * 117.49744 * 359.97438 * 22 20 10 42 42 H 1.09008 * 117.49742 * 144.99934 * 22 20 10 43 43 H 1.09003 * 109.50721 * 62.45644 * 23 3 2 44 44 H 1.08999 * 109.54671 * 302.34506 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6765 2.0651 -1.2574 5 6 2.1516 3.5190 -1.1910 6 8 3.5570 3.5453 -0.9272 7 6 3.9266 2.8914 0.2897 8 1 3.4495 3.3927 1.1318 9 6 5.4465 2.9454 0.4574 10 7 5.8713 4.3417 0.6246 11 6 7.3338 4.4593 0.5512 12 6 7.7869 4.2172 -0.8654 13 1 7.0572 4.0811 -1.6500 14 6 9.1329 4.1693 -1.1602 15 7 9.5283 3.9575 -2.3964 16 14 10.3950 4.4040 0.1968 17 1 10.7321 3.0863 0.7927 18 1 11.6221 5.0196 -0.3695 19 1 9.8342 5.2928 1.2460 20 6 5.3608 4.9002 1.8836 21 6 6.3876 5.3488 2.9254 22 6 5.5892 6.3914 2.1390 23 6 3.4696 1.4312 0.2383 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.1663 1.5598 -2.0898 30 1 0.5964 2.0406 -1.4014 31 1 1.9505 4.0114 -2.1425 32 1 1.6222 4.0388 -0.3924 33 1 5.9248 2.5234 -0.4265 34 1 5.7356 2.3700 1.3368 35 1 7.6339 5.4599 0.8626 36 1 7.7912 3.7212 1.2101 37 1 10.4753 3.9234 -2.6037 38 1 4.4312 4.4637 2.2488 39 1 6.1337 5.2072 3.9759 40 1 7.4421 5.2298 2.6763 41 1 6.1187 6.9579 1.3730 42 1 4.8097 6.9359 2.6722 43 1 3.9879 0.9157 -0.5703 44 1 3.6990 0.9445 1.1863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086507336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:51 Heat of formation + Delta-G solvation = 1.898639 kcal Electronic energy + Delta-G solvation = -21651.222230 eV Core-core repulsion = 18605.008065 eV Total energy + Delta-G solvation = -3046.214165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.63010 -38.08369 -35.97156 -33.80730 -32.55422 -31.24012 -30.77150 -28.18949 -26.54041 -24.40840 -23.20046 -22.44277 -21.74235 -21.24648 -20.19057 -18.81085 -17.07952 -16.29299 -16.05072 -15.79475 -15.25133 -15.02382 -14.57576 -14.36247 -14.05422 -13.86961 -13.48208 -12.94779 -12.70549 -12.52236 -12.21032 -12.07678 -12.00839 -11.76887 -11.54736 -11.30904 -11.04912 -10.96815 -10.82669 -10.61606 -10.55848 -10.31555 -9.92423 -9.75936 -9.66330 -9.28556 -9.12454 -8.53229 -8.41637 -7.17083 -6.00938 -3.97564 3.28941 3.37190 3.38854 3.71662 4.10607 4.30953 4.44509 4.65846 4.82718 4.96755 5.07804 5.10035 5.25378 5.30105 5.30430 5.32635 5.36487 5.47049 5.51399 5.55152 5.60346 5.64889 5.72888 5.79524 5.88200 5.97641 5.98827 6.03409 6.07202 6.14749 6.20510 6.46101 6.62875 6.66106 6.84323 6.91790 6.93047 6.98103 7.60006 7.67838 7.92487 8.10896 8.71000 9.13079 9.61122 11.12347 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021198 B = 0.005080 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.590076 B = 5510.152805 C = 6122.502137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 N -0.538 5.538 4 C 0.015 3.985 5 C 0.062 3.938 6 O -0.351 6.351 7 C 0.102 3.898 8 H 0.060 0.940 9 C 0.071 3.929 10 N -0.484 5.484 11 C 0.162 3.838 12 C -0.507 4.507 13 H 0.084 0.916 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.872 3.128 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.268 1.268 20 C 0.024 3.976 21 C -0.229 4.229 22 C -0.173 4.173 23 C 0.022 3.978 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.033 0.967 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.098 0.902 34 H 0.038 0.962 35 H 0.032 0.968 36 H -0.013 1.013 37 H 0.263 0.737 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.069 -5.145 7.560 18.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 N -0.263 5.263 4 C -0.113 4.113 5 C -0.016 4.016 6 O -0.269 6.269 7 C 0.044 3.956 8 H 0.078 0.922 9 C -0.058 4.058 10 N -0.205 5.205 11 C 0.036 3.964 12 C -0.545 4.545 13 H 0.102 0.898 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.699 3.301 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.086 4.086 21 C -0.268 4.268 22 C -0.211 4.211 23 C -0.106 4.106 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.005 0.995 37 H 0.072 0.928 38 H 0.124 0.876 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.106 0.894 43 H 0.065 0.935 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.187 -4.570 7.285 18.330 hybrid contribution 1.322 -0.935 0.833 1.821 sum -14.864 -5.504 8.118 17.809 Atomic orbital electron populations 1.21791 0.94909 1.01402 1.02436 1.22090 0.96022 0.88911 1.00861 1.62255 1.13978 1.15808 1.34292 1.22870 1.01232 0.96557 0.90666 1.22589 0.83546 0.94085 1.01392 1.88258 1.21204 1.76885 1.40560 1.22226 0.95930 0.89796 0.87687 0.92224 1.21974 0.91749 0.90206 1.01839 1.61718 1.13878 1.16607 1.28261 1.20278 0.82405 0.95908 0.97832 1.21086 0.92591 1.48166 0.92649 0.89789 1.24888 0.98184 0.95026 0.95168 1.69897 1.15590 1.50281 1.18151 0.86924 0.81627 0.78699 0.82849 1.20388 1.21179 1.19264 1.22710 0.98055 0.96879 0.90969 1.23588 0.99401 1.06896 0.96955 1.22982 1.02756 0.92573 1.02769 1.22807 0.87328 0.98709 1.01797 0.91892 0.92687 0.92392 0.94841 0.90796 0.93970 0.89940 0.88771 0.92950 0.88356 0.94371 0.95007 0.99544 0.92751 0.87641 0.89875 0.88162 0.88404 0.89448 0.93529 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.85 37.16 0.37 -0.87 16 2 C 0.05 0.50 5.68 -3.82 -0.02 0.48 16 3 N -0.54 -6.70 4.73 -234.31 -1.11 -7.81 16 4 C 0.01 0.18 5.44 -3.71 -0.02 0.16 16 5 C 0.06 0.85 7.01 37.21 0.26 1.11 16 6 O -0.35 -6.41 10.42 -35.23 -0.37 -6.78 16 7 C 0.10 1.67 2.78 -26.68 -0.07 1.60 16 8 H 0.06 0.95 6.30 -51.93 -0.33 0.62 16 9 C 0.07 1.36 4.47 -3.82 -0.02 1.34 16 10 N -0.48 -10.31 4.62 -228.08 -1.05 -11.37 16 11 C 0.16 3.94 2.43 -4.98 -0.01 3.93 16 12 C -0.51 -14.57 8.90 -34.44 -0.31 -14.87 16 13 H 0.08 2.68 7.90 -52.49 -0.41 2.27 16 14 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 16 Si 0.87 21.64 27.37 -169.99 -4.65 16.99 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.27 -6.39 6.69 56.52 0.38 -6.02 16 20 C 0.02 0.43 5.78 -67.72 -0.39 0.04 16 21 C -0.23 -3.85 9.53 -26.69 -0.25 -4.11 16 22 C -0.17 -2.88 9.97 -26.69 -0.27 -3.15 16 23 C 0.02 0.31 4.93 -3.71 -0.02 0.29 16 24 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 25 H 0.05 0.45 6.52 -51.93 -0.34 0.11 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 28 H 0.07 0.71 8.04 -51.93 -0.42 0.29 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.83 6.38 -51.93 -0.33 0.50 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.10 2.17 7.10 -51.93 -0.37 1.80 16 34 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 35 H 0.03 0.79 5.33 -51.93 -0.28 0.52 16 36 H -0.01 -0.32 7.00 -51.93 -0.36 -0.68 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.11 1.66 6.33 -51.93 -0.33 1.34 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.10 1.91 5.92 -51.93 -0.31 1.60 16 41 H 0.10 1.81 7.70 -51.93 -0.40 1.41 16 42 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.02 8.09 -51.93 -0.42 0.60 16 LS Contribution 336.52 15.07 5.07 5.07 Total: -1.00 -31.41 336.52 -9.87 -41.28 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.68 Total: 1.84 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -0.85 Total: -12.16 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -1.39 Total: -46.23 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.37 Total: -6.78 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.65 Total: 16.99 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.41 -9.87 -41.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086507336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.174 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds