Wall clock time and date at job start Mon Mar 30 2020 04:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46907 * 109.47131 * 2 1 4 4 C 1.47009 * 110.99833 * 293.63284 * 3 2 1 5 5 C 1.53097 * 109.25682 * 177.61133 * 4 3 2 6 6 O 1.43012 * 109.29454 * 56.82538 * 5 4 3 7 7 C 1.43011 * 113.73679 * 301.40000 * 6 5 4 8 8 H 1.08997 * 109.50792 * 298.64008 * 7 6 5 9 9 C 1.53004 * 109.50626 * 178.55655 * 7 6 5 10 10 N 1.46902 * 109.47006 * 65.09050 * 9 7 6 11 11 C 1.46899 * 111.00010 * 190.00490 * 10 9 7 12 12 C 1.50695 * 109.47873 * 70.60507 * 11 10 9 13 13 H 1.08001 * 119.99642 * 5.20204 * 12 11 10 14 14 C 1.37875 * 120.00529 * 185.19710 * 12 11 10 15 15 N 1.31512 * 120.00147 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 119.99646 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47415 * 89.99697 * 16 14 12 18 18 H 1.48507 * 109.46880 * 209.99267 * 16 14 12 19 19 H 1.48496 * 109.47099 * 329.99377 * 16 14 12 20 20 C 1.46889 * 111.00482 * 66.04349 * 10 9 7 21 21 C 1.53004 * 117.50168 * 117.68341 * 20 10 9 22 22 C 1.53001 * 117.50274 * 186.34338 * 20 10 9 23 23 C 1.47010 * 110.99762 * 169.99986 * 3 2 1 24 24 H 1.09010 * 109.47172 * 300.00480 * 1 2 3 25 25 H 1.09005 * 109.46939 * 59.99962 * 1 2 3 26 26 H 1.08994 * 109.47277 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47363 * 239.99603 * 2 1 3 28 28 H 1.09005 * 109.46939 * 120.00038 * 2 1 3 29 29 H 1.09004 * 109.50627 * 297.54259 * 4 3 2 30 30 H 1.09001 * 109.50870 * 57.62817 * 4 3 2 31 31 H 1.09006 * 109.50635 * 176.78438 * 5 4 3 32 32 H 1.09004 * 109.50395 * 296.91255 * 5 4 3 33 33 H 1.09006 * 109.47225 * 305.09315 * 9 7 6 34 34 H 1.08997 * 109.47140 * 185.08342 * 9 7 6 35 35 H 1.09006 * 109.47290 * 190.60830 * 11 10 9 36 36 H 1.09006 * 109.46738 * 310.60654 * 11 10 9 37 37 H 0.97006 * 120.00237 * 180.02562 * 15 14 12 38 38 H 1.08999 * 115.55125 * 332.01879 * 20 10 9 39 39 H 1.08995 * 117.50421 * 215.01035 * 21 20 10 40 40 H 1.09003 * 117.49607 * 0.02884 * 21 20 10 41 41 H 1.08999 * 117.49744 * 359.97438 * 22 20 10 42 42 H 1.09008 * 117.49742 * 144.99934 * 22 20 10 43 43 H 1.09003 * 109.50721 * 62.45644 * 23 3 2 44 44 H 1.08999 * 109.54671 * 302.34506 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6765 2.0651 -1.2574 5 6 2.1516 3.5190 -1.1910 6 8 3.5570 3.5453 -0.9272 7 6 3.9266 2.8914 0.2897 8 1 3.4495 3.3927 1.1318 9 6 5.4465 2.9454 0.4574 10 7 5.8713 4.3417 0.6246 11 6 7.3338 4.4593 0.5512 12 6 7.7869 4.2172 -0.8654 13 1 7.0572 4.0811 -1.6500 14 6 9.1329 4.1693 -1.1602 15 7 9.5283 3.9575 -2.3964 16 14 10.3950 4.4040 0.1968 17 1 10.7321 3.0863 0.7927 18 1 11.6221 5.0196 -0.3695 19 1 9.8342 5.2928 1.2460 20 6 5.3608 4.9002 1.8836 21 6 6.3876 5.3488 2.9254 22 6 5.5892 6.3914 2.1390 23 6 3.4696 1.4312 0.2383 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.1663 1.5598 -2.0898 30 1 0.5964 2.0406 -1.4014 31 1 1.9505 4.0114 -2.1425 32 1 1.6222 4.0388 -0.3924 33 1 5.9248 2.5234 -0.4265 34 1 5.7356 2.3700 1.3368 35 1 7.6339 5.4599 0.8626 36 1 7.7912 3.7212 1.2101 37 1 10.4753 3.9234 -2.6037 38 1 4.4312 4.4637 2.2488 39 1 6.1337 5.2072 3.9759 40 1 7.4421 5.2298 2.6763 41 1 6.1187 6.9579 1.3730 42 1 4.8097 6.9359 2.6722 43 1 3.9879 0.9157 -0.5703 44 1 3.6990 0.9445 1.1863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086507336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:51 Heat of formation + Delta-G solvation = -21.312532 kcal Electronic energy + Delta-G solvation = -21652.228742 eV Core-core repulsion = 18605.008065 eV Total energy + Delta-G solvation = -3047.220677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.83769 -39.51841 -37.06443 -35.42573 -34.50604 -32.60940 -31.76925 -29.87722 -27.95060 -25.68895 -24.34920 -24.14778 -23.10643 -22.39331 -21.32180 -20.37404 -19.14118 -17.45866 -17.34419 -17.22400 -16.50348 -16.29232 -16.06921 -15.71550 -15.48616 -15.00327 -14.74359 -14.59757 -14.24171 -14.09403 -13.61026 -13.28895 -13.16410 -12.92474 -12.78992 -12.57077 -12.51547 -12.38038 -12.26035 -12.02359 -11.88169 -11.74013 -11.67740 -11.33599 -11.18379 -11.03117 -10.78000 -10.46982 -9.43623 -8.77514 -8.28194 -6.31148 1.31496 1.33867 1.44805 2.32957 2.66822 2.90476 2.94753 3.04757 3.28081 3.84436 3.95102 3.97030 4.00709 4.06413 4.19134 4.22114 4.23671 4.33825 4.39791 4.53614 4.54812 4.57260 4.66362 4.66790 4.74728 4.81168 4.83862 4.85977 4.93420 5.02538 5.07698 5.09053 5.13950 5.17326 5.33625 5.34807 5.55981 5.90008 6.00371 6.01097 6.33775 6.49779 6.69211 6.77133 7.32190 8.89103 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021198 B = 0.005080 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.590076 B = 5510.152805 C = 6122.502137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.046 3.954 3 N -0.538 5.538 4 C 0.019 3.981 5 C 0.056 3.944 6 O -0.394 6.394 7 C 0.111 3.889 8 H 0.072 0.928 9 C 0.075 3.925 10 N -0.507 5.507 11 C 0.178 3.822 12 C -0.514 4.514 13 H 0.031 0.969 14 C 0.008 3.992 15 N -0.949 5.949 16 Si 0.946 3.054 17 H -0.265 1.265 18 H -0.281 1.281 19 H -0.250 1.250 20 C 0.010 3.990 21 C -0.219 4.219 22 C -0.169 4.169 23 C 0.029 3.971 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.028 0.972 28 H 0.082 0.918 29 H 0.027 0.973 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.030 0.970 36 H -0.010 1.010 37 H 0.266 0.734 38 H 0.132 0.868 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.122 0.878 43 H 0.026 0.974 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.484 -5.282 10.592 21.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 N -0.264 5.264 4 C -0.109 4.109 5 C -0.020 4.020 6 O -0.313 6.313 7 C 0.053 3.947 8 H 0.090 0.910 9 C -0.054 4.054 10 N -0.228 5.228 11 C 0.051 3.949 12 C -0.552 4.552 13 H 0.050 0.950 14 C -0.189 4.189 15 N -0.590 5.590 16 Si 0.769 3.231 17 H -0.190 1.190 18 H -0.206 1.206 19 H -0.174 1.174 20 C -0.099 4.099 21 C -0.258 4.258 22 C -0.207 4.207 23 C -0.100 4.100 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.046 0.954 28 H 0.101 0.899 29 H 0.046 0.954 30 H 0.127 0.873 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.008 0.992 37 H 0.075 0.925 38 H 0.150 0.850 39 H 0.136 0.864 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.140 0.860 43 H 0.045 0.955 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.637 -4.712 10.328 20.975 hybrid contribution 1.664 -0.892 -0.210 1.900 sum -15.973 -5.604 10.118 19.721 Atomic orbital electron populations 1.21755 0.93169 1.02539 1.02471 1.22211 0.97394 0.87488 1.01064 1.62315 1.12546 1.17297 1.34195 1.22850 1.02570 0.95269 0.90183 1.22802 0.81491 0.95521 1.02231 1.88200 1.24026 1.77557 1.41485 1.22105 0.93695 0.91380 0.87522 0.91008 1.21904 0.93738 0.89252 1.00479 1.61561 1.11777 1.18104 1.31387 1.19941 0.84857 0.95465 0.94605 1.21272 0.92018 1.48007 0.93944 0.95022 1.25840 1.00596 0.94505 0.97919 1.70064 1.16346 1.51761 1.20796 0.85740 0.78289 0.79474 0.79596 1.19005 1.20625 1.17396 1.22870 0.99408 0.97740 0.89918 1.23580 0.97698 1.06048 0.98439 1.23053 1.03364 0.91993 1.02320 1.22693 0.88396 0.96852 1.02076 0.91866 0.92551 0.90780 0.95359 0.89928 0.95428 0.87251 0.87920 0.91883 0.92810 0.92612 0.95248 0.99222 0.92476 0.85034 0.86439 0.90510 0.90988 0.86019 0.95523 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.85 71.98 0.71 -1.28 16 2 C 0.05 0.84 5.68 86.30 0.49 1.33 16 3 N -0.54 -12.53 4.73 -895.22 -4.23 -16.76 16 4 C 0.02 0.45 5.44 86.31 0.47 0.92 16 5 C 0.06 1.52 7.01 72.01 0.50 2.02 16 6 O -0.39 -14.73 10.42 -148.98 -1.55 -16.28 16 7 C 0.11 3.62 2.78 30.63 0.09 3.70 16 8 H 0.07 2.15 6.30 -2.39 -0.02 2.13 16 9 C 0.07 2.93 4.47 86.30 0.39 3.31 16 10 N -0.51 -21.85 4.62 -875.52 -4.04 -25.89 16 11 C 0.18 8.81 2.43 85.56 0.21 9.02 16 12 C -0.51 -31.03 8.90 25.60 0.23 -30.80 16 13 H 0.03 2.18 7.90 -2.91 -0.02 2.16 16 14 C 0.01 0.50 5.47 84.65 0.46 0.97 16 15 N -0.95 -61.05 13.96 21.45 0.30 -60.75 16 16 Si 0.95 45.07 27.37 68.60 1.88 46.95 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 19 H -0.25 -11.13 6.69 99.48 0.67 -10.46 16 20 C 0.01 0.33 5.78 44.92 0.26 0.59 16 21 C -0.22 -6.71 9.53 30.62 0.29 -6.42 16 22 C -0.17 -5.26 9.97 30.62 0.31 -4.96 16 23 C 0.03 0.78 4.93 86.31 0.43 1.21 16 24 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.06 0.77 6.52 -2.38 -0.02 0.76 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.03 0.56 8.12 -2.39 -0.02 0.54 16 28 H 0.08 1.38 8.04 -2.38 -0.02 1.37 16 29 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.11 1.94 6.38 -2.39 -0.02 1.93 16 31 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.05 2.55 7.10 -2.38 -0.02 2.54 16 34 H 0.06 1.94 8.12 -2.39 -0.02 1.92 16 35 H 0.03 1.47 5.33 -2.38 -0.01 1.46 16 36 H -0.01 -0.48 7.00 -2.38 -0.02 -0.49 16 37 H 0.27 15.91 8.31 -92.70 -0.77 15.14 16 38 H 0.13 3.71 6.33 -2.39 -0.02 3.69 16 39 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.08 2.75 5.92 -2.39 -0.01 2.74 16 41 H 0.07 2.62 7.70 -2.39 -0.02 2.60 16 42 H 0.12 2.93 8.14 -2.38 -0.02 2.91 16 43 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.10 2.33 8.09 -2.39 -0.02 2.31 16 Total: -1.00 -71.70 336.52 -1.91 -73.61 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.91 Total: 19.52 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 4.82 Total: -20.39 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -7.97 Total: -103.41 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -1.55 Total: -16.28 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.95 kcal Total: -71.70 -1.91 -73.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086507336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.295 kcal (2) G-P(sol) polarization free energy of solvation -71.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds