Wall clock time and date at job start Mon Mar 30 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 119.99725 * 2 1 4 4 N 1.34778 * 120.00056 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99722 * 179.97438 * 4 2 1 6 6 C 1.53125 * 109.51896 * 154.99671 * 5 4 2 7 7 C 1.53031 * 109.27565 * 177.62262 * 6 5 4 8 8 N 1.46847 * 109.52562 * 300.82032 * 7 6 5 9 9 C 1.46905 * 111.00382 * 185.83566 * 8 7 6 10 10 C 1.52996 * 109.47327 * 169.99981 * 9 8 7 11 11 C 1.52997 * 109.47131 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47184 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99944 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46926 * 60.00512 * 17 15 13 19 19 H 1.48506 * 109.46961 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47227 * 300.00303 * 17 15 13 21 21 C 1.46854 * 111.19529 * 61.74538 * 8 7 6 22 22 C 1.53035 * 109.52033 * 298.25406 * 21 8 7 23 23 H 1.09002 * 109.46385 * 240.00084 * 1 2 3 24 24 H 1.08992 * 109.47230 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46785 * 119.99770 * 1 2 3 26 26 H 0.96995 * 120.00171 * 359.97438 * 4 2 1 27 27 H 1.08998 * 109.52355 * 34.87699 * 5 4 2 28 28 H 1.09004 * 109.50048 * 57.68275 * 6 5 4 29 29 H 1.08997 * 109.53817 * 297.58520 * 6 5 4 30 30 H 1.08997 * 109.46480 * 180.80510 * 7 6 5 31 31 H 1.08998 * 109.45746 * 60.83073 * 7 6 5 32 32 H 1.09001 * 109.46440 * 50.00426 * 9 8 7 33 33 H 1.08992 * 109.47499 * 290.00842 * 9 8 7 34 34 H 1.09001 * 109.46993 * 60.00228 * 10 9 8 35 35 H 1.09004 * 109.47298 * 300.00642 * 10 9 8 36 36 H 1.09001 * 109.46832 * 60.00325 * 11 10 9 37 37 H 1.08993 * 109.47194 * 299.99846 * 11 10 9 38 38 H 1.09001 * 109.46801 * 300.00272 * 12 11 10 39 39 H 1.09001 * 109.46998 * 59.99868 * 12 11 10 40 40 H 0.96997 * 119.99752 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.46338 * 58.27437 * 21 8 7 42 42 H 1.09001 * 109.46277 * 178.24448 * 21 8 7 43 43 H 1.08996 * 109.50754 * 299.24032 * 22 21 8 44 44 H 1.09001 * 109.50317 * 179.11892 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6460 -1.1671 -0.0011 6 6 4.1579 -2.4752 0.6084 7 6 5.6870 -2.4949 0.5510 8 7 6.1272 -2.3793 -0.8452 9 6 7.5842 -2.5335 -0.9524 10 6 7.9770 -2.6572 -2.4259 11 6 9.4943 -2.8184 -2.5375 12 6 9.8872 -2.9414 -4.0111 13 6 11.3818 -3.0995 -4.1210 14 1 11.9906 -3.1116 -3.2290 15 6 11.9720 -3.2299 -5.3603 16 7 11.2305 -3.2158 -6.4464 17 14 13.8246 -3.4267 -5.4965 18 1 14.2474 -4.6494 -4.7674 19 1 14.2057 -3.5472 -6.9267 20 1 14.4932 -2.2407 -4.9037 21 6 5.6876 -1.1093 -1.4371 22 6 4.1584 -1.0483 -1.4391 23 1 -0.3632 -0.5139 0.8900 24 1 -0.3633 1.0276 0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 1.6960 -2.0072 -0.0005 27 1 4.0104 -0.3244 0.5864 28 1 3.7616 -3.3193 0.0440 29 1 3.8318 -2.5461 1.6461 30 1 6.0542 -3.4312 0.9712 31 1 6.0828 -1.6585 1.1269 32 1 7.8949 -3.4307 -0.4171 33 1 8.0747 -1.6628 -0.5174 34 1 7.6662 -1.7600 -2.9613 35 1 7.4864 -3.5280 -2.8609 36 1 9.8047 -3.7158 -2.0022 37 1 9.9852 -1.9478 -2.1025 38 1 9.3963 -3.8118 -4.4465 39 1 9.5768 -2.0438 -4.5460 40 1 11.6458 -3.3072 -7.3183 41 1 6.0835 -0.2795 -0.8517 42 1 6.0551 -1.0393 -2.4609 43 1 3.7622 -1.8699 -2.0357 44 1 3.8327 -0.0989 -1.8641 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385219020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:13 Heat of formation + Delta-G solvation = -66.136960 kcal Electronic energy + Delta-G solvation = -20244.176861 eV Core-core repulsion = 17195.012451 eV Total energy + Delta-G solvation = -3049.164410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.24625 -38.74732 -35.81723 -34.30723 -32.69855 -31.53674 -31.02011 -29.72385 -27.93835 -24.94992 -23.51572 -23.16134 -21.07902 -20.78454 -20.01495 -19.91776 -17.14924 -16.76821 -16.17649 -15.68309 -15.42527 -15.21434 -14.60527 -14.41396 -14.21693 -13.84566 -13.68350 -13.55612 -12.90466 -12.59697 -12.56489 -12.46105 -12.18875 -11.72724 -11.56567 -11.45282 -11.27183 -11.08613 -10.89157 -10.74301 -10.48221 -10.44246 -10.27968 -10.09856 -9.58102 -9.29450 -9.22295 -8.98644 -8.30482 -8.27276 -5.95264 -3.97456 2.36493 2.91449 3.35815 3.39914 3.42516 3.89346 4.39440 4.49633 4.57455 4.66058 4.86318 4.89700 4.98948 5.05428 5.17128 5.31044 5.36261 5.39047 5.40508 5.49757 5.50563 5.58927 5.69834 5.81169 5.89473 5.89971 5.94636 6.11136 6.19057 6.25870 6.28774 6.55961 6.84846 7.00136 7.09760 7.14178 7.22154 7.27889 7.73592 7.90027 7.94976 8.05988 8.48750 9.09893 9.66157 11.16074 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044624 B = 0.002610 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.321023 B =10726.115129 C =11069.888854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.508 3.492 3 O -0.546 6.546 4 N -0.727 5.727 5 C 0.142 3.858 6 C -0.121 4.121 7 C 0.058 3.942 8 N -0.539 5.539 9 C 0.057 3.943 10 C -0.114 4.114 11 C -0.109 4.109 12 C 0.022 3.978 13 C -0.520 4.520 14 H 0.053 0.947 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.054 3.946 22 C -0.124 4.124 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.400 0.600 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.044 0.956 38 H 0.015 0.985 39 H 0.014 0.986 40 H 0.260 0.740 41 H 0.033 0.967 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.681 1.848 15.413 26.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.295 3.705 3 O -0.424 6.424 4 N -0.378 5.378 5 C 0.038 3.962 6 C -0.160 4.160 7 C -0.071 4.071 8 N -0.264 5.264 9 C -0.070 4.070 10 C -0.152 4.152 11 C -0.148 4.148 12 C -0.015 4.015 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.074 4.074 22 C -0.163 4.163 23 H 0.105 0.895 24 H 0.110 0.890 25 H 0.106 0.894 26 H 0.234 0.766 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.105 0.895 43 H 0.092 0.908 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.460 2.228 14.967 26.259 hybrid contribution 1.171 0.092 0.248 1.200 sum -20.290 2.319 15.215 25.467 Atomic orbital electron populations 1.21926 0.91780 1.05524 1.04196 1.20843 0.90608 0.83603 0.75427 1.90739 1.70880 1.31429 1.49313 1.46154 1.07367 1.08689 1.75637 1.21069 0.79081 0.98847 0.97250 1.21850 0.96092 0.97159 1.00851 1.21994 0.94206 1.01262 0.89599 1.62003 1.13851 1.34054 1.16488 1.22223 0.85408 1.00381 0.99035 1.21676 0.97919 1.01947 0.93610 1.21600 0.92218 0.99948 1.00985 1.19083 0.95862 0.97059 0.89544 1.21256 0.92807 1.49593 0.92192 0.92840 1.25037 0.98035 0.95505 0.95987 1.69961 1.35212 1.50694 0.97720 0.86669 0.85873 0.78646 0.76866 1.20273 1.21313 1.20289 1.22106 0.94471 0.89813 1.01040 1.21960 0.95477 1.02609 0.96273 0.89500 0.89034 0.89360 0.76573 0.89824 0.90401 0.91154 0.90230 0.94894 0.90953 0.95092 0.92573 0.91689 0.93479 0.93713 0.96633 0.96760 0.93007 0.94873 0.89479 0.90807 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 10.32 36.01 0.37 -0.50 16 2 C 0.51 4.76 7.91 -10.98 -0.09 4.67 16 3 O -0.55 -7.83 16.75 5.55 0.09 -7.73 16 4 N -0.73 -5.53 5.08 -53.68 -0.27 -5.81 16 5 C 0.14 1.36 2.52 -67.80 -0.17 1.19 16 6 C -0.12 -0.99 5.57 -26.65 -0.15 -1.13 16 7 C 0.06 0.59 5.46 -3.84 -0.02 0.57 16 8 N -0.54 -6.80 4.66 -234.67 -1.09 -7.89 16 9 C 0.06 0.81 4.96 -3.82 -0.02 0.79 16 10 C -0.11 -1.97 5.14 -26.73 -0.14 -2.10 16 11 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 12 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 13 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 14 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 17 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.05 0.68 5.29 -3.83 -0.02 0.66 16 22 C -0.12 -1.37 5.68 -26.65 -0.15 -1.52 16 23 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 25 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.40 1.85 8.61 -40.82 -0.35 1.50 16 27 H 0.08 0.98 7.58 -51.93 -0.39 0.59 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.75 8.01 -51.93 -0.42 0.33 16 31 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.99 7.99 -51.93 -0.41 0.57 16 33 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.06 0.98 6.43 -51.93 -0.33 0.65 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.09 1.18 6.21 -51.93 -0.32 0.86 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 351.14 15.07 5.29 5.29 Total: -1.00 -33.62 351.14 -9.45 -43.07 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -8.11 Total: -3.91 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -1.07 Total: -13.25 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: -0.63 Total: -40.46 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.09 Total: -7.73 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.62 -9.45 -43.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385219020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.068 kcal (2) G-P(sol) polarization free energy of solvation -33.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds