Wall clock time and date at job start Mon Mar 30 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 119.99725 * 2 1 4 4 N 1.34778 * 120.00056 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99722 * 179.97438 * 4 2 1 6 6 C 1.53125 * 109.51896 * 154.99671 * 5 4 2 7 7 C 1.53031 * 109.27565 * 177.62262 * 6 5 4 8 8 N 1.46847 * 109.52562 * 300.82032 * 7 6 5 9 9 C 1.46905 * 111.00382 * 185.83566 * 8 7 6 10 10 C 1.52996 * 109.47327 * 169.99981 * 9 8 7 11 11 C 1.52997 * 109.47131 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47184 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99944 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46926 * 60.00512 * 17 15 13 19 19 H 1.48506 * 109.46961 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47227 * 300.00303 * 17 15 13 21 21 C 1.46854 * 111.19529 * 61.74538 * 8 7 6 22 22 C 1.53035 * 109.52033 * 298.25406 * 21 8 7 23 23 H 1.09002 * 109.46385 * 240.00084 * 1 2 3 24 24 H 1.08992 * 109.47230 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46785 * 119.99770 * 1 2 3 26 26 H 0.96995 * 120.00171 * 359.97438 * 4 2 1 27 27 H 1.08998 * 109.52355 * 34.87699 * 5 4 2 28 28 H 1.09004 * 109.50048 * 57.68275 * 6 5 4 29 29 H 1.08997 * 109.53817 * 297.58520 * 6 5 4 30 30 H 1.08997 * 109.46480 * 180.80510 * 7 6 5 31 31 H 1.08998 * 109.45746 * 60.83073 * 7 6 5 32 32 H 1.09001 * 109.46440 * 50.00426 * 9 8 7 33 33 H 1.08992 * 109.47499 * 290.00842 * 9 8 7 34 34 H 1.09001 * 109.46993 * 60.00228 * 10 9 8 35 35 H 1.09004 * 109.47298 * 300.00642 * 10 9 8 36 36 H 1.09001 * 109.46832 * 60.00325 * 11 10 9 37 37 H 1.08993 * 109.47194 * 299.99846 * 11 10 9 38 38 H 1.09001 * 109.46801 * 300.00272 * 12 11 10 39 39 H 1.09001 * 109.46998 * 59.99868 * 12 11 10 40 40 H 0.96997 * 119.99752 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.46338 * 58.27437 * 21 8 7 42 42 H 1.09001 * 109.46277 * 178.24448 * 21 8 7 43 43 H 1.08996 * 109.50754 * 299.24032 * 22 21 8 44 44 H 1.09001 * 109.50317 * 179.11892 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6460 -1.1671 -0.0011 6 6 4.1579 -2.4752 0.6084 7 6 5.6870 -2.4949 0.5510 8 7 6.1272 -2.3793 -0.8452 9 6 7.5842 -2.5335 -0.9524 10 6 7.9770 -2.6572 -2.4259 11 6 9.4943 -2.8184 -2.5375 12 6 9.8872 -2.9414 -4.0111 13 6 11.3818 -3.0995 -4.1210 14 1 11.9906 -3.1116 -3.2290 15 6 11.9720 -3.2299 -5.3603 16 7 11.2305 -3.2158 -6.4464 17 14 13.8246 -3.4267 -5.4965 18 1 14.2474 -4.6494 -4.7674 19 1 14.2057 -3.5472 -6.9267 20 1 14.4932 -2.2407 -4.9037 21 6 5.6876 -1.1093 -1.4371 22 6 4.1584 -1.0483 -1.4391 23 1 -0.3632 -0.5139 0.8900 24 1 -0.3633 1.0276 0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 1.6960 -2.0072 -0.0005 27 1 4.0104 -0.3244 0.5864 28 1 3.7616 -3.3193 0.0440 29 1 3.8318 -2.5461 1.6461 30 1 6.0542 -3.4312 0.9712 31 1 6.0828 -1.6585 1.1269 32 1 7.8949 -3.4307 -0.4171 33 1 8.0747 -1.6628 -0.5174 34 1 7.6662 -1.7600 -2.9613 35 1 7.4864 -3.5280 -2.8609 36 1 9.8047 -3.7158 -2.0022 37 1 9.9852 -1.9478 -2.1025 38 1 9.3963 -3.8118 -4.4465 39 1 9.5768 -2.0438 -4.5460 40 1 11.6458 -3.3072 -7.3183 41 1 6.0835 -0.2795 -0.8517 42 1 6.0551 -1.0393 -2.4609 43 1 3.7622 -1.8699 -2.0357 44 1 3.8327 -0.0989 -1.8641 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385219020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:13 Heat of formation + Delta-G solvation = -89.387695 kcal Electronic energy + Delta-G solvation = -20245.185089 eV Core-core repulsion = 17195.012451 eV Total energy + Delta-G solvation = -3050.172637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.04844 -39.67765 -37.02679 -35.81337 -34.35986 -32.76544 -31.90966 -30.60665 -29.36000 -26.54847 -24.66073 -24.22140 -22.56219 -21.58536 -21.50601 -20.87314 -18.42147 -17.85559 -17.57094 -16.65691 -16.57869 -16.34439 -16.11516 -15.76090 -15.21516 -14.81617 -14.62491 -14.46989 -14.30769 -13.91521 -13.66593 -13.32544 -13.29420 -13.05560 -12.94221 -12.78155 -12.49229 -12.31383 -12.23499 -12.18389 -12.09802 -11.78440 -11.53716 -11.32793 -11.24414 -11.01389 -10.86019 -10.54978 -10.07251 -9.30205 -8.19741 -6.31387 1.39190 1.42854 1.50763 1.65895 2.27097 2.40856 2.89112 3.12742 3.67167 3.79229 3.96375 4.05786 4.06149 4.17923 4.26461 4.37342 4.47247 4.51743 4.57415 4.58302 4.63588 4.69216 4.72024 4.81427 4.83733 4.93314 4.96366 5.04909 5.10232 5.12973 5.22861 5.27754 5.30332 5.37305 5.52143 5.55490 5.77930 5.86995 6.07670 6.17504 6.26248 6.61427 6.86100 7.30419 7.37824 8.92016 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044624 B = 0.002610 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.321023 B =10726.115129 C =11069.888854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.500 3.500 3 O -0.605 6.605 4 N -0.713 5.713 5 C 0.145 3.855 6 C -0.110 4.110 7 C 0.054 3.946 8 N -0.543 5.543 9 C 0.066 3.934 10 C -0.103 4.103 11 C -0.097 4.097 12 C 0.023 3.977 13 C -0.545 4.545 14 H 0.060 0.940 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.265 1.265 19 H -0.283 1.283 20 H -0.267 1.267 21 C 0.055 3.945 22 C -0.116 4.116 23 H 0.114 0.886 24 H 0.084 0.916 25 H 0.110 0.890 26 H 0.419 0.581 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.030 0.970 32 H 0.085 0.915 33 H 0.031 0.969 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.047 0.953 38 H -0.010 1.010 39 H -0.014 1.014 40 H 0.264 0.736 41 H 0.026 0.974 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.237 0.569 17.133 28.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.290 3.710 3 O -0.487 6.487 4 N -0.365 5.365 5 C 0.040 3.960 6 C -0.148 4.148 7 C -0.074 4.074 8 N -0.268 5.268 9 C -0.062 4.062 10 C -0.141 4.141 11 C -0.135 4.135 12 C -0.014 4.014 13 C -0.583 4.583 14 H 0.079 0.921 15 C -0.202 4.202 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.190 1.190 19 H -0.208 1.208 20 H -0.192 1.192 21 C -0.074 4.074 22 C -0.155 4.155 23 H 0.133 0.867 24 H 0.102 0.898 25 H 0.129 0.871 26 H 0.256 0.744 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.049 0.951 32 H 0.104 0.896 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.008 0.992 39 H 0.005 0.995 40 H 0.072 0.928 41 H 0.044 0.956 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.050 0.906 16.709 27.681 hybrid contribution 1.307 0.490 -0.317 1.431 sum -20.743 1.396 16.392 26.475 Atomic orbital electron populations 1.21926 0.88082 1.05888 1.06536 1.21688 0.92403 0.82937 0.74003 1.90718 1.72327 1.33506 1.52103 1.46029 1.06580 1.09336 1.74531 1.20897 0.80325 0.99024 0.95751 1.21787 0.94506 0.96225 1.02249 1.22138 0.95627 1.01888 0.87766 1.61977 1.12619 1.33725 1.18433 1.22031 0.86700 1.01031 0.96399 1.21495 0.95260 1.01213 0.96148 1.21401 0.94740 1.00386 0.96941 1.19015 0.94979 0.94494 0.92894 1.21720 0.94104 1.49710 0.92756 0.92128 1.26043 1.03698 0.94884 0.95538 1.70104 1.37618 1.51444 0.98365 0.85476 0.79053 0.79229 0.77141 1.18975 1.20810 1.19192 1.22049 0.95531 0.89812 0.99962 1.21856 0.94358 1.01806 0.97517 0.86738 0.89752 0.87150 0.74386 0.92180 0.89333 0.88858 0.88781 0.95123 0.89623 0.95096 0.93415 0.92399 0.92679 0.93427 0.99155 0.99540 0.92778 0.95614 0.91198 0.90355 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 10.32 71.24 0.74 -0.54 16 2 C 0.50 8.90 7.91 87.66 0.69 9.59 16 3 O -0.60 -17.78 16.75 -3.04 -0.05 -17.83 16 4 N -0.71 -9.60 5.08 -442.13 -2.25 -11.84 16 5 C 0.15 2.64 2.52 45.07 0.11 2.75 16 6 C -0.11 -1.49 5.57 30.65 0.17 -1.32 16 7 C 0.05 0.97 5.46 86.32 0.47 1.45 16 8 N -0.54 -13.11 4.66 -896.37 -4.17 -17.28 16 9 C 0.07 1.81 4.96 86.30 0.43 2.24 16 10 C -0.10 -3.60 5.14 30.59 0.16 -3.44 16 11 C -0.10 -4.05 5.15 30.60 0.16 -3.90 16 12 C 0.02 1.28 4.97 29.85 0.15 1.42 16 13 C -0.54 -31.95 9.11 25.60 0.23 -31.72 16 14 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 15 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 16 N -0.94 -58.47 13.29 21.45 0.28 -58.19 16 17 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 18 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 C 0.06 1.40 5.29 86.32 0.46 1.86 16 22 C -0.12 -2.56 5.68 30.65 0.17 -2.39 16 23 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 24 H 0.08 0.82 8.12 -2.39 -0.02 0.80 16 25 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.42 2.59 8.61 -92.71 -0.80 1.79 16 27 H 0.06 1.41 7.58 -2.39 -0.02 1.39 16 28 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.47 8.01 -2.39 -0.02 1.45 16 31 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 2.14 7.99 -2.39 -0.02 2.13 16 33 H 0.03 0.85 8.12 -2.39 -0.02 0.83 16 34 H 0.05 1.73 6.43 -2.39 -0.02 1.71 16 35 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 39 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 40 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 41 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 1.99 6.21 -2.39 -0.01 1.97 16 43 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -75.03 351.14 0.39 -74.64 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 0.15 Total: 7.16 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 4.40 Total: -23.79 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -6.14 Total: -87.31 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.05 Total: -17.83 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -75.03 0.39 -74.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385219020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.749 kcal (2) G-P(sol) polarization free energy of solvation -75.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds