Wall clock time and date at job start Mon Mar 30 2020 05:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46846 * 111.00026 * 2 1 4 4 C 1.53051 * 109.51087 * 185.87124 * 3 2 1 5 5 C 1.53043 * 109.26621 * 300.90367 * 4 3 2 6 6 C 1.53055 * 109.28623 * 57.58645 * 5 4 3 7 7 C 1.46840 * 110.99476 * 124.25316 * 2 1 3 8 8 C 1.53013 * 109.56276 * 177.60780 * 5 4 3 9 9 N 1.47033 * 109.26071 * 176.77624 * 8 5 4 10 10 C 1.46901 * 110.99607 * 177.73497 * 9 8 5 11 11 C 1.53000 * 109.46769 * 170.00074 * 10 9 8 12 12 C 1.50706 * 109.46735 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99928 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99611 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00327 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99743 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46999 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46979 * 120.00025 * 16 14 12 19 19 H 1.48498 * 109.46942 * 239.99938 * 16 14 12 20 20 C 1.47012 * 110.74765 * 301.50778 * 9 8 5 21 21 C 1.53092 * 109.27923 * 58.64779 * 20 9 8 22 22 O 1.42933 * 109.51410 * 297.62950 * 5 4 3 23 23 H 1.09002 * 109.46799 * 60.00401 * 1 2 3 24 24 H 1.09003 * 109.47290 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47331 * 300.00602 * 1 2 3 26 26 H 1.09002 * 109.46387 * 65.85905 * 3 2 1 27 27 H 1.09004 * 109.46601 * 305.88575 * 3 2 1 28 28 H 1.09005 * 109.50657 * 180.96778 * 4 3 2 29 29 H 1.08996 * 109.54040 * 60.86171 * 4 3 2 30 30 H 1.09006 * 109.50253 * 62.35280 * 6 5 4 31 31 H 1.08994 * 109.50255 * 182.47800 * 6 5 4 32 32 H 1.08991 * 109.46819 * 294.14483 * 7 2 1 33 33 H 1.09001 * 109.46230 * 54.12065 * 7 2 1 34 34 H 1.09001 * 109.50098 * 56.83639 * 8 5 4 35 35 H 1.09002 * 109.53758 * 296.73273 * 8 5 4 36 36 H 1.09002 * 109.47401 * 49.99781 * 10 9 8 37 37 H 1.09001 * 109.46874 * 289.99794 * 10 9 8 38 38 H 1.09001 * 109.47194 * 299.99524 * 11 10 9 39 39 H 1.08992 * 109.47399 * 59.99697 * 11 10 9 40 40 H 0.97000 * 120.00354 * 180.02562 * 15 14 12 41 41 H 1.09004 * 109.50223 * 178.59353 * 20 9 8 42 42 H 1.08999 * 109.50574 * 298.70572 * 20 9 8 43 43 H 1.09000 * 109.50950 * 183.17272 * 21 20 9 44 44 H 1.08996 * 109.51278 * 63.03241 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3339 -0.1476 5 6 4.1186 0.5349 1.0115 6 6 3.5181 -0.8729 1.0196 7 6 1.9952 -0.7716 1.1331 8 6 5.6361 0.4429 0.8385 9 7 6.2143 -0.2586 1.9942 10 6 7.6669 -0.4159 1.8416 11 6 8.2663 -0.9185 3.1565 12 6 9.7566 -1.0793 3.0002 13 1 10.2288 -0.8466 2.0572 14 6 10.5170 -1.5234 4.0611 15 7 9.9420 -1.8063 5.2095 16 14 12.3642 -1.7233 3.8671 17 1 12.7613 -1.3415 2.4881 18 1 13.0620 -0.8480 4.8430 19 1 12.7377 -3.1388 4.1164 20 6 5.8887 0.4420 3.2450 21 6 4.3676 0.5309 3.3933 22 8 3.8198 1.1883 2.2471 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.7331 1.8606 0.9378 27 1 1.5631 1.9259 -0.8327 28 1 3.9105 2.3507 -0.1303 29 1 3.7815 0.8582 -1.0923 30 1 3.7808 -1.3859 0.0944 31 1 3.9102 -1.4309 1.8699 32 1 1.7329 -0.2722 2.0657 33 1 1.5629 -1.7722 1.1231 34 1 6.0565 1.4465 0.7742 35 1 5.8663 -0.1074 -0.0738 36 1 8.1114 0.5454 1.5837 37 1 7.8732 -1.1358 1.0496 38 1 8.0600 -0.1986 3.9485 39 1 7.8218 -1.8797 3.4144 40 1 10.4771 -2.1183 5.9560 41 1 6.3052 -0.1078 4.0890 42 1 6.3112 1.4464 3.2201 43 1 4.1219 1.0987 4.2906 44 1 3.9501 -0.4729 3.4712 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592182699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:51 Heat of formation + Delta-G solvation = -40.010680 kcal Electronic energy + Delta-G solvation = -21818.997174 eV Core-core repulsion = 18770.965685 eV Total energy + Delta-G solvation = -3048.031489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.40573 -37.74583 -35.67045 -33.24003 -32.86989 -30.95145 -29.86269 -29.20058 -26.74439 -24.84267 -23.66316 -23.37732 -22.77518 -20.90308 -19.67513 -18.99229 -16.66541 -16.23187 -15.81129 -15.24822 -15.20382 -14.74911 -14.63433 -14.56402 -14.39310 -14.12809 -13.38745 -13.11426 -12.62164 -12.55153 -12.41892 -12.14802 -12.08190 -11.67830 -11.55197 -11.43195 -11.13153 -11.03559 -10.95891 -10.74802 -10.58624 -10.46891 -10.04852 -9.91558 -9.47569 -9.15027 -9.08706 -8.38857 -8.37815 -7.76028 -6.03530 -4.05732 3.29288 3.36832 3.40923 3.79655 3.96865 4.29361 4.48147 4.75552 4.85048 4.90277 5.08219 5.23450 5.30508 5.32293 5.35285 5.44128 5.47793 5.54517 5.55279 5.68450 5.69009 5.70229 5.78910 5.81207 5.88666 5.98483 6.01446 6.14452 6.24752 6.31230 6.39203 6.42511 6.47865 6.88448 6.97776 7.00926 7.40267 7.41916 7.53391 7.71630 7.81230 8.00251 8.39340 9.00890 9.58292 11.07897 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046389 B = 0.003754 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.445534 B = 7457.014031 C = 7574.153581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.061 3.939 4 C -0.101 4.101 5 C 0.122 3.878 6 C -0.130 4.130 7 C 0.059 3.941 8 C 0.032 3.968 9 N -0.534 5.534 10 C 0.062 3.938 11 C 0.022 3.978 12 C -0.521 4.521 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.016 3.984 21 C 0.062 3.938 22 O -0.380 6.380 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.023 0.977 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.035 0.965 35 H 0.079 0.921 36 H 0.020 0.980 37 H 0.064 0.936 38 H 0.019 0.981 39 H 0.025 0.975 40 H 0.260 0.740 41 H 0.101 0.899 42 H 0.035 0.965 43 H 0.091 0.909 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.377 5.083 -8.617 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.067 4.067 4 C -0.139 4.139 5 C 0.083 3.917 6 C -0.168 4.168 7 C -0.069 4.069 8 C -0.097 4.097 9 N -0.259 5.259 10 C -0.064 4.064 11 C -0.016 4.016 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.112 4.112 21 C -0.015 4.015 22 O -0.299 6.299 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.041 0.959 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.097 0.903 36 H 0.038 0.962 37 H 0.082 0.918 38 H 0.038 0.962 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.119 0.881 42 H 0.053 0.947 43 H 0.109 0.891 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.492 4.492 -8.840 20.107 hybrid contribution 1.401 0.827 0.736 1.785 sum -16.091 5.319 -8.104 18.786 Atomic orbital electron populations 1.22322 0.87683 1.01835 1.00382 1.61969 1.07241 1.13929 1.43807 1.21985 0.95018 0.89065 1.00638 1.21563 0.94696 1.00498 0.97123 1.21457 0.93103 0.92309 0.84868 1.22030 0.93690 0.97056 1.04054 1.22056 0.95754 0.97598 0.91496 1.22684 0.94161 0.97343 0.95509 1.62357 1.14472 1.48190 1.00869 1.22351 0.83397 0.98720 1.01978 1.19229 0.94927 0.96873 0.90534 1.21215 0.92545 1.44418 0.97828 0.92691 1.24993 0.98635 0.95409 0.95285 1.69966 1.35552 1.45491 1.02280 0.86528 0.85545 0.77753 0.78131 1.19747 1.21038 1.20943 1.22833 0.95542 0.97740 0.95088 1.22717 0.92906 0.97810 0.88073 1.87925 1.75751 1.51988 1.14267 0.91601 0.91546 0.95854 0.94046 0.91100 0.90926 0.89816 0.90496 0.89562 0.94485 0.91095 0.94687 0.90252 0.96165 0.91787 0.96239 0.95690 0.93017 0.88079 0.94660 0.89078 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.59 60.07 0.58 0.81 16 2 N -0.54 -6.07 4.91 -242.95 -1.19 -7.26 16 3 C 0.06 0.66 5.33 -3.83 -0.02 0.64 16 4 C -0.10 -1.17 5.11 -26.68 -0.14 -1.30 16 5 C 0.12 1.67 0.68 -90.56 -0.06 1.61 16 6 C -0.13 -1.71 4.47 -26.68 -0.12 -1.83 16 7 C 0.06 0.69 5.33 -3.83 -0.02 0.67 16 8 C 0.03 0.49 4.32 -3.74 -0.02 0.48 16 9 N -0.53 -9.71 4.30 -234.35 -1.01 -10.72 16 10 C 0.06 1.32 5.22 -3.82 -0.02 1.30 16 11 C 0.02 0.55 4.24 -27.88 -0.12 0.43 16 12 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 13 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 16 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 20 C 0.02 0.28 4.94 -3.72 -0.02 0.27 16 21 C 0.06 0.91 6.61 37.20 0.25 1.15 16 22 O -0.38 -5.67 9.14 -35.23 -0.32 -5.99 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 25 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 26 H 0.04 0.50 7.76 -51.93 -0.40 0.10 16 27 H 0.07 0.67 8.12 -51.93 -0.42 0.24 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.09 1.25 6.09 -51.93 -0.32 0.94 16 32 H 0.04 0.47 7.76 -51.93 -0.40 0.07 16 33 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.02 0.43 8.08 -51.93 -0.42 0.01 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.02 0.52 6.28 -51.93 -0.33 0.19 16 39 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.10 1.96 6.05 -51.93 -0.31 1.65 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.06 0.84 6.45 -51.93 -0.33 0.50 16 LS Contribution 331.30 15.07 4.99 4.99 Total: -1.00 -29.84 331.30 -9.90 -39.74 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.97 Total: -2.23 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -0.12 Total: -9.24 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: -1.46 Total: -43.86 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.32 Total: -5.99 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.84 -9.90 -39.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592182699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.269 kcal (2) G-P(sol) polarization free energy of solvation -29.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds