Wall clock time and date at job start Mon Mar 30 2020 05:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46846 * 111.00026 * 2 1 4 4 C 1.53051 * 109.51087 * 185.87124 * 3 2 1 5 5 C 1.53043 * 109.26621 * 300.90367 * 4 3 2 6 6 C 1.53055 * 109.28623 * 57.58645 * 5 4 3 7 7 C 1.46840 * 110.99476 * 124.25316 * 2 1 3 8 8 C 1.53013 * 109.56276 * 177.60780 * 5 4 3 9 9 N 1.47033 * 109.26071 * 176.77624 * 8 5 4 10 10 C 1.46901 * 110.99607 * 177.73497 * 9 8 5 11 11 C 1.53000 * 109.46769 * 170.00074 * 10 9 8 12 12 C 1.50706 * 109.46735 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99928 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99611 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00327 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99743 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46999 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46979 * 120.00025 * 16 14 12 19 19 H 1.48498 * 109.46942 * 239.99938 * 16 14 12 20 20 C 1.47012 * 110.74765 * 301.50778 * 9 8 5 21 21 C 1.53092 * 109.27923 * 58.64779 * 20 9 8 22 22 O 1.42933 * 109.51410 * 297.62950 * 5 4 3 23 23 H 1.09002 * 109.46799 * 60.00401 * 1 2 3 24 24 H 1.09003 * 109.47290 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47331 * 300.00602 * 1 2 3 26 26 H 1.09002 * 109.46387 * 65.85905 * 3 2 1 27 27 H 1.09004 * 109.46601 * 305.88575 * 3 2 1 28 28 H 1.09005 * 109.50657 * 180.96778 * 4 3 2 29 29 H 1.08996 * 109.54040 * 60.86171 * 4 3 2 30 30 H 1.09006 * 109.50253 * 62.35280 * 6 5 4 31 31 H 1.08994 * 109.50255 * 182.47800 * 6 5 4 32 32 H 1.08991 * 109.46819 * 294.14483 * 7 2 1 33 33 H 1.09001 * 109.46230 * 54.12065 * 7 2 1 34 34 H 1.09001 * 109.50098 * 56.83639 * 8 5 4 35 35 H 1.09002 * 109.53758 * 296.73273 * 8 5 4 36 36 H 1.09002 * 109.47401 * 49.99781 * 10 9 8 37 37 H 1.09001 * 109.46874 * 289.99794 * 10 9 8 38 38 H 1.09001 * 109.47194 * 299.99524 * 11 10 9 39 39 H 1.08992 * 109.47399 * 59.99697 * 11 10 9 40 40 H 0.97000 * 120.00354 * 180.02562 * 15 14 12 41 41 H 1.09004 * 109.50223 * 178.59353 * 20 9 8 42 42 H 1.08999 * 109.50574 * 298.70572 * 20 9 8 43 43 H 1.09000 * 109.50950 * 183.17272 * 21 20 9 44 44 H 1.08996 * 109.51278 * 63.03241 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3339 -0.1476 5 6 4.1186 0.5349 1.0115 6 6 3.5181 -0.8729 1.0196 7 6 1.9952 -0.7716 1.1331 8 6 5.6361 0.4429 0.8385 9 7 6.2143 -0.2586 1.9942 10 6 7.6669 -0.4159 1.8416 11 6 8.2663 -0.9185 3.1565 12 6 9.7566 -1.0793 3.0002 13 1 10.2288 -0.8466 2.0572 14 6 10.5170 -1.5234 4.0611 15 7 9.9420 -1.8063 5.2095 16 14 12.3642 -1.7233 3.8671 17 1 12.7613 -1.3415 2.4881 18 1 13.0620 -0.8480 4.8430 19 1 12.7377 -3.1388 4.1164 20 6 5.8887 0.4420 3.2450 21 6 4.3676 0.5309 3.3933 22 8 3.8198 1.1883 2.2471 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.7331 1.8606 0.9378 27 1 1.5631 1.9259 -0.8327 28 1 3.9105 2.3507 -0.1303 29 1 3.7815 0.8582 -1.0923 30 1 3.7808 -1.3859 0.0944 31 1 3.9102 -1.4309 1.8699 32 1 1.7329 -0.2722 2.0657 33 1 1.5629 -1.7722 1.1231 34 1 6.0565 1.4465 0.7742 35 1 5.8663 -0.1074 -0.0738 36 1 8.1114 0.5454 1.5837 37 1 7.8732 -1.1358 1.0496 38 1 8.0600 -0.1986 3.9485 39 1 7.8218 -1.8797 3.4144 40 1 10.4771 -2.1183 5.9560 41 1 6.3052 -0.1078 4.0890 42 1 6.3112 1.4464 3.2201 43 1 4.1219 1.0987 4.2906 44 1 3.9501 -0.4729 3.4712 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592182699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:50 Heat of formation + Delta-G solvation = -60.442491 kcal Electronic energy + Delta-G solvation = -21819.883164 eV Core-core repulsion = 18770.965685 eV Total energy + Delta-G solvation = -3048.917479 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.56500 -38.85916 -37.09788 -35.03801 -34.19337 -31.99549 -31.64394 -30.37437 -28.14632 -26.25677 -25.06528 -24.55511 -23.97148 -22.25142 -21.12693 -20.17630 -18.66783 -17.41779 -17.05327 -16.67391 -16.35201 -16.26055 -15.90439 -15.76309 -15.55117 -15.38917 -14.90785 -14.46312 -14.16801 -13.73490 -13.56636 -13.37281 -13.27511 -13.20523 -12.89555 -12.64769 -12.56151 -12.44407 -12.38867 -12.05406 -11.96198 -11.87341 -11.61189 -11.48912 -11.23358 -10.91541 -10.56921 -10.43749 -9.29259 -9.23023 -8.22562 -6.33564 1.39101 1.39449 1.52689 2.38392 2.72125 2.93618 3.07384 3.11106 3.69145 3.82434 3.84779 4.04268 4.14416 4.21826 4.29480 4.36241 4.39151 4.49212 4.57698 4.61486 4.61968 4.65395 4.69670 4.71251 4.82479 4.87447 4.91651 4.92710 4.99202 5.04398 5.05043 5.10107 5.29753 5.32084 5.41821 5.60652 5.74331 5.98553 6.12780 6.14203 6.18066 6.24987 6.27917 6.82446 7.35536 8.89477 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046389 B = 0.003754 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.445534 B = 7457.014031 C = 7574.153581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.551 5.551 3 C 0.064 3.936 4 C -0.098 4.098 5 C 0.122 3.878 6 C -0.126 4.126 7 C 0.064 3.936 8 C 0.032 3.968 9 N -0.537 5.537 10 C 0.077 3.923 11 C 0.032 3.968 12 C -0.545 4.545 13 H 0.058 0.942 14 C 0.003 3.997 15 N -0.929 5.929 16 Si 0.966 3.034 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.277 1.277 20 C 0.019 3.981 21 C 0.071 3.929 22 O -0.384 6.384 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.022 0.978 26 H 0.029 0.971 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.080 0.920 34 H 0.031 0.969 35 H 0.090 0.910 36 H 0.017 0.983 37 H 0.067 0.933 38 H 0.000 1.000 39 H -0.004 1.004 40 H 0.264 0.736 41 H 0.075 0.925 42 H 0.025 0.975 43 H 0.111 0.889 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.972 5.479 -10.119 21.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.276 5.276 3 C -0.064 4.064 4 C -0.136 4.136 5 C 0.082 3.918 6 C -0.164 4.164 7 C -0.064 4.064 8 C -0.096 4.096 9 N -0.262 5.262 10 C -0.050 4.050 11 C -0.005 4.005 12 C -0.584 4.584 13 H 0.077 0.923 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.790 3.210 17 H -0.187 1.187 18 H -0.204 1.204 19 H -0.203 1.203 20 C -0.109 4.109 21 C -0.006 4.006 22 O -0.303 6.303 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.041 0.959 26 H 0.047 0.953 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.099 0.901 34 H 0.049 0.951 35 H 0.108 0.892 36 H 0.036 0.964 37 H 0.085 0.915 38 H 0.018 0.982 39 H 0.014 0.986 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.043 0.957 43 H 0.129 0.871 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.109 4.896 -10.358 21.428 hybrid contribution 1.543 0.702 1.204 2.079 sum -16.566 5.598 -9.153 19.737 Atomic orbital electron populations 1.22388 0.86206 1.02617 1.01020 1.61996 1.08625 1.13872 1.43141 1.21983 0.94453 0.89138 1.00827 1.21583 0.95223 1.00424 0.96344 1.21589 0.91773 0.93181 0.85220 1.21951 0.94790 0.96347 1.03285 1.21970 0.94674 0.98262 0.91459 1.22799 0.95420 0.96825 0.94576 1.62314 1.12403 1.49260 1.02215 1.22024 0.85316 0.98284 0.99361 1.19031 0.94277 0.94923 0.92287 1.21635 0.93921 1.44655 0.98165 0.92337 1.25935 1.03916 0.94846 0.94840 1.70093 1.37606 1.46104 1.03143 0.85391 0.79119 0.77918 0.78560 1.18672 1.20378 1.20252 1.22771 0.97724 0.96423 0.93981 1.22668 0.90413 0.98561 0.88983 1.87933 1.75469 1.52280 1.14607 0.90195 0.90775 0.95935 0.95309 0.89089 0.90480 0.88757 0.90342 0.91370 0.95480 0.90123 0.95096 0.89162 0.96448 0.91503 0.98150 0.98596 0.92708 0.90682 0.95706 0.87111 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.59 127.69 1.22 1.62 16 2 N -0.55 -10.98 4.91 -922.54 -4.53 -15.51 16 3 C 0.06 1.24 5.33 86.33 0.46 1.70 16 4 C -0.10 -2.05 5.11 30.63 0.16 -1.89 16 5 C 0.12 3.18 0.68 -10.76 -0.01 3.17 16 6 C -0.13 -3.16 4.47 30.63 0.14 -3.03 16 7 C 0.06 1.41 5.33 86.33 0.46 1.87 16 8 C 0.03 0.97 4.32 86.28 0.37 1.34 16 9 N -0.54 -19.80 4.30 -895.34 -3.85 -23.65 16 10 C 0.08 3.35 5.22 86.30 0.45 3.80 16 11 C 0.03 1.71 4.24 29.85 0.13 1.84 16 12 C -0.55 -31.28 9.11 25.60 0.23 -31.05 16 13 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 14 C 0.00 0.16 5.46 84.66 0.46 0.62 16 15 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 16 Si 0.97 44.37 29.54 68.60 2.03 46.39 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 C 0.02 0.70 4.94 86.31 0.43 1.13 16 21 C 0.07 2.05 6.61 72.01 0.48 2.53 16 22 O -0.38 -11.04 9.14 -148.98 -1.36 -12.40 16 23 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 25 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.03 0.64 7.76 -2.39 -0.02 0.62 16 27 H 0.09 1.42 8.12 -2.38 -0.02 1.40 16 28 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.07 1.96 6.09 -2.39 -0.01 1.95 16 32 H 0.03 0.65 7.76 -2.39 -0.02 0.63 16 33 H 0.08 1.60 8.08 -2.39 -0.02 1.59 16 34 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.02 0.75 8.08 -2.39 -0.02 0.73 16 37 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 38 H 0.00 0.01 6.28 -2.39 -0.01 0.00 16 39 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 40 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 41 H 0.07 3.09 6.05 -2.38 -0.01 3.08 16 42 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.11 2.77 8.14 -2.39 -0.02 2.76 16 44 H 0.06 1.76 6.45 -2.39 -0.02 1.75 16 Total: -1.00 -63.99 331.30 -1.51 -65.50 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.94 Total: 12.18 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 4.98 Total: -16.36 kcal Atomic # 7 Polarization: -87.21 SS G_CDS: -8.09 Total: -95.30 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -1.36 Total: -12.40 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -63.99 -1.51 -65.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592182699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.056 kcal (2) G-P(sol) polarization free energy of solvation -63.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds