Wall clock time and date at job start Mon Mar 30 2020 04:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47022 * 2 1 4 4 C 1.34777 * 119.99832 * 90.00138 * 3 2 1 5 5 O 1.21278 * 119.99854 * 180.02562 * 4 3 2 6 6 C 1.50703 * 120.00161 * 359.97438 * 4 3 2 7 7 C 1.53000 * 109.46912 * 180.02562 * 6 4 3 8 8 C 1.50706 * 109.46735 * 180.02562 * 7 6 4 9 9 H 1.07996 * 119.99928 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99611 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99711 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 120.00219 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.46794 * 90.00022 * 12 10 8 14 14 H 1.48502 * 109.47140 * 210.00005 * 12 10 8 15 15 H 1.48501 * 109.46982 * 330.00118 * 12 10 8 16 16 C 1.46496 * 119.99896 * 269.99674 * 3 2 1 17 17 H 1.08998 * 110.28783 * 0.67325 * 16 3 2 18 18 C 1.54259 * 110.32521 * 238.54807 * 16 3 2 19 19 C 1.54376 * 105.05889 * 241.10684 * 18 16 3 20 20 N 1.48561 * 104.59820 * 23.85230 * 19 18 16 21 21 C 1.46896 * 111.00128 * 200.96240 * 20 19 18 22 22 C 1.52996 * 109.47103 * 290.12439 * 21 20 19 23 23 C 1.48559 * 104.21916 * 320.51522 * 20 19 18 24 24 H 1.09000 * 109.47099 * 60.00377 * 1 2 3 25 25 H 1.09006 * 109.47010 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47443 * 299.99879 * 1 2 3 27 27 H 1.08997 * 109.47614 * 239.99880 * 2 1 3 28 28 H 1.09000 * 109.47099 * 119.99622 * 2 1 3 29 29 H 1.09002 * 109.47152 * 60.00245 * 6 4 3 30 30 H 1.09001 * 109.46980 * 300.00345 * 6 4 3 31 31 H 1.09001 * 109.47194 * 299.99742 * 7 6 4 32 32 H 1.08992 * 109.47399 * 59.99914 * 7 6 4 33 33 H 0.97000 * 119.99684 * 179.97438 * 11 10 8 34 34 H 1.09003 * 110.32033 * 359.97438 * 18 16 3 35 35 H 1.09001 * 110.32506 * 122.10723 * 18 16 3 36 36 H 1.09002 * 110.41518 * 142.62833 * 19 18 16 37 37 H 1.09005 * 110.41156 * 264.95379 * 19 18 16 38 38 H 1.08998 * 109.47280 * 50.12306 * 21 20 19 39 39 H 1.09004 * 109.47585 * 170.12254 * 21 20 19 40 40 H 1.09004 * 109.47640 * 59.99969 * 22 21 20 41 41 H 1.09008 * 109.47541 * 180.02562 * 22 21 20 42 42 H 1.08996 * 109.47571 * 299.99662 * 22 21 20 43 43 H 1.08995 * 110.41523 * 280.70499 * 23 20 19 44 44 H 1.08998 * 110.41322 * 158.25805 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2429 2.0166 1.1672 5 8 2.6467 3.1602 1.1672 6 6 1.9912 1.3063 2.4723 7 6 2.3222 2.2439 3.6352 8 6 2.0711 1.5334 4.9404 9 1 1.7110 0.5152 4.9403 10 6 2.3010 2.1834 6.1344 11 7 2.0814 1.5636 7.2733 12 14 2.9244 3.9443 6.1344 13 1 1.7698 4.8781 6.1342 14 1 3.7494 4.1774 7.3470 15 1 3.7496 4.1773 4.9220 16 6 2.2625 2.0718 -1.2687 17 1 2.0191 1.4193 -2.1071 18 6 3.7331 2.5294 -1.3553 19 6 3.6685 4.0674 -1.4714 20 7 2.3601 4.4336 -0.8704 21 6 1.9211 5.7574 -1.3315 22 6 2.8210 6.8341 -0.7219 23 6 1.4330 3.3719 -1.3398 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.6211 0.4186 2.5303 30 1 0.9431 1.0125 2.5299 31 1 3.3702 2.5381 3.5779 32 1 1.6921 3.1313 3.5771 33 1 2.2435 2.0207 8.1134 34 1 4.2731 2.2405 -0.4536 35 1 4.2115 2.1014 -2.2362 36 1 4.4848 4.5255 -0.9129 37 1 3.7068 4.3716 -2.5174 38 1 1.9851 5.8032 -2.4187 39 1 0.8901 5.9270 -1.0209 40 1 3.8520 6.6647 -1.0326 41 1 2.4950 7.8165 -1.0637 42 1 2.7570 6.7885 0.3652 43 1 1.1194 3.5672 -2.3653 44 1 0.5662 3.3062 -0.6823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598040742.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:02 Heat of formation + Delta-G solvation = -23.399667 kcal Electronic energy + Delta-G solvation = -21965.076110 eV Core-core repulsion = 18917.764929 eV Total energy + Delta-G solvation = -3047.311182 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16444 -37.85536 -35.48917 -33.55609 -32.86276 -31.03365 -30.03270 -29.10547 -27.84263 -25.77492 -23.22492 -22.94802 -21.85428 -20.60128 -20.22348 -18.10991 -17.01627 -16.30418 -16.13741 -15.40033 -15.24028 -14.60365 -14.44115 -14.00425 -13.70133 -13.34891 -13.22404 -12.90213 -12.67736 -12.62803 -12.50452 -12.15951 -11.85114 -11.57295 -11.42631 -11.37581 -11.22885 -11.19837 -11.03746 -10.84604 -10.78724 -10.67753 -9.98959 -9.89891 -9.67943 -9.09661 -8.76177 -8.44613 -8.34549 -8.00818 -5.96876 -3.94583 3.32614 3.41886 3.43160 3.49274 3.61825 4.10123 4.57218 4.64793 4.73047 4.94283 5.10266 5.15031 5.22274 5.28040 5.32501 5.35785 5.39268 5.47179 5.54100 5.55861 5.62610 5.74063 5.79364 5.84469 5.90748 5.92219 6.02707 6.07219 6.18592 6.23430 6.24494 6.30347 6.35365 6.82172 6.91281 7.11022 7.25736 7.48985 7.55782 7.83981 7.92792 8.58570 8.96154 9.08193 9.67063 11.16149 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.006291 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.268508 B = 4449.751271 C = 5692.150121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 N -0.623 5.623 4 C 0.496 3.504 5 O -0.484 6.484 6 C -0.120 4.120 7 C 0.004 3.996 8 C -0.522 4.522 9 H 0.071 0.929 10 C 0.068 3.932 11 N -0.906 5.906 12 Si 0.877 3.123 13 H -0.278 1.278 14 H -0.290 1.290 15 H -0.260 1.260 16 C 0.148 3.852 17 H 0.087 0.913 18 C -0.129 4.129 19 C 0.045 3.955 20 N -0.469 5.469 21 C 0.040 3.960 22 C -0.144 4.144 23 C 0.029 3.971 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.022 0.978 32 H 0.018 0.982 33 H 0.262 0.738 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.032 0.968 38 H 0.024 0.976 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.039 0.961 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.522 0.973 -22.143 22.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.015 4.015 3 N -0.360 5.360 4 C 0.285 3.715 5 O -0.354 6.354 6 C -0.160 4.160 7 C -0.034 4.034 8 C -0.560 4.560 9 H 0.089 0.911 10 C -0.133 4.133 11 N -0.545 5.545 12 Si 0.705 3.295 13 H -0.204 1.204 14 H -0.216 1.216 15 H -0.184 1.184 16 C 0.044 3.956 17 H 0.105 0.895 18 C -0.168 4.168 19 C -0.084 4.084 20 N -0.193 5.193 21 C -0.088 4.088 22 C -0.201 4.201 23 C -0.101 4.101 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.042 0.958 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.255 1.692 -21.332 21.401 hybrid contribution 0.081 0.736 -0.807 1.095 sum -0.174 2.428 -22.139 22.272 Atomic orbital electron populations 1.22233 0.96330 1.01933 1.02510 1.21496 0.94219 0.82916 1.02897 1.48295 1.68476 1.13889 1.05300 1.21434 0.77525 0.87412 0.85177 1.90830 1.41722 1.16320 1.86564 1.21693 1.02320 1.00302 0.91706 1.19336 0.97255 0.94668 0.92124 1.21152 1.44645 1.01143 0.89016 0.91110 1.24969 0.94867 0.97974 0.95466 1.69919 1.49704 1.37526 0.97391 0.86794 0.79620 0.85418 0.77717 1.20354 1.21622 1.18418 1.21592 0.94547 0.93087 0.86417 0.89539 1.22654 0.96502 0.95456 1.02222 1.22954 0.94030 0.95272 0.96102 1.65625 1.01089 0.99973 1.52630 1.22241 0.99697 0.90679 0.96218 1.21698 0.99191 0.96770 1.02486 1.23402 0.96944 0.91883 0.97825 0.92919 0.91866 0.91831 0.91284 0.89833 0.90347 0.90298 0.95996 0.96352 0.92838 0.90116 0.91708 0.90364 0.95023 0.95777 0.91249 0.93056 0.92938 0.91411 0.94284 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 10.24 37.15 0.38 -1.37 16 2 C 0.11 1.18 5.91 -4.04 -0.02 1.15 16 3 N -0.62 -8.66 2.41 -164.54 -0.40 -9.05 16 4 C 0.50 9.13 6.74 -10.98 -0.07 9.06 16 5 O -0.48 -10.36 11.94 5.56 0.07 -10.29 16 6 C -0.12 -2.41 4.19 -27.88 -0.12 -2.53 16 7 C 0.00 0.10 3.33 -27.88 -0.09 0.01 16 8 C -0.52 -15.19 9.66 -34.44 -0.33 -15.53 16 9 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 10 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 11 N -0.91 -28.52 13.96 55.43 0.77 -27.75 16 12 Si 0.88 23.10 27.47 -169.99 -4.67 18.43 16 13 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 14 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 15 H -0.26 -6.83 6.54 56.52 0.37 -6.46 16 16 C 0.15 1.81 3.57 -66.55 -0.24 1.57 16 17 H 0.09 0.82 7.85 -51.93 -0.41 0.41 16 18 C -0.13 -1.62 6.04 -25.35 -0.15 -1.77 16 19 C 0.04 0.58 5.49 -2.18 -0.01 0.57 16 20 N -0.47 -6.96 3.13 -229.98 -0.72 -7.68 16 21 C 0.04 0.51 5.53 -3.83 -0.02 0.49 16 22 C -0.14 -1.78 9.97 37.16 0.37 -1.41 16 23 C 0.03 0.37 5.50 -2.18 -0.01 0.36 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.78 7.22 -51.93 -0.37 0.40 16 27 H 0.07 0.59 7.95 -51.93 -0.41 0.18 16 28 H 0.08 0.95 6.44 -51.93 -0.33 0.62 16 29 H 0.08 1.48 7.40 -51.93 -0.38 1.10 16 30 H 0.08 1.51 7.18 -51.93 -0.37 1.13 16 31 H 0.02 0.58 7.15 -51.93 -0.37 0.21 16 32 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 33 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 34 H 0.08 1.23 7.11 -51.93 -0.37 0.86 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 1.11 7.76 -51.93 -0.40 0.71 16 37 H 0.03 0.36 7.83 -51.93 -0.41 -0.05 16 38 H 0.02 0.27 7.88 -51.93 -0.41 -0.14 16 39 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 40 H 0.05 0.61 7.26 -51.93 -0.38 0.24 16 41 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.04 0.43 8.00 -51.93 -0.42 0.02 16 44 H 0.08 1.20 7.98 -51.93 -0.41 0.79 16 LS Contribution 338.98 15.07 5.11 5.11 Total: -1.00 -33.53 338.98 -8.23 -41.76 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -7.97 Total: -3.09 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -0.42 Total: -7.44 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -0.34 Total: -44.48 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.07 Total: -10.29 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.67 Total: 18.43 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.53 -8.23 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598040742.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.356 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds