Wall clock time and date at job start Mon Mar 30 2020 04:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47022 * 2 1 4 4 C 1.34777 * 119.99832 * 90.00138 * 3 2 1 5 5 O 1.21278 * 119.99854 * 180.02562 * 4 3 2 6 6 C 1.50703 * 120.00161 * 359.97438 * 4 3 2 7 7 C 1.53000 * 109.46912 * 180.02562 * 6 4 3 8 8 C 1.50706 * 109.46735 * 180.02562 * 7 6 4 9 9 H 1.07996 * 119.99928 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99611 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99711 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 120.00219 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.46794 * 90.00022 * 12 10 8 14 14 H 1.48502 * 109.47140 * 210.00005 * 12 10 8 15 15 H 1.48501 * 109.46982 * 330.00118 * 12 10 8 16 16 C 1.46496 * 119.99896 * 269.99674 * 3 2 1 17 17 H 1.08998 * 110.28783 * 0.67325 * 16 3 2 18 18 C 1.54259 * 110.32521 * 238.54807 * 16 3 2 19 19 C 1.54376 * 105.05889 * 241.10684 * 18 16 3 20 20 N 1.48561 * 104.59820 * 23.85230 * 19 18 16 21 21 C 1.46896 * 111.00128 * 200.96240 * 20 19 18 22 22 C 1.52996 * 109.47103 * 290.12439 * 21 20 19 23 23 C 1.48559 * 104.21916 * 320.51522 * 20 19 18 24 24 H 1.09000 * 109.47099 * 60.00377 * 1 2 3 25 25 H 1.09006 * 109.47010 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47443 * 299.99879 * 1 2 3 27 27 H 1.08997 * 109.47614 * 239.99880 * 2 1 3 28 28 H 1.09000 * 109.47099 * 119.99622 * 2 1 3 29 29 H 1.09002 * 109.47152 * 60.00245 * 6 4 3 30 30 H 1.09001 * 109.46980 * 300.00345 * 6 4 3 31 31 H 1.09001 * 109.47194 * 299.99742 * 7 6 4 32 32 H 1.08992 * 109.47399 * 59.99914 * 7 6 4 33 33 H 0.97000 * 119.99684 * 179.97438 * 11 10 8 34 34 H 1.09003 * 110.32033 * 359.97438 * 18 16 3 35 35 H 1.09001 * 110.32506 * 122.10723 * 18 16 3 36 36 H 1.09002 * 110.41518 * 142.62833 * 19 18 16 37 37 H 1.09005 * 110.41156 * 264.95379 * 19 18 16 38 38 H 1.08998 * 109.47280 * 50.12306 * 21 20 19 39 39 H 1.09004 * 109.47585 * 170.12254 * 21 20 19 40 40 H 1.09004 * 109.47640 * 59.99969 * 22 21 20 41 41 H 1.09008 * 109.47541 * 180.02562 * 22 21 20 42 42 H 1.08996 * 109.47571 * 299.99662 * 22 21 20 43 43 H 1.08995 * 110.41523 * 280.70499 * 23 20 19 44 44 H 1.08998 * 110.41322 * 158.25805 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2429 2.0166 1.1672 5 8 2.6467 3.1602 1.1672 6 6 1.9912 1.3063 2.4723 7 6 2.3222 2.2439 3.6352 8 6 2.0711 1.5334 4.9404 9 1 1.7110 0.5152 4.9403 10 6 2.3010 2.1834 6.1344 11 7 2.0814 1.5636 7.2733 12 14 2.9244 3.9443 6.1344 13 1 1.7698 4.8781 6.1342 14 1 3.7494 4.1774 7.3470 15 1 3.7496 4.1773 4.9220 16 6 2.2625 2.0718 -1.2687 17 1 2.0191 1.4193 -2.1071 18 6 3.7331 2.5294 -1.3553 19 6 3.6685 4.0674 -1.4714 20 7 2.3601 4.4336 -0.8704 21 6 1.9211 5.7574 -1.3315 22 6 2.8210 6.8341 -0.7219 23 6 1.4330 3.3719 -1.3398 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.6211 0.4186 2.5303 30 1 0.9431 1.0125 2.5299 31 1 3.3702 2.5381 3.5779 32 1 1.6921 3.1313 3.5771 33 1 2.2435 2.0207 8.1134 34 1 4.2731 2.2405 -0.4536 35 1 4.2115 2.1014 -2.2362 36 1 4.4848 4.5255 -0.9129 37 1 3.7068 4.3716 -2.5174 38 1 1.9851 5.8032 -2.4187 39 1 0.8901 5.9270 -1.0209 40 1 3.8520 6.6647 -1.0326 41 1 2.4950 7.8165 -1.0637 42 1 2.7570 6.7885 0.3652 43 1 1.1194 3.5672 -2.3653 44 1 0.5662 3.3062 -0.6823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598040742.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:02 Heat of formation + Delta-G solvation = -44.551773 kcal Electronic energy + Delta-G solvation = -21965.993334 eV Core-core repulsion = 18917.764929 eV Total energy + Delta-G solvation = -3048.228406 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.34263 -39.04457 -36.68255 -35.52821 -34.09552 -32.98892 -31.00454 -30.08441 -29.12830 -27.51996 -24.38284 -23.91680 -23.30191 -21.78755 -21.56684 -19.59562 -18.83097 -17.56435 -17.37572 -16.60641 -16.50034 -16.12550 -15.82739 -15.43703 -14.91910 -14.69598 -14.61335 -14.48329 -13.90695 -13.70070 -13.59959 -13.39803 -13.33143 -12.99709 -12.79463 -12.50670 -12.40843 -12.25853 -12.20632 -12.03671 -12.01040 -11.89549 -11.73751 -11.66270 -11.60716 -11.35056 -10.77889 -10.21727 -9.48397 -9.00211 -8.31796 -6.33761 1.31651 1.33012 1.49654 1.98837 2.21472 2.34594 3.04084 3.16352 3.67600 3.74882 3.95199 4.13664 4.19430 4.25950 4.33514 4.35741 4.40282 4.44855 4.53756 4.57478 4.60055 4.66886 4.70499 4.75284 4.87606 4.90568 4.97877 5.01510 5.05742 5.08448 5.13812 5.24007 5.33333 5.36540 5.45459 5.49566 5.62418 5.89001 6.14093 6.24967 6.30752 6.63952 6.72605 7.31469 7.59962 8.84133 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.006291 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.268508 B = 4449.751271 C = 5692.150121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.102 3.898 3 N -0.612 5.612 4 C 0.498 3.502 5 O -0.521 6.521 6 C -0.114 4.114 7 C 0.013 3.987 8 C -0.527 4.527 9 H 0.047 0.953 10 C 0.015 3.985 11 N -0.944 5.944 12 Si 0.938 3.062 13 H -0.271 1.271 14 H -0.277 1.277 15 H -0.263 1.263 16 C 0.146 3.854 17 H 0.129 0.871 18 C -0.126 4.126 19 C 0.047 3.953 20 N -0.508 5.508 21 C 0.041 3.959 22 C -0.139 4.139 23 C 0.031 3.969 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.035 0.965 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.007 0.993 32 H 0.003 0.997 33 H 0.267 0.733 34 H 0.047 0.953 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.035 0.965 43 H 0.066 0.934 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.542 0.767 -25.189 25.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.020 4.020 3 N -0.347 5.347 4 C 0.286 3.714 5 O -0.395 6.395 6 C -0.154 4.154 7 C -0.025 4.025 8 C -0.565 4.565 9 H 0.066 0.934 10 C -0.182 4.182 11 N -0.585 5.585 12 Si 0.763 3.237 13 H -0.196 1.196 14 H -0.202 1.202 15 H -0.187 1.187 16 C 0.042 3.958 17 H 0.147 0.853 18 C -0.165 4.165 19 C -0.081 4.081 20 N -0.232 5.232 21 C -0.087 4.087 22 C -0.197 4.197 23 C -0.098 4.098 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.054 0.946 27 H 0.124 0.876 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.025 0.975 32 H 0.022 0.978 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.054 0.946 43 H 0.084 0.916 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.290 1.450 -24.410 24.454 hybrid contribution 0.051 0.717 0.122 0.729 sum -0.240 2.167 -24.288 24.385 Atomic orbital electron populations 1.22180 0.95664 1.03002 1.01640 1.21770 0.94703 0.81179 1.04393 1.48193 1.66914 1.14877 1.04683 1.20981 0.77631 0.86869 0.85928 1.90826 1.43743 1.17704 1.87200 1.21498 1.02957 0.99522 0.91420 1.19137 0.95847 0.94858 0.92664 1.21455 1.43831 1.00422 0.90765 0.93431 1.25772 0.95261 1.01973 0.95239 1.70024 1.51027 1.39315 0.98106 0.85832 0.79303 0.80701 0.77866 1.19610 1.20235 1.18744 1.21904 0.94202 0.93432 0.86243 0.85316 1.22635 0.96545 0.95179 1.02100 1.22909 0.92674 0.95660 0.96869 1.65531 1.02202 1.01140 1.54370 1.22238 0.99143 0.89945 0.97386 1.21661 0.99516 0.98134 1.00375 1.23368 0.95922 0.91919 0.98566 0.91868 0.89839 0.94596 0.87559 0.90638 0.89314 0.89570 0.97508 0.97810 0.92408 0.93427 0.88353 0.92625 0.92589 0.93582 0.91930 0.92935 0.90774 0.94567 0.91574 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 10.24 71.98 0.74 -2.25 16 2 C 0.10 1.92 5.91 86.38 0.51 2.43 16 3 N -0.61 -15.81 2.41 -792.88 -1.91 -17.72 16 4 C 0.50 18.27 6.74 87.66 0.59 18.86 16 5 O -0.52 -22.67 11.94 -3.02 -0.04 -22.71 16 6 C -0.11 -4.62 4.19 29.85 0.13 -4.50 16 7 C 0.01 0.67 3.33 29.85 0.10 0.77 16 8 C -0.53 -31.47 9.66 25.60 0.25 -31.22 16 9 H 0.05 2.99 7.99 -2.91 -0.02 2.97 16 10 C 0.02 0.92 5.47 84.66 0.46 1.38 16 11 N -0.94 -60.39 13.96 21.45 0.30 -60.09 16 12 Si 0.94 48.52 27.47 68.60 1.88 50.41 16 13 H -0.27 -13.62 7.11 99.48 0.71 -12.91 16 14 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 15 H -0.26 -13.64 6.54 99.48 0.65 -12.99 16 16 C 0.15 3.08 3.57 45.89 0.16 3.25 16 17 H 0.13 1.70 7.85 -2.39 -0.02 1.68 16 18 C -0.13 -2.84 6.04 31.49 0.19 -2.65 16 19 C 0.05 1.15 5.49 86.45 0.47 1.63 16 20 N -0.51 -14.57 3.13 -881.51 -2.76 -17.33 16 21 C 0.04 0.99 5.53 86.30 0.48 1.47 16 22 C -0.14 -3.38 9.97 71.98 0.72 -2.67 16 23 C 0.03 0.74 5.50 86.45 0.48 1.22 16 24 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.03 0.84 7.22 -2.38 -0.02 0.82 16 27 H 0.11 1.29 7.95 -2.39 -0.02 1.28 16 28 H 0.08 1.57 6.44 -2.39 -0.02 1.56 16 29 H 0.09 3.37 7.40 -2.39 -0.02 3.35 16 30 H 0.09 3.33 7.18 -2.39 -0.02 3.31 16 31 H 0.01 0.36 7.15 -2.39 -0.02 0.34 16 32 H 0.00 0.19 7.53 -2.39 -0.02 0.17 16 33 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 34 H 0.05 1.40 7.11 -2.39 -0.02 1.39 16 35 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.58 7.76 -2.39 -0.02 1.57 16 37 H 0.06 1.08 7.83 -2.38 -0.02 1.07 16 38 H 0.05 0.90 7.88 -2.39 -0.02 0.88 16 39 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 40 H 0.05 1.23 7.26 -2.39 -0.02 1.21 16 41 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.07 1.21 8.00 -2.39 -0.02 1.19 16 44 H 0.06 1.62 7.98 -2.39 -0.02 1.60 16 Total: -1.00 -74.99 338.98 3.64 -71.35 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.89 Total: 8.37 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 5.27 Total: -12.27 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -4.37 Total: -95.14 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.04 Total: -22.71 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 1.88 Total: 50.41 kcal Total: -74.99 3.64 -71.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598040742.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.795 kcal (2) G-P(sol) polarization free energy of solvation -74.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds