Wall clock time and date at job start Mon Mar 30 2020 04:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47186 * 2 1 4 4 C 1.46501 * 119.99800 * 90.00329 * 3 2 1 5 5 C 1.52995 * 109.47289 * 270.00252 * 4 3 2 6 6 C 1.53003 * 109.47289 * 180.02562 * 5 4 3 7 7 C 1.53001 * 117.51964 * 116.28130 * 6 5 4 8 8 C 1.52999 * 60.00190 * 107.47982 * 7 6 5 9 9 C 1.34779 * 120.00549 * 270.00055 * 3 2 1 10 10 O 1.21273 * 120.00036 * 179.97438 * 9 3 2 11 11 C 1.50701 * 119.99554 * 0.02562 * 9 3 2 12 12 H 1.08995 * 109.47429 * 39.99681 * 11 9 3 13 13 N 1.46898 * 109.46833 * 159.99605 * 11 9 3 14 14 C 1.52998 * 109.47174 * 279.99564 * 11 9 3 15 15 C 1.52993 * 109.47208 * 175.00386 * 14 11 9 16 16 C 1.50706 * 109.47034 * 180.02562 * 15 14 11 17 17 H 1.07999 * 119.99859 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99759 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99767 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00073 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47287 * 90.00069 * 20 18 16 22 22 H 1.48504 * 109.47101 * 210.00009 * 20 18 16 23 23 H 1.48499 * 109.47232 * 329.99576 * 20 18 16 24 24 H 1.08995 * 109.47204 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46692 * 299.99805 * 1 2 3 26 26 H 1.08996 * 109.47176 * 59.99195 * 1 2 3 27 27 H 1.09005 * 109.46692 * 240.00195 * 2 1 3 28 28 H 1.08996 * 109.47176 * 120.00805 * 2 1 3 29 29 H 1.08999 * 109.47292 * 149.99579 * 4 3 2 30 30 H 1.09005 * 109.46856 * 29.99859 * 4 3 2 31 31 H 1.08999 * 109.47504 * 59.99456 * 5 4 3 32 32 H 1.09005 * 109.46851 * 299.99610 * 5 4 3 33 33 H 1.09002 * 115.54973 * 330.57913 * 6 5 4 34 34 H 1.09001 * 117.49733 * 214.97413 * 7 6 5 35 35 H 1.08995 * 117.49577 * 359.97438 * 7 6 5 36 36 H 1.09004 * 117.50150 * 252.51496 * 8 7 6 37 37 H 1.09004 * 117.49681 * 107.48417 * 8 7 6 38 38 H 1.00899 * 111.00561 * 296.04620 * 13 11 9 39 39 H 1.00901 * 110.99922 * 60.00409 * 13 11 9 40 40 H 1.09005 * 109.47193 * 295.00587 * 14 11 9 41 41 H 1.09006 * 109.46885 * 55.00236 * 14 11 9 42 42 H 1.09003 * 109.47034 * 299.99683 * 15 14 11 43 43 H 1.08993 * 109.47662 * 60.00168 * 15 14 11 44 44 H 0.96996 * 120.00113 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 0.9877 2.7929 1.7106 6 6 1.2429 3.5146 3.0353 7 6 1.1453 5.0415 3.0388 8 6 0.0524 4.2036 3.7053 9 6 2.2430 2.0166 -1.1672 10 8 2.6469 3.1602 -1.1670 11 6 1.9913 1.3065 -2.4723 12 1 1.0806 0.7129 -2.3932 13 7 1.8389 2.2964 -3.5469 14 6 3.1729 0.3876 -2.7891 15 6 2.8636 -0.4255 -4.0476 16 6 4.0272 -1.3310 -4.3593 17 1 4.9000 -1.3271 -3.7231 18 6 3.9772 -2.1651 -5.4561 19 7 4.9925 -2.9556 -5.7278 20 14 2.4674 -2.1722 -6.5560 21 1 2.6383 -1.1692 -7.6377 22 1 2.2969 -3.5208 -7.1538 23 1 1.2668 -1.8323 -5.7509 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.0646 2.7983 1.1385 30 1 2.5507 1.3449 2.0284 31 1 0.1857 2.0663 1.8409 32 1 0.6996 3.5197 0.9510 33 1 1.9897 3.0566 3.6839 34 1 1.8279 5.5880 3.6896 35 1 0.8996 5.5322 2.0971 36 1 -0.9127 4.1429 3.2021 37 1 0.0159 4.1988 4.7947 38 1 1.0262 2.8744 -3.3936 39 1 2.6708 2.8596 -3.6403 40 1 4.0665 0.9892 -2.9558 41 1 3.3416 -0.2892 -1.9515 42 1 1.9700 -1.0272 -3.8809 43 1 2.6949 0.2512 -4.8852 44 1 4.9576 -3.5421 -6.4995 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691579528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:49 Heat of formation + Delta-G solvation = -29.816239 kcal Electronic energy + Delta-G solvation = -21077.075635 eV Core-core repulsion = 18029.486210 eV Total energy + Delta-G solvation = -3047.589425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.21726 -37.90532 -36.08821 -35.44136 -32.78331 -31.68938 -30.50520 -29.77832 -26.87333 -24.56981 -23.53574 -22.64513 -22.29856 -20.68894 -20.10350 -18.99628 -17.31812 -16.76393 -16.28664 -15.93748 -15.51421 -14.88053 -14.67542 -14.14954 -13.95138 -13.84968 -13.82017 -13.34293 -12.93405 -12.57599 -12.54955 -12.33666 -12.06457 -11.82592 -11.68488 -11.52347 -11.45694 -11.10127 -10.89003 -10.80745 -10.59980 -10.28714 -10.10509 -9.92636 -9.70555 -9.57135 -9.11115 -8.70631 -8.50209 -8.36077 -5.99219 -3.96808 2.72084 3.00910 3.37732 3.44235 3.49506 3.53240 4.41814 4.51497 4.58585 4.64360 4.67720 4.86918 4.88793 5.00368 5.11677 5.13391 5.30083 5.33417 5.35658 5.36987 5.40652 5.51074 5.63024 5.63408 5.67938 5.71634 5.76773 5.85138 5.92362 6.06167 6.14866 6.29276 6.47717 6.57293 6.87966 7.25456 7.38671 7.45186 7.57524 7.68095 7.86708 8.25480 8.58368 9.05584 9.63844 11.14304 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034316 B = 0.003773 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.738364 B = 7420.286875 C = 7563.897048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.094 3.906 3 N -0.611 5.611 4 C 0.116 3.884 5 C -0.103 4.103 6 C -0.150 4.150 7 C -0.179 4.179 8 C -0.182 4.182 9 C 0.486 3.514 10 O -0.551 6.551 11 C 0.072 3.928 12 H 0.099 0.901 13 N -0.812 5.812 14 C -0.089 4.089 15 C -0.004 4.004 16 C -0.521 4.521 17 H 0.069 0.931 18 C 0.066 3.934 19 N -0.907 5.907 20 Si 0.882 3.118 21 H -0.277 1.277 22 H -0.291 1.291 23 H -0.264 1.264 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.334 0.666 39 H 0.349 0.651 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.012 0.988 43 H 0.029 0.971 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.355 10.274 17.666 23.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.029 4.029 3 N -0.344 5.344 4 C -0.007 4.007 5 C -0.142 4.142 6 C -0.168 4.168 7 C -0.216 4.216 8 C -0.219 4.219 9 C 0.273 3.727 10 O -0.429 6.429 11 C -0.043 4.043 12 H 0.116 0.884 13 N -0.339 5.339 14 C -0.127 4.127 15 C -0.041 4.041 16 C -0.559 4.559 17 H 0.087 0.913 18 C -0.135 4.135 19 N -0.546 5.546 20 Si 0.710 3.290 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.189 1.189 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.114 0.886 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.146 0.854 39 H 0.163 0.837 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.031 0.969 43 H 0.048 0.952 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.140 10.106 17.023 22.716 hybrid contribution -0.625 0.581 0.294 0.903 sum -11.765 10.688 17.317 23.506 Atomic orbital electron populations 1.22291 0.95989 1.02568 1.02245 1.21817 0.94471 0.82114 1.04524 1.48118 1.66115 1.14375 1.05823 1.21427 0.97598 0.96669 0.84989 1.21599 0.98416 0.99336 0.94805 1.22235 1.01217 0.94620 0.98769 1.23031 1.02229 0.93544 1.02803 1.22954 0.94074 1.05115 0.99735 1.22594 0.76032 0.87076 0.86993 1.90637 1.46162 1.18436 1.87632 1.21912 1.02545 0.94739 0.85123 0.88367 1.59045 1.09078 1.21988 1.43836 1.21516 0.94320 0.96289 1.00603 1.19480 0.96838 0.94702 0.93091 1.21183 1.02518 1.20721 1.11473 0.91305 1.25017 0.96041 0.95070 0.97382 1.69926 1.30910 1.25352 1.28401 0.86737 0.84205 0.76930 0.81136 1.20290 1.21726 1.18877 0.91183 0.92422 0.92362 0.88550 0.90246 0.89995 0.90774 0.91327 0.91591 0.87732 0.88928 0.88785 0.88958 0.88911 0.85441 0.83672 0.92224 0.92035 0.96935 0.95234 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 10.10 37.16 0.38 -1.23 16 2 C 0.09 1.01 5.73 -4.04 -0.02 0.99 16 3 N -0.61 -7.73 2.47 -173.69 -0.43 -8.16 16 4 C 0.12 1.29 5.41 -4.04 -0.02 1.26 16 5 C -0.10 -1.02 5.82 -26.73 -0.16 -1.17 16 6 C -0.15 -1.29 5.73 -90.61 -0.52 -1.81 16 7 C -0.18 -1.54 10.18 -26.73 -0.27 -1.81 16 8 C -0.18 -1.41 10.25 -26.73 -0.27 -1.69 16 9 C 0.49 7.58 6.92 -10.98 -0.08 7.50 16 10 O -0.55 -10.03 15.83 5.56 0.09 -9.94 16 11 C 0.07 1.17 2.31 -68.87 -0.16 1.01 16 12 H 0.10 1.47 6.12 -51.93 -0.32 1.16 16 13 N -0.81 -13.00 8.44 -5.66 -0.05 -13.05 16 14 C -0.09 -1.73 4.45 -26.74 -0.12 -1.85 16 15 C 0.00 -0.09 3.93 -27.88 -0.11 -0.20 16 16 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 17 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.91 -28.12 13.96 55.43 0.77 -27.35 16 20 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.49 6.26 -51.93 -0.33 0.17 16 26 H 0.06 0.59 7.15 -51.93 -0.37 0.22 16 27 H 0.10 1.20 4.83 -51.93 -0.25 0.95 16 28 H 0.08 0.71 7.89 -51.93 -0.41 0.30 16 29 H 0.08 1.06 7.42 -51.93 -0.39 0.68 16 30 H 0.07 0.67 7.89 -51.93 -0.41 0.26 16 31 H 0.07 0.63 6.26 -51.93 -0.33 0.31 16 32 H 0.07 0.79 7.88 -51.93 -0.41 0.38 16 33 H 0.10 0.82 8.08 -51.93 -0.42 0.40 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.88 8.03 -51.93 -0.42 0.46 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.33 4.64 9.06 -39.29 -0.36 4.29 16 39 H 0.35 5.74 8.58 -39.29 -0.34 5.40 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.14 6.43 -51.93 -0.33 0.81 16 42 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 43 H 0.03 0.72 7.18 -51.93 -0.37 0.34 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 348.15 15.07 5.25 5.25 Total: -1.00 -32.35 348.15 -8.34 -40.69 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.51 Total: 7.57 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -1.78 Total: -12.31 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.30 Total: -48.56 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.35 -8.34 -40.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691579528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.873 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds