Wall clock time and date at job start Mon Mar 30 2020 05:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46983 * 2 1 4 4 C 1.34784 * 119.99885 * 84.36831 * 3 2 1 5 5 O 1.21274 * 119.99855 * 4.84053 * 4 3 2 6 6 C 1.50702 * 120.00037 * 184.84088 * 4 3 2 7 7 H 1.09007 * 109.47145 * 33.71404 * 6 4 3 8 8 N 1.46895 * 109.46852 * 153.71233 * 6 4 3 9 9 C 1.52992 * 109.47218 * 273.71767 * 6 4 3 10 10 C 1.52998 * 109.47218 * 176.42098 * 9 6 4 11 11 C 1.50701 * 109.46954 * 179.97438 * 10 9 6 12 12 H 1.07998 * 120.00361 * 359.72885 * 11 10 9 13 13 C 1.37880 * 119.99860 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00114 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00087 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47404 * 90.00337 * 15 13 11 17 17 H 1.48507 * 109.46986 * 210.00491 * 15 13 11 18 18 H 1.48501 * 109.47055 * 330.00158 * 15 13 11 19 19 C 1.46496 * 120.00391 * 264.37303 * 3 2 1 20 20 H 1.09004 * 109.47496 * 179.97438 * 19 3 2 21 21 C 1.53005 * 109.47167 * 59.99677 * 19 3 2 22 22 C 1.53001 * 109.46873 * 299.99917 * 19 3 2 23 23 C 1.53002 * 117.49981 * 248.62157 * 22 19 3 24 24 C 1.52998 * 59.99940 * 252.51058 * 23 22 19 25 25 H 1.08995 * 109.47439 * 305.21080 * 1 2 3 26 26 H 1.08998 * 109.47420 * 65.21623 * 1 2 3 27 27 H 1.09004 * 109.47096 * 185.21202 * 1 2 3 28 28 H 1.09001 * 109.47271 * 240.00471 * 2 1 3 29 29 H 1.09000 * 109.47167 * 120.00122 * 2 1 3 30 30 H 1.00899 * 110.99952 * 60.00634 * 8 6 4 31 31 H 1.00908 * 110.99944 * 183.95479 * 8 6 4 32 32 H 1.08999 * 109.47438 * 56.41882 * 9 6 4 33 33 H 1.09007 * 109.47293 * 296.42427 * 9 6 4 34 34 H 1.08997 * 109.47050 * 60.00350 * 10 9 6 35 35 H 1.08996 * 109.47379 * 299.99876 * 10 9 6 36 36 H 0.97003 * 120.00284 * 179.97438 * 14 13 11 37 37 H 1.09000 * 109.46820 * 300.00037 * 21 19 3 38 38 H 1.08998 * 109.47270 * 60.00407 * 21 19 3 39 39 H 1.08997 * 109.46886 * 180.02562 * 21 19 3 40 40 H 1.08998 * 115.55181 * 34.32992 * 22 19 3 41 41 H 1.09003 * 117.49500 * 359.97438 * 23 22 19 42 42 H 1.08991 * 117.50106 * 145.02185 * 23 22 19 43 43 H 1.08999 * 117.49924 * 252.50879 * 24 23 22 44 44 H 1.09001 * 117.51947 * 107.48139 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1349 2.0548 1.1616 5 8 1.9200 1.4910 2.2136 6 6 2.5323 3.5084 1.1532 7 1 2.1234 3.9917 0.2658 8 7 2.0056 4.1670 2.3560 9 6 4.0581 3.6199 1.1373 10 6 4.4608 5.0927 1.0386 11 6 5.9638 5.2025 1.0236 12 1 6.5710 4.3114 1.0832 13 6 6.5637 6.4410 0.9388 14 7 5.8243 7.5266 0.8715 15 14 8.4266 6.5772 0.9194 16 1 8.9125 6.5214 -0.4827 17 1 8.8351 7.8659 1.5340 18 1 9.0131 5.4525 1.6916 19 6 2.3797 2.0305 -1.2625 20 1 2.7181 3.0475 -1.0643 21 6 1.1586 2.0701 -2.1835 22 6 3.5029 1.2414 -1.9384 23 6 4.8808 1.9016 -2.0189 24 6 4.0245 1.7624 -3.2791 25 1 -0.3634 0.5925 0.8396 26 1 -0.3634 0.4308 -0.9330 27 1 -0.3633 -1.0234 0.0934 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.3702 3.7368 3.1927 31 1 2.2034 5.1564 2.3425 32 1 4.4532 3.0769 0.2787 33 1 4.4632 3.1931 2.0548 34 1 4.0659 5.6356 1.8973 35 1 4.0558 5.5195 0.1212 36 1 6.2463 8.3980 0.8122 37 1 0.8199 1.0532 -2.3818 38 1 0.3584 2.6322 -1.7021 39 1 1.4277 2.5527 -3.1231 40 1 3.4696 0.1611 -1.7968 41 1 4.9869 2.8984 -1.5906 42 1 5.7543 1.2559 -1.9301 43 1 4.3346 1.0249 -4.0194 44 1 3.5672 2.6670 -3.6798 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691606752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:40 Heat of formation + Delta-G solvation = -27.186896 kcal Electronic energy + Delta-G solvation = -21912.498825 eV Core-core repulsion = 18865.023417 eV Total energy + Delta-G solvation = -3047.475408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.22153 -37.78817 -35.79756 -35.05123 -32.86960 -31.39688 -29.98720 -29.76708 -26.58977 -24.55839 -23.96339 -22.57637 -22.15269 -20.62992 -20.11913 -18.67353 -17.59022 -16.26978 -16.21447 -15.24415 -15.03217 -14.61443 -14.47512 -14.18324 -14.01522 -13.49286 -13.35810 -13.02458 -12.81748 -12.68287 -12.35815 -12.32427 -12.10483 -11.70778 -11.64711 -11.33451 -11.07228 -10.95146 -10.88998 -10.75255 -10.67755 -10.34155 -10.03681 -9.93242 -9.80647 -9.24833 -9.13230 -8.54567 -8.43852 -8.15170 -6.08520 -4.11436 2.96565 3.07181 3.26718 3.33856 3.37201 3.87310 4.39327 4.57315 4.69408 4.92320 5.03330 5.08821 5.15661 5.23352 5.27905 5.30071 5.33544 5.38197 5.48710 5.57211 5.62786 5.69327 5.74182 5.78716 5.83534 5.97428 6.02155 6.10829 6.19199 6.23913 6.25975 6.40281 6.57139 6.72771 6.89729 7.44853 7.52489 7.60870 7.68115 7.88760 7.92949 8.31534 8.50048 8.94559 9.53592 11.02377 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019426 B = 0.005647 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.016578 B = 4957.409462 C = 5807.999421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 N -0.607 5.607 4 C 0.530 3.470 5 O -0.539 6.539 6 C 0.073 3.927 7 H 0.093 0.907 8 N -0.832 5.832 9 C -0.142 4.142 10 C 0.026 3.974 11 C -0.522 4.522 12 H 0.055 0.945 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.890 3.110 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.159 3.841 20 H 0.103 0.897 21 C -0.160 4.160 22 C -0.169 4.169 23 C -0.174 4.174 24 C -0.173 4.173 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.346 0.654 31 H 0.354 0.646 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.017 0.983 35 H 0.017 0.983 36 H 0.261 0.739 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.057 -12.234 -7.904 16.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.010 4.010 3 N -0.341 5.341 4 C 0.319 3.681 5 O -0.415 6.415 6 C -0.042 4.042 7 H 0.111 0.889 8 N -0.364 5.364 9 C -0.182 4.182 10 C -0.012 4.012 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.718 3.282 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C 0.055 3.945 20 H 0.121 0.879 21 C -0.218 4.218 22 C -0.188 4.188 23 C -0.211 4.211 24 C -0.211 4.211 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.159 0.841 31 H 0.169 0.831 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.122 0.878 41 H 0.129 0.871 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.894 -12.579 -7.580 17.170 hybrid contribution 2.129 0.361 0.032 2.159 sum -6.765 -12.218 -7.549 15.875 Atomic orbital electron populations 1.22225 0.96146 1.01828 1.02485 1.21281 0.94165 0.83065 1.02505 1.47982 1.65889 1.13828 1.06399 1.20847 0.75315 0.89158 0.82814 1.90613 1.50037 1.70034 1.30785 1.21535 0.96267 0.90585 0.95850 0.88884 1.58786 1.65679 1.08262 1.03669 1.22474 0.91493 1.02343 1.01874 1.19089 0.96521 0.88350 0.97193 1.21162 0.91662 0.92417 1.50736 0.92722 1.24992 0.98135 0.95893 0.95151 1.69947 1.35133 0.97844 1.50278 0.86616 0.85818 0.77512 0.78221 1.20600 1.21177 1.19898 1.20834 0.93385 0.97016 0.83246 0.87944 1.22204 0.97643 1.02400 0.99571 1.22594 0.95859 0.99577 1.00765 1.23187 0.93565 1.03349 1.01020 1.22914 1.04320 1.03074 0.90770 0.92124 0.92351 0.92155 0.90779 0.90496 0.84122 0.83111 0.91935 0.92702 0.96477 0.96480 0.92907 0.92079 0.92090 0.91335 0.87826 0.87116 0.88950 0.89016 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 9.96 37.16 0.37 -1.46 16 2 C 0.11 1.35 5.29 -4.04 -0.02 1.33 16 3 N -0.61 -8.46 2.39 -166.10 -0.40 -8.85 16 4 C 0.53 9.23 6.83 -10.98 -0.07 9.15 16 5 O -0.54 -10.91 15.95 5.56 0.09 -10.82 16 6 C 0.07 1.28 2.36 -68.87 -0.16 1.12 16 7 H 0.09 1.57 6.49 -51.92 -0.34 1.23 16 8 N -0.83 -14.80 8.98 -5.66 -0.05 -14.85 16 9 C -0.14 -2.83 4.54 -26.74 -0.12 -2.95 16 10 C 0.03 0.61 4.71 -27.88 -0.13 0.48 16 11 C -0.52 -14.10 9.11 -34.44 -0.31 -14.41 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -25.78 13.29 55.43 0.74 -25.05 16 15 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 19 C 0.16 1.95 2.36 -67.93 -0.16 1.79 16 20 H 0.10 1.43 4.64 -51.93 -0.24 1.19 16 21 C -0.16 -1.60 8.19 37.16 0.30 -1.30 16 22 C -0.17 -1.93 5.12 -90.62 -0.46 -2.39 16 23 C -0.17 -2.24 9.60 -26.73 -0.26 -2.49 16 24 C -0.17 -1.81 9.73 -26.73 -0.26 -2.07 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.57 6.16 -51.93 -0.32 0.25 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.72 6.51 -51.93 -0.34 0.39 16 29 H 0.08 1.03 7.53 -51.93 -0.39 0.64 16 30 H 0.35 6.27 8.55 -39.29 -0.34 5.93 16 31 H 0.35 6.26 7.50 -39.29 -0.29 5.97 16 32 H 0.06 1.19 5.30 -51.93 -0.28 0.91 16 33 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.02 0.43 6.83 -51.93 -0.35 0.08 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.06 0.55 6.52 -51.93 -0.34 0.21 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.61 7.29 -51.93 -0.38 0.23 16 40 H 0.10 1.12 6.67 -51.93 -0.35 0.77 16 41 H 0.11 1.69 6.66 -51.93 -0.35 1.35 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.10 0.97 7.61 -51.93 -0.39 0.58 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -30.21 342.02 -8.07 -38.28 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -7.19 Total: 11.68 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -1.39 Total: -11.65 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.29 Total: -48.75 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.21 -8.07 -38.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691606752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.095 kcal (2) G-P(sol) polarization free energy of solvation -30.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds