Wall clock time and date at job start Mon Mar 30 2020 06:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47656 * 111.00120 * 2 1 4 4 C 1.52586 * 111.70467 * 178.51502 * 3 2 1 5 5 C 1.53857 * 111.26611 * 53.59936 * 4 3 2 6 6 C 1.51808 * 106.93765 * 304.67530 * 5 4 3 7 7 H 1.08997 * 110.00067 * 303.05466 * 6 5 4 8 8 C 1.45436 * 110.99737 * 238.97361 * 2 1 3 9 9 H 1.08997 * 109.97896 * 68.37483 * 8 2 1 10 10 C 1.52863 * 116.69225 * 302.21510 * 8 2 1 11 11 C 1.54995 * 103.97988 * 216.11287 * 10 8 2 12 12 N 1.46728 * 116.52477 * 175.90930 * 6 5 4 13 13 C 1.46902 * 110.99796 * 81.12424 * 12 6 5 14 14 C 1.52999 * 109.47190 * 181.23768 * 13 12 6 15 15 O 1.42892 * 109.47286 * 64.89175 * 14 13 12 16 16 C 1.42895 * 114.00364 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47557 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99718 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00265 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99733 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00158 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47048 * 90.00171 * 21 19 17 23 23 H 1.48501 * 109.47260 * 209.99839 * 21 19 17 24 24 H 1.48498 * 109.46677 * 329.99888 * 21 19 17 25 25 H 1.08998 * 109.47025 * 56.04602 * 1 2 3 26 26 H 1.08992 * 109.47123 * 176.04480 * 1 2 3 27 27 H 1.09002 * 109.46979 * 296.04772 * 1 2 3 28 28 H 1.09007 * 109.03334 * 57.93945 * 3 2 1 29 29 H 1.09001 * 108.97817 * 299.04917 * 3 2 1 30 30 H 1.08998 * 109.12276 * 293.13659 * 4 3 2 31 31 H 1.09004 * 109.12105 * 174.06233 * 4 3 2 32 32 H 1.09004 * 109.96082 * 64.03420 * 5 4 3 33 33 H 1.08994 * 109.96077 * 185.31725 * 5 4 3 34 34 H 1.08998 * 110.52383 * 334.73422 * 10 8 2 35 35 H 1.08997 * 110.52141 * 97.34803 * 10 8 2 36 36 H 1.08998 * 109.98522 * 121.66082 * 11 10 8 37 37 H 1.08999 * 109.98286 * 242.97324 * 11 10 8 38 38 H 1.09002 * 109.47191 * 301.23890 * 13 12 6 39 39 H 1.09003 * 109.47244 * 61.23758 * 13 12 6 40 40 H 1.09001 * 109.46870 * 184.89719 * 14 13 12 41 41 H 1.09001 * 109.46808 * 304.89094 * 14 13 12 42 42 H 1.08994 * 109.47309 * 300.00195 * 16 15 14 43 43 H 1.09005 * 109.47013 * 59.99852 * 16 15 14 44 44 H 0.96996 * 119.99824 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9983 1.3785 0.0000 4 6 3.5236 1.3974 0.0367 5 6 4.1197 0.5428 -1.0953 6 6 3.5239 -0.8470 -0.9610 7 1 3.7332 -1.2481 0.0307 8 6 1.9902 -0.6998 -1.1635 9 1 1.7712 -0.1327 -2.0682 10 6 1.5565 -2.1549 -1.3409 11 6 2.8111 -2.8507 -1.9276 12 7 3.8828 -1.8172 -2.0016 13 6 5.2022 -2.4073 -1.7385 14 6 5.5544 -3.3885 -2.8584 15 8 5.6951 -2.6762 -4.0891 16 6 6.0262 -3.5044 -5.2055 17 6 6.1485 -2.6536 -6.4434 18 1 5.9897 -1.5871 -6.3835 19 6 6.4632 -3.2369 -7.6524 20 7 6.6561 -4.5358 -7.7255 21 14 6.6155 -2.1823 -9.1867 22 1 8.0179 -1.7154 -9.3292 23 1 6.2372 -2.9841 -10.3781 24 1 5.7123 -1.0091 -9.0725 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0251 -0.0709 27 1 -0.3633 0.4513 0.9233 28 1 1.6150 1.9064 0.8733 29 1 1.6580 1.8888 -0.9011 30 1 3.8625 1.0060 0.9959 31 1 3.8706 2.4251 -0.0710 32 1 3.8545 0.9694 -2.0627 33 1 5.2038 0.4943 -0.9936 34 1 1.2903 -2.5942 -0.3795 35 1 0.7194 -2.2221 -2.0357 36 1 3.1241 -3.6661 -1.2755 37 1 2.5929 -3.2332 -2.9246 38 1 5.9521 -1.6173 -1.6984 39 1 5.1802 -2.9361 -0.7857 40 1 6.4920 -3.8906 -2.6198 41 1 4.7604 -4.1289 -2.9558 42 1 6.9737 -4.0084 -5.0156 43 1 5.2423 -4.2475 -5.3518 44 1 6.8778 -4.9461 -8.5759 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720392705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:54 Heat of formation + Delta-G solvation = -37.555841 kcal Electronic energy + Delta-G solvation = -21355.800756 eV Core-core repulsion = 18307.875716 eV Total energy + Delta-G solvation = -3047.925040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.36867 -37.28693 -36.01122 -33.75160 -32.75338 -31.58593 -28.92460 -27.96249 -26.63296 -26.41201 -23.17691 -22.42402 -22.11638 -21.63390 -19.93092 -19.63766 -16.38907 -16.22972 -15.83739 -15.38798 -15.17637 -15.01601 -14.59137 -14.33274 -14.22335 -13.92949 -13.43639 -13.25902 -13.02887 -12.72778 -12.47379 -12.12700 -11.82509 -11.63691 -11.57992 -11.26928 -11.10328 -10.89780 -10.85047 -10.76747 -10.72738 -10.61775 -10.32068 -10.11718 -9.89066 -9.02252 -8.73547 -8.56283 -8.15311 -8.06067 -6.04970 -4.05631 3.34196 3.38849 3.45058 3.61738 4.15146 4.40583 4.46448 4.66039 4.86469 4.90884 4.96892 5.10325 5.13153 5.19955 5.27814 5.30026 5.31512 5.44928 5.49658 5.54965 5.63743 5.66733 5.69758 5.74573 5.81923 5.88404 5.94227 5.96198 6.03497 6.11494 6.17012 6.22356 6.36060 6.39149 6.80898 6.88528 7.16203 7.18733 7.33444 7.50849 7.87202 8.23878 8.69489 9.09570 9.59049 11.06817 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025684 B = 0.003872 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.912370 B = 7228.897867 C = 7425.256751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.525 5.525 3 C 0.052 3.948 4 C -0.115 4.115 5 C -0.106 4.106 6 C 0.069 3.931 7 H 0.055 0.945 8 C 0.071 3.929 9 H 0.056 0.944 10 C -0.120 4.120 11 C 0.038 3.962 12 N -0.489 5.489 13 C 0.053 3.947 14 C 0.068 3.932 15 O -0.379 6.379 16 C 0.194 3.806 17 C -0.509 4.509 18 H 0.066 0.934 19 C 0.055 3.945 20 N -0.901 5.901 21 Si 0.907 3.093 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 H 0.026 0.974 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.038 0.962 41 H 0.035 0.965 42 H 0.002 0.998 43 H 0.003 0.997 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.383 7.974 17.877 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.249 5.249 3 C -0.076 4.076 4 C -0.153 4.153 5 C -0.144 4.144 6 C -0.040 4.040 7 H 0.073 0.927 8 C -0.038 4.038 9 H 0.074 0.926 10 C -0.158 4.158 11 C -0.090 4.090 12 N -0.213 5.213 13 C -0.075 4.075 14 C -0.010 4.010 15 O -0.299 6.299 16 C 0.120 3.880 17 C -0.548 4.548 18 H 0.085 0.915 19 C -0.146 4.146 20 N -0.541 5.541 21 Si 0.734 3.266 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.196 1.196 25 H 0.044 0.956 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.019 0.981 43 H 0.020 0.980 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.167 8.024 17.640 21.884 hybrid contribution -0.145 0.025 -0.793 0.807 sum -10.312 8.049 16.847 21.329 Atomic orbital electron populations 1.22390 0.87621 1.02097 1.00645 1.62510 1.07700 1.14333 1.40384 1.22168 0.95773 0.88928 1.00686 1.21585 0.94091 1.00154 0.99483 1.21409 1.00198 0.93880 0.98911 1.22331 0.93900 0.93818 0.93937 0.92730 1.22213 0.95021 0.94943 0.91622 0.92623 1.22221 0.98063 0.94489 1.01058 1.23237 0.90641 0.93802 1.01334 1.64730 1.01250 1.11628 1.43734 1.22318 0.91525 0.98134 0.95542 1.22211 0.98235 0.93538 0.87045 1.87946 1.91104 1.35277 1.15562 1.20166 0.93932 0.90779 0.83156 1.21073 1.47047 0.95051 0.91580 0.91536 1.24945 0.95382 0.95162 0.99089 1.69970 1.48383 1.09634 1.26067 0.86354 0.78471 0.80093 0.81679 1.20522 1.21153 1.19625 0.95569 0.91176 0.91526 0.90857 0.94762 0.91508 0.91153 0.90953 0.91428 0.90893 0.91106 0.93600 0.89727 0.90051 0.94236 0.94395 0.94698 0.98065 0.97967 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.47 60.07 0.57 0.75 16 2 N -0.52 -5.65 4.98 -234.18 -1.17 -6.82 16 3 C 0.05 0.50 5.36 -3.62 -0.02 0.48 16 4 C -0.11 -1.11 5.99 -26.50 -0.16 -1.27 16 5 C -0.11 -1.30 5.95 -26.89 -0.16 -1.46 16 6 C 0.07 0.93 1.82 -67.14 -0.12 0.80 16 7 H 0.05 0.74 8.05 -51.93 -0.42 0.32 16 8 C 0.07 0.88 2.08 -67.30 -0.14 0.75 16 9 H 0.06 0.78 7.98 -51.93 -0.41 0.37 16 10 C -0.12 -1.41 5.66 -25.75 -0.15 -1.56 16 11 C 0.04 0.53 5.56 -1.56 -0.01 0.53 16 12 N -0.49 -7.78 5.17 -222.82 -1.15 -8.93 16 13 C 0.05 0.84 5.12 -3.82 -0.02 0.82 16 14 C 0.07 1.31 6.03 37.16 0.22 1.53 16 15 O -0.38 -9.52 10.27 -35.23 -0.36 -9.88 16 16 C 0.19 5.49 5.69 36.01 0.20 5.70 16 17 C -0.51 -15.41 9.43 -34.44 -0.32 -15.74 16 18 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 21 Si 0.91 22.30 29.54 -169.99 -5.02 17.28 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.07 0.59 7.15 -51.93 -0.37 0.22 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.34 8.09 -51.93 -0.42 -0.08 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 33 H 0.07 0.83 7.95 -51.93 -0.41 0.42 16 34 H 0.07 0.79 8.02 -51.93 -0.42 0.37 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.60 7.67 -51.93 -0.40 0.20 16 37 H 0.08 1.32 8.12 -51.93 -0.42 0.90 16 38 H 0.08 1.31 7.94 -51.93 -0.41 0.89 16 39 H 0.04 0.54 7.95 -51.93 -0.41 0.12 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.03 0.66 7.21 -51.93 -0.37 0.28 16 42 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 43 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 341.81 15.07 5.15 5.15 Total: -1.00 -32.09 341.81 -10.25 -42.34 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -8.24 Total: -5.26 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -0.20 Total: -7.15 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: -1.58 Total: -42.49 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.36 Total: -9.88 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.09 -10.25 -42.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720392705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.785 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds