Wall clock time and date at job start Mon Mar 30 2020 06:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47656 * 111.00120 * 2 1 4 4 C 1.52586 * 111.70467 * 178.51502 * 3 2 1 5 5 C 1.53857 * 111.26611 * 53.59936 * 4 3 2 6 6 C 1.51808 * 106.93765 * 304.67530 * 5 4 3 7 7 H 1.08997 * 110.00067 * 303.05466 * 6 5 4 8 8 C 1.45436 * 110.99737 * 238.97361 * 2 1 3 9 9 H 1.08997 * 109.97896 * 68.37483 * 8 2 1 10 10 C 1.52863 * 116.69225 * 302.21510 * 8 2 1 11 11 C 1.54995 * 103.97988 * 216.11287 * 10 8 2 12 12 N 1.46728 * 116.52477 * 175.90930 * 6 5 4 13 13 C 1.46902 * 110.99796 * 81.12424 * 12 6 5 14 14 C 1.52999 * 109.47190 * 181.23768 * 13 12 6 15 15 O 1.42892 * 109.47286 * 64.89175 * 14 13 12 16 16 C 1.42895 * 114.00364 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47557 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99718 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00265 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99733 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00158 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47048 * 90.00171 * 21 19 17 23 23 H 1.48501 * 109.47260 * 209.99839 * 21 19 17 24 24 H 1.48498 * 109.46677 * 329.99888 * 21 19 17 25 25 H 1.08998 * 109.47025 * 56.04602 * 1 2 3 26 26 H 1.08992 * 109.47123 * 176.04480 * 1 2 3 27 27 H 1.09002 * 109.46979 * 296.04772 * 1 2 3 28 28 H 1.09007 * 109.03334 * 57.93945 * 3 2 1 29 29 H 1.09001 * 108.97817 * 299.04917 * 3 2 1 30 30 H 1.08998 * 109.12276 * 293.13659 * 4 3 2 31 31 H 1.09004 * 109.12105 * 174.06233 * 4 3 2 32 32 H 1.09004 * 109.96082 * 64.03420 * 5 4 3 33 33 H 1.08994 * 109.96077 * 185.31725 * 5 4 3 34 34 H 1.08998 * 110.52383 * 334.73422 * 10 8 2 35 35 H 1.08997 * 110.52141 * 97.34803 * 10 8 2 36 36 H 1.08998 * 109.98522 * 121.66082 * 11 10 8 37 37 H 1.08999 * 109.98286 * 242.97324 * 11 10 8 38 38 H 1.09002 * 109.47191 * 301.23890 * 13 12 6 39 39 H 1.09003 * 109.47244 * 61.23758 * 13 12 6 40 40 H 1.09001 * 109.46870 * 184.89719 * 14 13 12 41 41 H 1.09001 * 109.46808 * 304.89094 * 14 13 12 42 42 H 1.08994 * 109.47309 * 300.00195 * 16 15 14 43 43 H 1.09005 * 109.47013 * 59.99852 * 16 15 14 44 44 H 0.96996 * 119.99824 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9983 1.3785 0.0000 4 6 3.5236 1.3974 0.0367 5 6 4.1197 0.5428 -1.0953 6 6 3.5239 -0.8470 -0.9610 7 1 3.7332 -1.2481 0.0307 8 6 1.9902 -0.6998 -1.1635 9 1 1.7712 -0.1327 -2.0682 10 6 1.5565 -2.1549 -1.3409 11 6 2.8111 -2.8507 -1.9276 12 7 3.8828 -1.8172 -2.0016 13 6 5.2022 -2.4073 -1.7385 14 6 5.5544 -3.3885 -2.8584 15 8 5.6951 -2.6762 -4.0891 16 6 6.0262 -3.5044 -5.2055 17 6 6.1485 -2.6536 -6.4434 18 1 5.9897 -1.5871 -6.3835 19 6 6.4632 -3.2369 -7.6524 20 7 6.6561 -4.5358 -7.7255 21 14 6.6155 -2.1823 -9.1867 22 1 8.0179 -1.7154 -9.3292 23 1 6.2372 -2.9841 -10.3781 24 1 5.7123 -1.0091 -9.0725 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0251 -0.0709 27 1 -0.3633 0.4513 0.9233 28 1 1.6150 1.9064 0.8733 29 1 1.6580 1.8888 -0.9011 30 1 3.8625 1.0060 0.9959 31 1 3.8706 2.4251 -0.0710 32 1 3.8545 0.9694 -2.0627 33 1 5.2038 0.4943 -0.9936 34 1 1.2903 -2.5942 -0.3795 35 1 0.7194 -2.2221 -2.0357 36 1 3.1241 -3.6661 -1.2755 37 1 2.5929 -3.2332 -2.9246 38 1 5.9521 -1.6173 -1.6984 39 1 5.1802 -2.9361 -0.7857 40 1 6.4920 -3.8906 -2.6198 41 1 4.7604 -4.1289 -2.9558 42 1 6.9737 -4.0084 -5.0156 43 1 5.2423 -4.2475 -5.3518 44 1 6.8778 -4.9461 -8.5759 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720392705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:53 Heat of formation + Delta-G solvation = -60.784698 kcal Electronic energy + Delta-G solvation = -21356.808035 eV Core-core repulsion = 18307.875716 eV Total energy + Delta-G solvation = -3048.932318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.37025 -38.78663 -37.44520 -34.94915 -34.63293 -32.89893 -29.94890 -29.67324 -28.19616 -27.42388 -24.50807 -24.20541 -23.45565 -22.59800 -20.99003 -20.70130 -18.60707 -17.48345 -17.40459 -16.63294 -16.47129 -16.17852 -16.10380 -15.61326 -15.50037 -15.13197 -14.74604 -14.60113 -14.19722 -13.93216 -13.67758 -13.34488 -13.18088 -13.02103 -12.84542 -12.69941 -12.57545 -12.41541 -12.28971 -12.12610 -11.81903 -11.79340 -11.70375 -11.52077 -11.25545 -11.05115 -10.85029 -10.18614 -9.42625 -9.29304 -8.31880 -6.43869 1.39002 1.42235 1.54447 2.35080 2.69171 3.01632 3.13156 3.27486 3.43846 3.70176 4.00777 4.03068 4.14709 4.20455 4.21433 4.26790 4.34779 4.38910 4.47750 4.53882 4.56806 4.60621 4.65535 4.76252 4.82629 4.83953 4.91239 4.92865 4.96962 5.00876 5.04344 5.09435 5.15988 5.18740 5.21425 5.39520 5.55483 5.85366 5.97380 6.01843 6.17166 6.19970 6.56993 6.86337 7.28410 8.80663 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025684 B = 0.003872 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.912370 B = 7228.897867 C = 7425.256751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.528 5.528 3 C 0.050 3.950 4 C -0.108 4.108 5 C -0.107 4.107 6 C 0.071 3.929 7 H 0.060 0.940 8 C 0.078 3.922 9 H 0.032 0.968 10 C -0.110 4.110 11 C 0.036 3.964 12 N -0.521 5.521 13 C 0.063 3.937 14 C 0.059 3.941 15 O -0.395 6.395 16 C 0.210 3.790 17 C -0.546 4.546 18 H 0.059 0.941 19 C 0.007 3.993 20 N -0.931 5.931 21 Si 0.983 3.017 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.266 1.266 25 H 0.023 0.977 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.037 0.963 42 H -0.016 1.016 43 H -0.019 1.019 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.998 9.068 18.808 23.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.252 5.252 3 C -0.078 4.078 4 C -0.146 4.146 5 C -0.145 4.145 6 C -0.038 4.038 7 H 0.078 0.922 8 C -0.032 4.032 9 H 0.050 0.950 10 C -0.149 4.149 11 C -0.092 4.092 12 N -0.245 5.245 13 C -0.065 4.065 14 C -0.018 4.018 15 O -0.315 6.315 16 C 0.135 3.865 17 C -0.584 4.584 18 H 0.077 0.923 19 C -0.192 4.192 20 N -0.571 5.571 21 Si 0.806 3.194 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.191 1.191 25 H 0.042 0.958 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.002 0.998 43 H -0.001 1.001 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.791 9.117 18.601 23.357 hybrid contribution 0.034 -0.357 -1.017 1.078 sum -10.757 8.760 17.584 22.397 Atomic orbital electron populations 1.22460 0.86352 1.02570 1.01441 1.62553 1.08899 1.14822 1.38966 1.22254 0.95664 0.88498 1.01353 1.21552 0.94111 1.00481 0.98429 1.21427 1.00161 0.93914 0.99033 1.22349 0.94666 0.93517 0.93227 0.92212 1.22073 0.94554 0.95099 0.91471 0.94979 1.22157 0.97007 0.93932 1.01765 1.23222 0.91410 0.94136 1.00436 1.64658 1.01530 1.12792 1.45548 1.22209 0.91750 0.97487 0.95091 1.22548 0.98898 0.94617 0.85725 1.87903 1.91044 1.35837 1.16725 1.19781 0.92200 0.90301 0.84251 1.21376 1.48846 0.94989 0.93164 0.92311 1.25957 0.94051 0.96633 1.02527 1.70073 1.48108 1.11395 1.27498 0.85188 0.79062 0.78226 0.76962 1.19130 1.19762 1.19073 0.95816 0.90788 0.89789 0.88732 0.95406 0.90791 0.89590 0.93068 0.91793 0.89255 0.90599 0.92370 0.92208 0.90407 0.91118 0.93444 0.94486 0.99835 1.00082 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.47 127.69 1.21 1.51 16 2 N -0.53 -10.32 4.98 -894.82 -4.46 -14.78 16 3 C 0.05 0.86 5.36 86.02 0.46 1.32 16 4 C -0.11 -1.89 5.99 30.75 0.18 -1.71 16 5 C -0.11 -2.60 5.95 30.49 0.18 -2.41 16 6 C 0.07 1.84 1.82 45.38 0.08 1.93 16 7 H 0.06 1.50 8.05 -2.39 -0.02 1.48 16 8 C 0.08 1.87 2.08 45.97 0.10 1.96 16 9 H 0.03 0.92 7.98 -2.39 -0.02 0.90 16 10 C -0.11 -2.49 5.66 31.23 0.18 -2.31 16 11 C 0.04 1.01 5.56 86.56 0.48 1.49 16 12 N -0.52 -16.56 5.17 -858.87 -4.44 -21.00 16 13 C 0.06 1.96 5.12 86.30 0.44 2.41 16 14 C 0.06 2.33 6.03 71.98 0.43 2.76 16 15 O -0.40 -20.49 10.27 -148.98 -1.53 -22.02 16 16 C 0.21 12.34 5.69 71.24 0.41 12.74 16 17 C -0.55 -33.87 9.43 25.60 0.24 -33.62 16 18 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 19 C 0.01 0.39 5.46 84.65 0.46 0.85 16 20 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 21 Si 0.98 45.62 29.54 68.60 2.03 47.64 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.07 1.09 7.15 -2.39 -0.02 1.07 16 27 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.03 0.52 8.09 -2.39 -0.02 0.50 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.05 1.43 8.10 -2.39 -0.02 1.42 16 33 H 0.06 1.56 7.95 -2.39 -0.02 1.54 16 34 H 0.09 1.74 8.02 -2.39 -0.02 1.72 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.06 1.46 7.67 -2.39 -0.02 1.44 16 37 H 0.06 1.94 8.12 -2.39 -0.02 1.92 16 38 H 0.08 2.48 7.94 -2.39 -0.02 2.46 16 39 H 0.07 1.78 7.95 -2.39 -0.02 1.76 16 40 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.04 1.43 7.21 -2.39 -0.02 1.41 16 42 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 43 H -0.02 -1.14 8.14 -2.38 -0.02 -1.16 16 44 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -69.59 341.81 -2.33 -71.92 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.93 Total: 8.33 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: 4.86 Total: -13.08 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -8.61 Total: -92.80 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -1.53 Total: -22.02 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -69.59 -2.33 -71.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720392705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.139 kcal (2) G-P(sol) polarization free energy of solvation -69.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds