Wall clock time and date at job start Mon Mar 30 2020 05:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47272 * 2 1 4 4 C 1.46901 * 110.99981 * 287.63943 * 3 2 1 5 5 C 1.50696 * 109.46929 * 300.77421 * 4 3 2 6 6 O 1.21274 * 120.00472 * 356.48615 * 5 4 3 7 7 N 1.34781 * 119.99534 * 176.48599 * 5 4 3 8 8 C 1.46500 * 119.99751 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.46952 * 179.97438 * 8 7 5 10 10 H 1.07994 * 120.00237 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99442 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00693 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99633 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46914 * 59.99952 * 13 11 9 15 15 H 1.48495 * 109.47165 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47109 * 299.99806 * 13 11 9 17 17 C 1.46901 * 111.00083 * 163.68334 * 3 2 1 18 18 C 1.53782 * 113.61504 * 204.82069 * 17 3 2 19 19 C 1.54049 * 86.98638 * 140.02003 * 18 17 3 20 20 C 1.53002 * 113.61730 * 220.02103 * 19 18 17 21 21 C 1.52998 * 113.69056 * 89.12486 * 19 18 17 22 22 C 1.53778 * 113.61256 * 302.42560 * 17 3 2 23 23 H 1.08999 * 109.47532 * 60.19295 * 1 2 3 24 24 H 1.08997 * 109.47329 * 180.19933 * 1 2 3 25 25 H 1.09003 * 109.47108 * 300.19374 * 1 2 3 26 26 H 1.08998 * 109.47247 * 240.00177 * 2 1 3 27 27 H 1.08999 * 109.47706 * 120.00314 * 2 1 3 28 28 H 1.08995 * 109.47068 * 60.78246 * 4 3 2 29 29 H 1.08997 * 109.46919 * 180.77605 * 4 3 2 30 30 H 0.96999 * 120.00326 * 359.97438 * 7 5 4 31 31 H 1.09004 * 109.46688 * 299.99623 * 8 7 5 32 32 H 1.09000 * 109.47789 * 59.99353 * 8 7 5 33 33 H 0.97001 * 120.00096 * 180.02562 * 12 11 9 34 34 H 1.08999 * 112.84631 * 73.62051 * 17 3 2 35 35 H 1.09001 * 113.61455 * 254.61683 * 18 17 3 36 36 H 1.09001 * 113.61171 * 25.51461 * 18 17 3 37 37 H 1.08997 * 109.46791 * 157.49706 * 20 19 18 38 38 H 1.08999 * 109.47166 * 277.49086 * 20 19 18 39 39 H 1.09002 * 109.47249 * 37.49852 * 20 19 18 40 40 H 1.09002 * 109.46797 * 322.47476 * 21 19 18 41 41 H 1.09008 * 109.46841 * 82.46769 * 21 19 18 42 42 H 1.08996 * 109.47098 * 202.47142 * 21 19 18 43 43 H 1.08998 * 113.61906 * 334.48641 * 22 17 3 44 44 H 1.09005 * 113.61335 * 105.38961 * 22 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8034 2.0199 -1.3070 5 6 2.5255 1.2356 -2.3720 6 8 3.2099 0.2828 -2.0644 7 7 2.4108 1.5931 -3.6665 8 6 3.1123 0.8303 -4.7019 9 6 2.8199 1.4306 -6.0530 10 1 2.1755 2.2937 -6.1324 11 6 3.3750 0.8780 -7.1876 12 7 4.1601 -0.1727 -7.0909 13 14 3.0119 1.6216 -8.8623 14 1 3.4735 3.0328 -8.8878 15 1 3.7242 0.8493 -9.9118 16 1 1.5500 1.5742 -9.1186 17 6 3.4361 1.4426 0.3853 18 6 3.8567 2.7944 0.9858 19 6 4.7018 1.9918 1.9931 20 6 4.6606 2.5562 3.4147 21 6 6.1244 1.7030 1.5096 22 6 3.7248 0.8265 1.7644 23 1 -0.3634 0.5108 -0.8917 24 1 -0.3634 -1.0276 0.0036 25 1 -0.3633 0.5169 0.8883 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.7366 2.0384 -1.5297 29 1 2.1874 3.0397 -1.2835 30 1 1.8631 2.3549 -3.9125 31 1 4.1855 0.8640 -4.5136 32 1 2.7726 -0.2052 -4.6836 33 1 4.5509 -0.5613 -7.8892 34 1 4.1031 1.0871 -0.4001 35 1 4.4495 3.4080 0.3074 36 1 3.0343 3.3429 1.4450 37 1 4.9192 1.7708 4.1249 38 1 5.3755 3.3744 3.5017 39 1 3.6579 2.9252 3.6302 40 1 6.1094 1.4964 0.4394 41 1 6.7570 2.5692 1.7035 42 1 6.5201 0.8376 2.0412 43 1 2.8666 0.8379 2.4361 44 1 4.2114 -0.1477 1.7142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839666475.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:33 Heat of formation + Delta-G solvation = -26.713848 kcal Electronic energy + Delta-G solvation = -21353.393683 eV Core-core repulsion = 18305.938787 eV Total energy + Delta-G solvation = -3047.454895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.29410 -38.70824 -35.76206 -34.10796 -32.37921 -30.95824 -29.79777 -27.63016 -27.43098 -26.12744 -25.24638 -22.62133 -22.02108 -20.53554 -19.53002 -18.24342 -16.97290 -16.16332 -15.80566 -15.38622 -15.11922 -14.76532 -14.56450 -14.10794 -13.93640 -13.53994 -13.26438 -12.88325 -12.70556 -12.62810 -12.22534 -11.98926 -11.90508 -11.76499 -11.65120 -11.58054 -11.22147 -11.01117 -10.90594 -10.75572 -10.62949 -10.34475 -10.32226 -10.02371 -9.90819 -9.67777 -9.43509 -8.74384 -7.90578 -7.78543 -6.18726 -4.26064 3.23607 3.28537 3.29638 3.29968 4.10972 4.12867 4.37565 4.50012 4.71773 4.86791 4.90532 5.17147 5.22315 5.31795 5.47429 5.54850 5.58593 5.59965 5.63243 5.70802 5.73665 5.79846 5.86001 5.90461 5.92669 5.95550 6.01801 6.12643 6.15044 6.18052 6.24818 6.49024 6.52250 6.63746 7.16844 7.28581 7.33957 7.41655 7.48370 7.63908 7.94679 8.59218 8.74492 9.05909 9.40740 10.91309 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024911 B = 0.004074 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.713582 B = 6870.714782 C = 7452.571116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.029 3.971 3 N -0.503 5.503 4 C 0.029 3.971 5 C 0.468 3.532 6 O -0.555 6.555 7 N -0.711 5.711 8 C 0.250 3.750 9 C -0.545 4.545 10 H 0.062 0.938 11 C 0.064 3.936 12 N -0.886 5.886 13 Si 0.904 3.096 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C 0.049 3.951 18 C -0.121 4.121 19 C -0.089 4.089 20 C -0.131 4.131 21 C -0.130 4.130 22 C -0.120 4.120 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.390 0.610 31 H 0.025 0.975 32 H 0.025 0.975 33 H 0.266 0.734 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.084 0.916 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.043 5.368 17.526 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 N -0.226 5.226 4 C -0.103 4.103 5 C 0.252 3.748 6 O -0.436 6.436 7 N -0.359 5.359 8 C 0.129 3.871 9 C -0.583 4.583 10 H 0.080 0.920 11 C -0.140 4.140 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.200 1.200 17 C -0.059 4.059 18 C -0.159 4.159 19 C -0.090 4.090 20 C -0.188 4.188 21 C -0.187 4.187 22 C -0.157 4.157 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.223 0.777 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.102 0.898 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.705 4.798 17.963 18.788 hybrid contribution 0.026 0.240 -1.832 1.848 sum -2.679 5.038 16.131 17.110 Atomic orbital electron populations 1.21770 0.95757 1.01042 1.01675 1.22337 0.94921 0.89491 1.03109 1.62696 1.17464 1.17950 1.24464 1.22273 1.01398 0.98962 0.87677 1.21758 0.82602 0.85720 0.84720 1.90572 1.41734 1.29531 1.81776 1.46622 1.49445 1.32942 1.06856 1.19074 0.92373 0.91652 0.84043 1.21197 1.31121 1.14958 0.91017 0.91959 1.24954 0.94672 0.94811 0.99536 1.69964 1.30972 1.21536 1.29854 0.86475 0.78541 0.79166 0.82745 1.20040 1.21051 1.20037 1.23353 0.89292 0.96843 0.96461 1.23201 0.98815 0.96194 0.97668 1.21685 0.94702 0.97359 0.95241 1.21688 1.01537 1.00280 0.95300 1.21612 0.94361 1.01177 1.01544 1.23089 0.98614 0.97231 0.96808 0.93066 0.92743 0.92587 0.91015 0.91369 0.88385 0.88475 0.77711 0.95704 0.95699 0.92389 0.88854 0.92026 0.89591 0.92887 0.92908 0.92569 0.92101 0.92611 0.92568 0.89769 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.96 37.16 0.37 -1.42 16 2 C 0.03 0.42 5.26 -3.82 -0.02 0.40 16 3 N -0.50 -7.16 4.62 -227.12 -1.05 -8.21 16 4 C 0.03 0.42 5.64 -4.98 -0.03 0.39 16 5 C 0.47 9.04 7.03 -10.99 -0.08 8.96 16 6 O -0.56 -12.62 11.82 5.56 0.07 -12.55 16 7 N -0.71 -14.76 5.55 -61.47 -0.34 -15.10 16 8 C 0.25 6.60 5.43 -5.19 -0.03 6.57 16 9 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 10 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 13 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 C 0.05 0.69 2.41 -66.90 -0.16 0.53 16 18 C -0.12 -1.46 6.77 -25.78 -0.17 -1.64 16 19 C -0.09 -0.99 1.39 -153.55 -0.21 -1.20 16 20 C -0.13 -1.21 9.19 37.16 0.34 -0.87 16 21 C -0.13 -1.45 9.08 37.16 0.34 -1.11 16 22 C -0.12 -1.47 5.51 -25.92 -0.14 -1.61 16 23 H 0.05 0.64 6.81 -51.93 -0.35 0.29 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.31 5.25 -51.93 -0.27 1.04 16 27 H 0.07 0.95 6.70 -51.93 -0.35 0.60 16 28 H 0.10 1.25 6.76 -51.93 -0.35 0.90 16 29 H 0.10 1.26 7.95 -51.93 -0.41 0.84 16 30 H 0.39 6.97 8.32 -40.82 -0.34 6.63 16 31 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.09 1.68 5.39 -51.93 -0.28 1.40 16 35 H 0.06 0.76 8.11 -51.93 -0.42 0.34 16 36 H 0.09 0.99 7.97 -51.93 -0.41 0.58 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.50 7.95 -51.93 -0.41 0.09 16 40 H 0.06 0.78 7.35 -51.93 -0.38 0.40 16 41 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.99 8.03 -51.93 -0.42 0.57 16 44 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 344.24 15.07 5.19 5.19 Total: -1.00 -30.35 344.24 -8.37 -38.73 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.74 Total: 5.94 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -0.21 Total: -4.41 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.65 Total: -48.70 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.07 Total: -12.55 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.35 -8.37 -38.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839666475.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.014 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds