Wall clock time and date at job start Mon Mar 30 2020 05:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47272 * 2 1 4 4 C 1.46901 * 110.99981 * 287.63943 * 3 2 1 5 5 C 1.50696 * 109.46929 * 300.77421 * 4 3 2 6 6 O 1.21274 * 120.00472 * 356.48615 * 5 4 3 7 7 N 1.34781 * 119.99534 * 176.48599 * 5 4 3 8 8 C 1.46500 * 119.99751 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.46952 * 179.97438 * 8 7 5 10 10 H 1.07994 * 120.00237 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99442 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00693 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99633 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46914 * 59.99952 * 13 11 9 15 15 H 1.48495 * 109.47165 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47109 * 299.99806 * 13 11 9 17 17 C 1.46901 * 111.00083 * 163.68334 * 3 2 1 18 18 C 1.53782 * 113.61504 * 204.82069 * 17 3 2 19 19 C 1.54049 * 86.98638 * 140.02003 * 18 17 3 20 20 C 1.53002 * 113.61730 * 220.02103 * 19 18 17 21 21 C 1.52998 * 113.69056 * 89.12486 * 19 18 17 22 22 C 1.53778 * 113.61256 * 302.42560 * 17 3 2 23 23 H 1.08999 * 109.47532 * 60.19295 * 1 2 3 24 24 H 1.08997 * 109.47329 * 180.19933 * 1 2 3 25 25 H 1.09003 * 109.47108 * 300.19374 * 1 2 3 26 26 H 1.08998 * 109.47247 * 240.00177 * 2 1 3 27 27 H 1.08999 * 109.47706 * 120.00314 * 2 1 3 28 28 H 1.08995 * 109.47068 * 60.78246 * 4 3 2 29 29 H 1.08997 * 109.46919 * 180.77605 * 4 3 2 30 30 H 0.96999 * 120.00326 * 359.97438 * 7 5 4 31 31 H 1.09004 * 109.46688 * 299.99623 * 8 7 5 32 32 H 1.09000 * 109.47789 * 59.99353 * 8 7 5 33 33 H 0.97001 * 120.00096 * 180.02562 * 12 11 9 34 34 H 1.08999 * 112.84631 * 73.62051 * 17 3 2 35 35 H 1.09001 * 113.61455 * 254.61683 * 18 17 3 36 36 H 1.09001 * 113.61171 * 25.51461 * 18 17 3 37 37 H 1.08997 * 109.46791 * 157.49706 * 20 19 18 38 38 H 1.08999 * 109.47166 * 277.49086 * 20 19 18 39 39 H 1.09002 * 109.47249 * 37.49852 * 20 19 18 40 40 H 1.09002 * 109.46797 * 322.47476 * 21 19 18 41 41 H 1.09008 * 109.46841 * 82.46769 * 21 19 18 42 42 H 1.08996 * 109.47098 * 202.47142 * 21 19 18 43 43 H 1.08998 * 113.61906 * 334.48641 * 22 17 3 44 44 H 1.09005 * 113.61335 * 105.38961 * 22 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8034 2.0199 -1.3070 5 6 2.5255 1.2356 -2.3720 6 8 3.2099 0.2828 -2.0644 7 7 2.4108 1.5931 -3.6665 8 6 3.1123 0.8303 -4.7019 9 6 2.8199 1.4306 -6.0530 10 1 2.1755 2.2937 -6.1324 11 6 3.3750 0.8780 -7.1876 12 7 4.1601 -0.1727 -7.0909 13 14 3.0119 1.6216 -8.8623 14 1 3.4735 3.0328 -8.8878 15 1 3.7242 0.8493 -9.9118 16 1 1.5500 1.5742 -9.1186 17 6 3.4361 1.4426 0.3853 18 6 3.8567 2.7944 0.9858 19 6 4.7018 1.9918 1.9931 20 6 4.6606 2.5562 3.4147 21 6 6.1244 1.7030 1.5096 22 6 3.7248 0.8265 1.7644 23 1 -0.3634 0.5108 -0.8917 24 1 -0.3634 -1.0276 0.0036 25 1 -0.3633 0.5169 0.8883 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.7366 2.0384 -1.5297 29 1 2.1874 3.0397 -1.2835 30 1 1.8631 2.3549 -3.9125 31 1 4.1855 0.8640 -4.5136 32 1 2.7726 -0.2052 -4.6836 33 1 4.5509 -0.5613 -7.8892 34 1 4.1031 1.0871 -0.4001 35 1 4.4495 3.4080 0.3074 36 1 3.0343 3.3429 1.4450 37 1 4.9192 1.7708 4.1249 38 1 5.3755 3.3744 3.5017 39 1 3.6579 2.9252 3.6302 40 1 6.1094 1.4964 0.4394 41 1 6.7570 2.5692 1.7035 42 1 6.5201 0.8376 2.0412 43 1 2.8666 0.8379 2.4361 44 1 4.2114 -0.1477 1.7142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839666475.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:32 Heat of formation + Delta-G solvation = -47.545642 kcal Electronic energy + Delta-G solvation = -21354.297017 eV Core-core repulsion = 18305.938787 eV Total energy + Delta-G solvation = -3048.358230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.55232 -40.07316 -37.08078 -35.96448 -34.39191 -32.00546 -31.03036 -29.36198 -28.28077 -27.38702 -26.45696 -24.53475 -23.14470 -21.94164 -21.07865 -19.26246 -18.78212 -17.54446 -17.29325 -17.06406 -16.49444 -16.24011 -16.01114 -15.49687 -15.09019 -14.72912 -14.56268 -14.15357 -14.07147 -13.82547 -13.75813 -13.57142 -13.07298 -13.00043 -12.74072 -12.71909 -12.65542 -12.54685 -12.30048 -12.25838 -11.76036 -11.65296 -11.53853 -11.45779 -11.30242 -10.99458 -10.89457 -10.79774 -9.81077 -9.16628 -8.31630 -6.49100 1.40998 1.45155 1.53419 1.71863 2.31096 2.62116 2.94955 3.02838 3.56177 3.72866 3.82810 3.91965 4.05615 4.13288 4.38873 4.39558 4.52948 4.58190 4.66279 4.71362 4.78471 4.81382 4.92971 4.95176 4.97180 5.03407 5.05604 5.07302 5.10334 5.16408 5.19814 5.24782 5.28445 5.38767 5.47507 5.59332 5.60925 5.68960 5.81950 6.00008 6.14771 6.62165 6.88724 7.20746 7.47350 8.80061 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024911 B = 0.004074 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.713582 B = 6870.714782 C = 7452.571116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.030 3.970 3 N -0.489 5.489 4 C 0.040 3.960 5 C 0.464 3.536 6 O -0.592 6.592 7 N -0.708 5.708 8 C 0.269 3.731 9 C -0.558 4.558 10 H 0.084 0.916 11 C 0.004 3.996 12 N -0.932 5.932 13 Si 0.985 3.015 14 H -0.261 1.261 15 H -0.285 1.285 16 H -0.261 1.261 17 C 0.037 3.963 18 C -0.111 4.111 19 C -0.083 4.083 20 C -0.125 4.125 21 C -0.130 4.130 22 C -0.114 4.114 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.029 0.971 27 H 0.073 0.927 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.408 0.592 31 H -0.018 1.018 32 H -0.017 1.017 33 H 0.269 0.731 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.032 0.968 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.097 0.903 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.754 7.782 18.545 20.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.098 4.098 3 N -0.210 5.210 4 C -0.091 4.091 5 C 0.251 3.749 6 O -0.475 6.475 7 N -0.358 5.358 8 C 0.146 3.854 9 C -0.596 4.596 10 H 0.102 0.898 11 C -0.196 4.196 12 N -0.570 5.570 13 Si 0.808 3.192 14 H -0.186 1.186 15 H -0.211 1.211 16 H -0.186 1.186 17 C -0.072 4.072 18 C -0.149 4.149 19 C -0.084 4.084 20 C -0.183 4.183 21 C -0.187 4.187 22 C -0.152 4.152 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.048 0.952 27 H 0.092 0.908 28 H 0.143 0.857 29 H 0.140 0.860 30 H 0.243 0.757 31 H 0.000 1.000 32 H 0.001 0.999 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.115 0.885 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.445 7.245 19.019 20.832 hybrid contribution 0.608 -0.591 -2.078 2.244 sum -3.836 6.654 16.941 18.601 Atomic orbital electron populations 1.21718 0.93486 1.01847 1.02447 1.22305 0.96741 0.89430 1.01327 1.62839 1.17187 1.17426 1.23565 1.22424 1.02191 0.98970 0.85560 1.22824 0.81858 0.85342 0.84889 1.90580 1.43215 1.31387 1.82282 1.46380 1.49681 1.33234 1.06508 1.18462 0.90309 0.90473 0.86175 1.21606 1.31333 1.15528 0.91101 0.89797 1.26087 0.94088 0.95029 1.04392 1.70136 1.32310 1.23353 1.31245 0.85205 0.78908 0.78517 0.76595 1.18583 1.21088 1.18559 1.23318 0.88506 0.99060 0.96281 1.23177 0.99251 0.94937 0.97526 1.21667 0.93908 0.96330 0.96479 1.21650 1.02386 1.00708 0.93526 1.21616 0.95178 1.02126 0.99830 1.23081 0.99372 0.97136 0.95618 0.93175 0.92091 0.90733 0.95243 0.90841 0.85665 0.86020 0.75670 0.99967 0.99902 0.92260 0.93222 0.92569 0.88004 0.92182 0.91968 0.91756 0.94845 0.91143 0.91968 0.88475 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.96 71.98 0.72 -2.43 16 2 C 0.03 0.86 5.26 86.30 0.45 1.32 16 3 N -0.49 -13.36 4.62 -872.46 -4.03 -17.39 16 4 C 0.04 1.11 5.64 85.56 0.48 1.59 16 5 C 0.46 18.45 7.03 87.65 0.62 19.07 16 6 O -0.59 -28.74 11.82 -3.01 -0.04 -28.78 16 7 N -0.71 -30.09 5.55 -466.79 -2.59 -32.68 16 8 C 0.27 14.99 5.43 85.63 0.46 15.45 16 9 C -0.56 -30.65 9.28 25.60 0.24 -30.41 16 10 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 11 C 0.00 0.20 5.46 84.65 0.46 0.67 16 12 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 13 Si 0.98 42.50 29.54 68.60 2.03 44.53 16 14 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 15 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 16 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 17 C 0.04 1.05 2.41 45.44 0.11 1.16 16 18 C -0.11 -2.52 6.77 31.21 0.21 -2.31 16 19 C -0.08 -1.73 1.39 -51.56 -0.07 -1.80 16 20 C -0.13 -1.96 9.19 71.98 0.66 -1.30 16 21 C -0.13 -2.89 9.08 71.98 0.65 -2.23 16 22 C -0.11 -2.73 5.51 31.12 0.17 -2.56 16 23 H 0.05 1.15 6.81 -2.39 -0.02 1.14 16 24 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.03 1.13 5.25 -2.39 -0.01 1.11 16 27 H 0.07 2.02 6.70 -2.39 -0.02 2.01 16 28 H 0.13 2.84 6.76 -2.39 -0.02 2.83 16 29 H 0.12 2.83 7.95 -2.39 -0.02 2.81 16 30 H 0.41 14.26 8.32 -92.71 -0.77 13.49 16 31 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 32 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 33 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.05 1.90 5.39 -2.39 -0.01 1.89 16 35 H 0.06 1.33 8.11 -2.39 -0.02 1.31 16 36 H 0.10 2.02 7.97 -2.39 -0.02 2.00 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.06 0.92 7.95 -2.39 -0.02 0.90 16 40 H 0.03 0.91 7.35 -2.39 -0.02 0.89 16 41 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.10 2.08 8.03 -2.39 -0.02 2.06 16 44 H 0.05 1.32 8.10 -2.38 -0.02 1.30 16 Total: -1.00 -69.91 344.24 1.02 -68.89 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.20 Total: 25.79 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 5.17 Total: -3.79 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -6.34 Total: -106.65 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.04 Total: -28.78 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -69.91 1.02 -68.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839666475.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.346 kcal (2) G-P(sol) polarization free energy of solvation -69.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds