Wall clock time and date at job start Mon Mar 30 2020 04:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47023 * 110.99643 * 2 1 4 4 C 1.53095 * 109.25232 * 182.35055 * 3 2 1 5 5 O 1.43014 * 109.29637 * 303.21816 * 4 3 2 6 6 C 1.43017 * 113.73724 * 58.64511 * 5 4 3 7 7 H 1.09001 * 109.50247 * 61.31370 * 6 5 4 8 8 C 1.53001 * 109.50332 * 181.39676 * 6 5 4 9 9 N 1.46499 * 109.47553 * 300.00507 * 8 6 5 10 10 C 1.36934 * 120.00159 * 95.57679 * 9 8 6 11 11 H 1.08002 * 119.99803 * 214.09962 * 10 9 8 12 12 C 1.38807 * 120.00311 * 34.10062 * 10 9 8 13 13 N 1.31623 * 120.00023 * 21.64965 * 12 10 9 14 14 Si 1.86795 * 120.00208 * 201.65682 * 12 10 9 15 15 H 1.48504 * 109.47516 * 89.99665 * 14 12 10 16 16 H 1.48501 * 109.47182 * 209.99585 * 14 12 10 17 17 H 1.48497 * 109.47190 * 329.99536 * 14 12 10 18 18 C 1.46501 * 119.99575 * 275.58117 * 9 8 6 19 19 C 1.54263 * 110.02896 * 237.16220 * 18 9 8 20 20 C 1.54896 * 104.19461 * 217.10701 * 19 18 9 21 21 C 1.54881 * 102.74890 * 37.94548 * 20 19 18 22 22 C 1.53875 * 110.03360 * 119.99990 * 18 9 8 23 23 C 1.47014 * 110.99757 * 123.67889 * 2 1 3 24 24 H 1.08997 * 109.46873 * 296.32252 * 1 2 3 25 25 H 1.09000 * 109.46985 * 56.31819 * 1 2 3 26 26 H 1.09000 * 109.47302 * 176.31927 * 1 2 3 27 27 H 1.09000 * 109.47519 * 62.43604 * 3 2 1 28 28 H 1.09004 * 109.54090 * 302.30376 * 3 2 1 29 29 H 1.09006 * 109.50883 * 183.25782 * 4 3 2 30 30 H 1.09008 * 109.50833 * 63.17283 * 4 3 2 31 31 H 1.09004 * 109.46905 * 60.00241 * 8 6 5 32 32 H 1.09000 * 109.47267 * 180.02562 * 8 6 5 33 33 H 0.96992 * 120.00237 * 180.02562 * 13 12 10 34 34 H 1.08997 * 110.01837 * 358.60755 * 18 9 8 35 35 H 1.09000 * 110.48809 * 335.78253 * 19 18 9 36 36 H 1.09001 * 110.48770 * 98.43147 * 19 18 9 37 37 H 1.09005 * 110.75579 * 279.62664 * 20 19 18 38 38 H 1.08999 * 110.91169 * 156.33272 * 20 19 18 39 39 H 1.09002 * 110.48637 * 203.38346 * 21 20 19 40 40 H 1.09002 * 110.49057 * 80.73794 * 21 20 19 41 41 H 1.09006 * 110.02949 * 238.56988 * 22 18 9 42 42 H 1.09008 * 110.03284 * 359.97438 * 22 18 9 43 43 H 1.08994 * 109.50816 * 57.67416 * 23 2 1 44 44 H 1.08999 * 109.54224 * 297.55758 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9959 1.3726 0.0000 4 6 3.5250 1.3264 -0.0593 5 8 4.0175 0.5566 1.0407 6 6 3.5249 -0.7858 1.0703 7 1 3.8392 -1.3087 0.1670 8 6 4.0825 -1.5076 2.2987 9 7 5.5459 -1.5261 2.2319 10 6 6.2733 -0.5672 2.8848 11 1 7.2003 -0.2105 2.4606 12 6 5.8195 -0.0535 4.0918 13 7 4.9643 -0.7404 4.8194 14 14 6.4221 1.6126 4.6835 15 1 5.5174 2.6752 4.1758 16 1 6.4302 1.6373 6.1683 17 1 7.7976 1.8499 4.1770 18 6 6.2309 -2.5707 1.4664 19 6 7.2087 -3.3393 2.3791 20 6 8.4265 -3.6338 1.4683 21 6 8.5417 -2.3410 0.6231 22 6 7.0785 -1.9360 0.3500 23 6 1.9959 -0.7611 1.1422 24 1 -0.3633 0.4557 0.9211 25 1 -0.3633 0.5699 -0.8552 26 1 -0.3634 -1.0255 -0.0660 27 1 1.6821 1.8823 0.9110 28 1 1.6140 1.9097 -0.8683 29 1 3.9223 2.3399 -0.0012 30 1 3.8392 0.8655 -0.9958 31 1 3.7667 -0.9849 3.2017 32 1 3.7071 -2.5306 2.3205 33 1 4.6469 -0.3814 5.6626 34 1 5.5016 -3.2575 1.0369 35 1 7.5063 -2.7209 3.2259 36 1 6.7570 -4.2692 2.7246 37 1 8.2324 -4.4963 0.8307 38 1 9.3276 -3.7889 2.0617 39 1 9.0628 -2.5424 -0.3129 40 1 9.0547 -1.5614 1.1863 41 1 6.7610 -2.3154 -0.6214 42 1 6.9798 -0.8507 0.3774 43 1 1.6134 -1.7811 1.1073 44 1 1.6828 -0.2865 2.0721 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084222363.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:15 Heat of formation + Delta-G solvation = -22.172966 kcal Electronic energy + Delta-G solvation = -22462.389928 eV Core-core repulsion = 19415.131939 eV Total energy + Delta-G solvation = -3047.257988 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.06321 -37.57911 -35.21648 -34.14720 -31.52781 -30.37864 -28.50122 -27.77366 -26.69962 -25.72693 -23.72216 -23.00592 -20.93636 -19.92516 -19.71783 -18.96844 -16.32526 -15.78316 -15.73230 -15.09282 -14.85858 -14.56428 -14.48481 -14.12624 -14.02075 -13.21454 -13.10092 -12.76179 -12.47670 -12.25010 -12.12096 -11.67918 -11.39699 -11.13644 -10.96595 -10.80906 -10.67394 -10.45433 -10.34184 -10.21613 -10.14745 -10.09778 -9.87772 -9.74778 -9.59595 -9.33917 -8.85107 -8.28689 -8.15263 -6.44262 -5.63783 -3.13897 3.48565 3.54653 3.57150 4.08123 4.55860 4.63993 5.15057 5.29826 5.33508 5.41478 5.50559 5.51977 5.52348 5.60055 5.62545 5.74454 5.81352 5.86489 5.90794 6.01809 6.05723 6.18718 6.20682 6.33115 6.37329 6.47071 6.50076 6.61316 6.62797 6.69187 6.75680 6.83191 6.93627 7.04532 7.16879 7.19330 7.31669 7.43558 7.75072 7.98866 8.11450 8.67789 9.33998 9.99624 10.53447 11.38609 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.007911 C = 0.006200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.680173 B = 3538.445084 C = 4514.683290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.544 5.544 3 C 0.019 3.981 4 C 0.059 3.941 5 O -0.341 6.341 6 C 0.079 3.921 7 H 0.043 0.957 8 C 0.150 3.850 9 N -0.569 5.569 10 C -0.222 4.222 11 H 0.059 0.941 12 C 0.010 3.990 13 N -0.897 5.897 14 Si 0.894 3.106 15 H -0.288 1.288 16 H -0.296 1.296 17 H -0.281 1.281 18 C 0.170 3.830 19 C -0.130 4.130 20 C -0.124 4.124 21 C -0.117 4.117 22 C -0.134 4.134 23 C 0.024 3.976 24 H 0.023 0.977 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.109 0.891 32 H 0.036 0.964 33 H 0.250 0.750 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.046 0.954 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.096 -0.881 -9.118 10.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.109 4.109 4 C -0.020 4.020 5 O -0.259 6.259 6 C 0.018 3.982 7 H 0.061 0.939 8 C 0.022 3.978 9 N -0.287 5.287 10 C -0.352 4.352 11 H 0.077 0.923 12 C -0.189 4.189 13 N -0.541 5.541 14 Si 0.725 3.275 15 H -0.215 1.215 16 H -0.223 1.223 17 H -0.206 1.206 18 C 0.062 3.938 19 C -0.169 4.169 20 C -0.162 4.162 21 C -0.155 4.155 22 C -0.174 4.174 23 C -0.105 4.105 24 H 0.042 0.958 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.126 0.874 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.866 -1.005 -9.224 10.052 hybrid contribution -0.436 1.288 0.736 1.546 sum -4.303 0.282 -8.488 9.521 Atomic orbital electron populations 1.22353 0.87924 1.01912 1.00092 1.62252 1.07367 1.13711 1.43532 1.22799 0.97757 0.89644 1.00693 1.22531 0.91129 0.96768 0.91524 1.88339 1.68733 1.23212 1.45576 1.23223 0.89169 0.84162 1.01683 0.93858 1.21035 0.84341 0.95973 0.96457 1.43794 1.00118 1.28151 1.56590 1.18799 1.05431 1.12044 0.98939 0.92301 1.24934 0.99910 0.98707 0.95299 1.69955 1.35840 1.35960 1.12374 0.86425 0.78494 0.85658 0.76964 1.21526 1.22340 1.20614 1.21034 0.92581 0.89291 0.90858 1.22781 0.95150 0.99312 0.99660 1.22435 0.98642 0.96947 0.98151 1.22250 0.97440 0.97506 0.98311 1.22622 0.94583 1.02216 0.97951 1.22868 0.98132 0.98226 0.91248 0.95830 0.91812 0.91497 0.94343 0.90722 0.89525 0.93479 0.87371 0.94616 0.93974 0.93606 0.89650 0.93684 0.92944 0.92927 0.93535 0.92033 0.94042 0.90803 0.90500 0.94000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.60 60.07 0.58 0.90 16 2 N -0.54 -8.51 4.98 -242.59 -1.21 -9.72 16 3 C 0.02 0.30 5.67 -3.71 -0.02 0.27 16 4 C 0.06 1.00 7.01 37.21 0.26 1.26 16 5 O -0.34 -7.44 10.01 -35.23 -0.35 -7.80 16 6 C 0.08 1.59 3.07 -26.68 -0.08 1.51 16 7 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 8 C 0.15 3.44 4.90 -4.04 -0.02 3.42 16 9 N -0.57 -13.64 2.30 -164.39 -0.38 -14.01 16 10 C -0.22 -5.91 7.27 -15.06 -0.11 -6.02 16 11 H 0.06 1.61 7.29 -52.49 -0.38 1.23 16 12 C 0.01 0.27 4.93 -17.43 -0.09 0.18 16 13 N -0.90 -25.54 11.32 55.49 0.63 -24.92 16 14 Si 0.89 22.28 29.61 -169.99 -5.03 17.24 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 16 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 C 0.17 3.54 3.43 -66.81 -0.23 3.31 16 19 C -0.13 -2.60 6.41 -25.07 -0.16 -2.76 16 20 C -0.12 -2.06 6.91 -24.74 -0.17 -2.23 16 21 C -0.12 -2.00 6.83 -25.08 -0.17 -2.17 16 22 C -0.13 -2.55 6.16 -25.61 -0.16 -2.71 16 23 C 0.02 0.42 4.95 -3.71 -0.02 0.40 16 24 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16 31 H 0.11 2.87 5.33 -51.93 -0.28 2.59 16 32 H 0.04 0.78 8.04 -51.93 -0.42 0.36 16 33 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 34 H 0.05 0.91 7.89 -51.93 -0.41 0.50 16 35 H 0.08 2.00 7.00 -51.93 -0.36 1.63 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.58 7.09 -51.92 -0.37 1.21 16 43 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 337.90 15.07 5.09 5.09 Total: -1.00 -28.68 337.90 -9.76 -38.44 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -8.12 Total: 0.31 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -0.39 Total: -4.64 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.96 Total: -48.65 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.35 Total: -7.80 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.68 -9.76 -38.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084222363.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.268 kcal (2) G-P(sol) polarization free energy of solvation -28.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds