Wall clock time and date at job start Mon Mar 30 2020 04:32:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46906 * 1
3 3 C 1.47023 * 110.99643 * 2 1
4 4 C 1.53095 * 109.25232 * 182.35055 * 3 2 1
5 5 O 1.43014 * 109.29637 * 303.21816 * 4 3 2
6 6 C 1.43017 * 113.73724 * 58.64511 * 5 4 3
7 7 H 1.09001 * 109.50247 * 61.31370 * 6 5 4
8 8 C 1.53001 * 109.50332 * 181.39676 * 6 5 4
9 9 N 1.46499 * 109.47553 * 300.00507 * 8 6 5
10 10 C 1.36934 * 120.00159 * 95.57679 * 9 8 6
11 11 H 1.08002 * 119.99803 * 214.09962 * 10 9 8
12 12 C 1.38807 * 120.00311 * 34.10062 * 10 9 8
13 13 N 1.31623 * 120.00023 * 21.64965 * 12 10 9
14 14 Si 1.86795 * 120.00208 * 201.65682 * 12 10 9
15 15 H 1.48504 * 109.47516 * 89.99665 * 14 12 10
16 16 H 1.48501 * 109.47182 * 209.99585 * 14 12 10
17 17 H 1.48497 * 109.47190 * 329.99536 * 14 12 10
18 18 C 1.46501 * 119.99575 * 275.58117 * 9 8 6
19 19 C 1.54263 * 110.02896 * 237.16220 * 18 9 8
20 20 C 1.54896 * 104.19461 * 217.10701 * 19 18 9
21 21 C 1.54881 * 102.74890 * 37.94548 * 20 19 18
22 22 C 1.53875 * 110.03360 * 119.99990 * 18 9 8
23 23 C 1.47014 * 110.99757 * 123.67889 * 2 1 3
24 24 H 1.08997 * 109.46873 * 296.32252 * 1 2 3
25 25 H 1.09000 * 109.46985 * 56.31819 * 1 2 3
26 26 H 1.09000 * 109.47302 * 176.31927 * 1 2 3
27 27 H 1.09000 * 109.47519 * 62.43604 * 3 2 1
28 28 H 1.09004 * 109.54090 * 302.30376 * 3 2 1
29 29 H 1.09006 * 109.50883 * 183.25782 * 4 3 2
30 30 H 1.09008 * 109.50833 * 63.17283 * 4 3 2
31 31 H 1.09004 * 109.46905 * 60.00241 * 8 6 5
32 32 H 1.09000 * 109.47267 * 180.02562 * 8 6 5
33 33 H 0.96992 * 120.00237 * 180.02562 * 13 12 10
34 34 H 1.08997 * 110.01837 * 358.60755 * 18 9 8
35 35 H 1.09000 * 110.48809 * 335.78253 * 19 18 9
36 36 H 1.09001 * 110.48770 * 98.43147 * 19 18 9
37 37 H 1.09005 * 110.75579 * 279.62664 * 20 19 18
38 38 H 1.08999 * 110.91169 * 156.33272 * 20 19 18
39 39 H 1.09002 * 110.48637 * 203.38346 * 21 20 19
40 40 H 1.09002 * 110.49057 * 80.73794 * 21 20 19
41 41 H 1.09006 * 110.02949 * 238.56988 * 22 18 9
42 42 H 1.09008 * 110.03284 * 359.97438 * 22 18 9
43 43 H 1.08994 * 109.50816 * 57.67416 * 23 2 1
44 44 H 1.08999 * 109.54224 * 297.55758 * 23 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9959 1.3726 0.0000
4 6 3.5250 1.3264 -0.0593
5 8 4.0175 0.5566 1.0407
6 6 3.5249 -0.7858 1.0703
7 1 3.8392 -1.3087 0.1670
8 6 4.0825 -1.5076 2.2987
9 7 5.5459 -1.5261 2.2319
10 6 6.2733 -0.5672 2.8848
11 1 7.2003 -0.2105 2.4606
12 6 5.8195 -0.0535 4.0918
13 7 4.9643 -0.7404 4.8194
14 14 6.4221 1.6126 4.6835
15 1 5.5174 2.6752 4.1758
16 1 6.4302 1.6373 6.1683
17 1 7.7976 1.8499 4.1770
18 6 6.2309 -2.5707 1.4664
19 6 7.2087 -3.3393 2.3791
20 6 8.4265 -3.6338 1.4683
21 6 8.5417 -2.3410 0.6231
22 6 7.0785 -1.9360 0.3500
23 6 1.9959 -0.7611 1.1422
24 1 -0.3633 0.4557 0.9211
25 1 -0.3633 0.5699 -0.8552
26 1 -0.3634 -1.0255 -0.0660
27 1 1.6821 1.8823 0.9110
28 1 1.6140 1.9097 -0.8683
29 1 3.9223 2.3399 -0.0012
30 1 3.8392 0.8655 -0.9958
31 1 3.7667 -0.9849 3.2017
32 1 3.7071 -2.5306 2.3205
33 1 4.6469 -0.3814 5.6626
34 1 5.5016 -3.2575 1.0369
35 1 7.5063 -2.7209 3.2259
36 1 6.7570 -4.2692 2.7246
37 1 8.2324 -4.4963 0.8307
38 1 9.3276 -3.7889 2.0617
39 1 9.0628 -2.5424 -0.3129
40 1 9.0547 -1.5614 1.1863
41 1 6.7610 -2.3154 -0.6214
42 1 6.9798 -0.8507 0.3774
43 1 1.6134 -1.7811 1.1073
44 1 1.6828 -0.2865 2.0721
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000084222363.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:32:15
Heat of formation + Delta-G solvation = -22.172966 kcal
Electronic energy + Delta-G solvation = -22462.389928 eV
Core-core repulsion = 19415.131939 eV
Total energy + Delta-G solvation = -3047.257988 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-39.06321 -37.57911 -35.21648 -34.14720 -31.52781 -30.37864 -28.50122 -27.77366
-26.69962 -25.72693 -23.72216 -23.00592 -20.93636 -19.92516 -19.71783 -18.96844
-16.32526 -15.78316 -15.73230 -15.09282 -14.85858 -14.56428 -14.48481 -14.12624
-14.02075 -13.21454 -13.10092 -12.76179 -12.47670 -12.25010 -12.12096 -11.67918
-11.39699 -11.13644 -10.96595 -10.80906 -10.67394 -10.45433 -10.34184 -10.21613
-10.14745 -10.09778 -9.87772 -9.74778 -9.59595 -9.33917 -8.85107 -8.28689
-8.15263 -6.44262 -5.63783 -3.13897 3.48565 3.54653 3.57150 4.08123
4.55860 4.63993 5.15057 5.29826 5.33508 5.41478 5.50559 5.51977
5.52348 5.60055 5.62545 5.74454 5.81352 5.86489 5.90794 6.01809
6.05723 6.18718 6.20682 6.33115 6.37329 6.47071 6.50076 6.61316
6.62797 6.69187 6.75680 6.83191 6.93627 7.04532 7.16879 7.19330
7.31669 7.43558 7.75072 7.98866 8.11450 8.67789 9.33998 9.99624
10.53447 11.38609
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.015020 B = 0.007911 C = 0.006200
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1863.680173 B = 3538.445084 C = 4514.683290
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 N -0.544 5.544
3 C 0.019 3.981
4 C 0.059 3.941
5 O -0.341 6.341
6 C 0.079 3.921
7 H 0.043 0.957
8 C 0.150 3.850
9 N -0.569 5.569
10 C -0.222 4.222
11 H 0.059 0.941
12 C 0.010 3.990
13 N -0.897 5.897
14 Si 0.894 3.106
15 H -0.288 1.288
16 H -0.296 1.296
17 H -0.281 1.281
18 C 0.170 3.830
19 C -0.130 4.130
20 C -0.124 4.124
21 C -0.117 4.117
22 C -0.134 4.134
23 C 0.024 3.976
24 H 0.023 0.977
25 H 0.063 0.937
26 H 0.066 0.934
27 H 0.038 0.962
28 H 0.074 0.926
29 H 0.087 0.913
30 H 0.047 0.953
31 H 0.109 0.891
32 H 0.036 0.964
33 H 0.250 0.750
34 H 0.046 0.954
35 H 0.085 0.915
36 H 0.044 0.956
37 H 0.052 0.948
38 H 0.052 0.948
39 H 0.046 0.954
40 H 0.061 0.939
41 H 0.041 0.959
42 H 0.073 0.927
43 H 0.077 0.923
44 H 0.042 0.958
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.096 -0.881 -9.118 10.035
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 N -0.269 5.269
3 C -0.109 4.109
4 C -0.020 4.020
5 O -0.259 6.259
6 C 0.018 3.982
7 H 0.061 0.939
8 C 0.022 3.978
9 N -0.287 5.287
10 C -0.352 4.352
11 H 0.077 0.923
12 C -0.189 4.189
13 N -0.541 5.541
14 Si 0.725 3.275
15 H -0.215 1.215
16 H -0.223 1.223
17 H -0.206 1.206
18 C 0.062 3.938
19 C -0.169 4.169
20 C -0.162 4.162
21 C -0.155 4.155
22 C -0.174 4.174
23 C -0.105 4.105
24 H 0.042 0.958
25 H 0.082 0.918
26 H 0.085 0.915
27 H 0.057 0.943
28 H 0.093 0.907
29 H 0.105 0.895
30 H 0.065 0.935
31 H 0.126 0.874
32 H 0.054 0.946
33 H 0.060 0.940
34 H 0.064 0.936
35 H 0.104 0.896
36 H 0.063 0.937
37 H 0.071 0.929
38 H 0.071 0.929
39 H 0.065 0.935
40 H 0.080 0.920
41 H 0.060 0.940
42 H 0.092 0.908
43 H 0.095 0.905
44 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges -3.866 -1.005 -9.224 10.052
hybrid contribution -0.436 1.288 0.736 1.546
sum -4.303 0.282 -8.488 9.521
Atomic orbital electron populations
1.22353 0.87924 1.01912 1.00092 1.62252 1.07367 1.13711 1.43532
1.22799 0.97757 0.89644 1.00693 1.22531 0.91129 0.96768 0.91524
1.88339 1.68733 1.23212 1.45576 1.23223 0.89169 0.84162 1.01683
0.93858 1.21035 0.84341 0.95973 0.96457 1.43794 1.00118 1.28151
1.56590 1.18799 1.05431 1.12044 0.98939 0.92301 1.24934 0.99910
0.98707 0.95299 1.69955 1.35840 1.35960 1.12374 0.86425 0.78494
0.85658 0.76964 1.21526 1.22340 1.20614 1.21034 0.92581 0.89291
0.90858 1.22781 0.95150 0.99312 0.99660 1.22435 0.98642 0.96947
0.98151 1.22250 0.97440 0.97506 0.98311 1.22622 0.94583 1.02216
0.97951 1.22868 0.98132 0.98226 0.91248 0.95830 0.91812 0.91497
0.94343 0.90722 0.89525 0.93479 0.87371 0.94616 0.93974 0.93606
0.89650 0.93684 0.92944 0.92927 0.93535 0.92033 0.94042 0.90803
0.90500 0.94000
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.32 9.60 60.07 0.58 0.90 16
2 N -0.54 -8.51 4.98 -242.59 -1.21 -9.72 16
3 C 0.02 0.30 5.67 -3.71 -0.02 0.27 16
4 C 0.06 1.00 7.01 37.21 0.26 1.26 16
5 O -0.34 -7.44 10.01 -35.23 -0.35 -7.80 16
6 C 0.08 1.59 3.07 -26.68 -0.08 1.51 16
7 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16
8 C 0.15 3.44 4.90 -4.04 -0.02 3.42 16
9 N -0.57 -13.64 2.30 -164.39 -0.38 -14.01 16
10 C -0.22 -5.91 7.27 -15.06 -0.11 -6.02 16
11 H 0.06 1.61 7.29 -52.49 -0.38 1.23 16
12 C 0.01 0.27 4.93 -17.43 -0.09 0.18 16
13 N -0.90 -25.54 11.32 55.49 0.63 -24.92 16
14 Si 0.89 22.28 29.61 -169.99 -5.03 17.24 16
15 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16
16 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16
17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16
18 C 0.17 3.54 3.43 -66.81 -0.23 3.31 16
19 C -0.13 -2.60 6.41 -25.07 -0.16 -2.76 16
20 C -0.12 -2.06 6.91 -24.74 -0.17 -2.23 16
21 C -0.12 -2.00 6.83 -25.08 -0.17 -2.17 16
22 C -0.13 -2.55 6.16 -25.61 -0.16 -2.71 16
23 C 0.02 0.42 4.95 -3.71 -0.02 0.40 16
24 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16
25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16
28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16
29 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16
30 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16
31 H 0.11 2.87 5.33 -51.93 -0.28 2.59 16
32 H 0.04 0.78 8.04 -51.93 -0.42 0.36 16
33 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16
34 H 0.05 0.91 7.89 -51.93 -0.41 0.50 16
35 H 0.08 2.00 7.00 -51.93 -0.36 1.63 16
36 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16
37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
41 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16
42 H 0.07 1.58 7.09 -51.92 -0.37 1.21 16
43 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16
44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16
LS Contribution 337.90 15.07 5.09 5.09
Total: -1.00 -28.68 337.90 -9.76 -38.44
By element:
Atomic # 1 Polarization: 8.42 SS G_CDS: -8.12 Total: 0.31 kcal
Atomic # 6 Polarization: -4.25 SS G_CDS: -0.39 Total: -4.64 kcal
Atomic # 7 Polarization: -47.69 SS G_CDS: -0.96 Total: -48.65 kcal
Atomic # 8 Polarization: -7.44 SS G_CDS: -0.35 Total: -7.80 kcal
Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.24 kcal
Total LS contribution 5.09 Total: 5.09 kcal
Total: -28.68 -9.76 -38.44 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084222363.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.268 kcal
(2) G-P(sol) polarization free energy of solvation -28.683 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.415 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.173 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds