Wall clock time and date at job start Mon Mar 30 2020 04:32:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46906 * 1
3 3 C 1.47023 * 110.99643 * 2 1
4 4 C 1.53095 * 109.25232 * 182.35055 * 3 2 1
5 5 O 1.43014 * 109.29637 * 303.21816 * 4 3 2
6 6 C 1.43017 * 113.73724 * 58.64511 * 5 4 3
7 7 H 1.09001 * 109.50247 * 61.31370 * 6 5 4
8 8 C 1.53001 * 109.50332 * 181.39676 * 6 5 4
9 9 N 1.46499 * 109.47553 * 300.00507 * 8 6 5
10 10 C 1.36934 * 120.00159 * 95.57679 * 9 8 6
11 11 H 1.08002 * 119.99803 * 214.09962 * 10 9 8
12 12 C 1.38807 * 120.00311 * 34.10062 * 10 9 8
13 13 N 1.31623 * 120.00023 * 21.64965 * 12 10 9
14 14 Si 1.86795 * 120.00208 * 201.65682 * 12 10 9
15 15 H 1.48504 * 109.47516 * 89.99665 * 14 12 10
16 16 H 1.48501 * 109.47182 * 209.99585 * 14 12 10
17 17 H 1.48497 * 109.47190 * 329.99536 * 14 12 10
18 18 C 1.46501 * 119.99575 * 275.58117 * 9 8 6
19 19 C 1.54263 * 110.02896 * 237.16220 * 18 9 8
20 20 C 1.54896 * 104.19461 * 217.10701 * 19 18 9
21 21 C 1.54881 * 102.74890 * 37.94548 * 20 19 18
22 22 C 1.53875 * 110.03360 * 119.99990 * 18 9 8
23 23 C 1.47014 * 110.99757 * 123.67889 * 2 1 3
24 24 H 1.08997 * 109.46873 * 296.32252 * 1 2 3
25 25 H 1.09000 * 109.46985 * 56.31819 * 1 2 3
26 26 H 1.09000 * 109.47302 * 176.31927 * 1 2 3
27 27 H 1.09000 * 109.47519 * 62.43604 * 3 2 1
28 28 H 1.09004 * 109.54090 * 302.30376 * 3 2 1
29 29 H 1.09006 * 109.50883 * 183.25782 * 4 3 2
30 30 H 1.09008 * 109.50833 * 63.17283 * 4 3 2
31 31 H 1.09004 * 109.46905 * 60.00241 * 8 6 5
32 32 H 1.09000 * 109.47267 * 180.02562 * 8 6 5
33 33 H 0.96992 * 120.00237 * 180.02562 * 13 12 10
34 34 H 1.08997 * 110.01837 * 358.60755 * 18 9 8
35 35 H 1.09000 * 110.48809 * 335.78253 * 19 18 9
36 36 H 1.09001 * 110.48770 * 98.43147 * 19 18 9
37 37 H 1.09005 * 110.75579 * 279.62664 * 20 19 18
38 38 H 1.08999 * 110.91169 * 156.33272 * 20 19 18
39 39 H 1.09002 * 110.48637 * 203.38346 * 21 20 19
40 40 H 1.09002 * 110.49057 * 80.73794 * 21 20 19
41 41 H 1.09006 * 110.02949 * 238.56988 * 22 18 9
42 42 H 1.09008 * 110.03284 * 359.97438 * 22 18 9
43 43 H 1.08994 * 109.50816 * 57.67416 * 23 2 1
44 44 H 1.08999 * 109.54224 * 297.55758 * 23 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9959 1.3726 0.0000
4 6 3.5250 1.3264 -0.0593
5 8 4.0175 0.5566 1.0407
6 6 3.5249 -0.7858 1.0703
7 1 3.8392 -1.3087 0.1670
8 6 4.0825 -1.5076 2.2987
9 7 5.5459 -1.5261 2.2319
10 6 6.2733 -0.5672 2.8848
11 1 7.2003 -0.2105 2.4606
12 6 5.8195 -0.0535 4.0918
13 7 4.9643 -0.7404 4.8194
14 14 6.4221 1.6126 4.6835
15 1 5.5174 2.6752 4.1758
16 1 6.4302 1.6373 6.1683
17 1 7.7976 1.8499 4.1770
18 6 6.2309 -2.5707 1.4664
19 6 7.2087 -3.3393 2.3791
20 6 8.4265 -3.6338 1.4683
21 6 8.5417 -2.3410 0.6231
22 6 7.0785 -1.9360 0.3500
23 6 1.9959 -0.7611 1.1422
24 1 -0.3633 0.4557 0.9211
25 1 -0.3633 0.5699 -0.8552
26 1 -0.3634 -1.0255 -0.0660
27 1 1.6821 1.8823 0.9110
28 1 1.6140 1.9097 -0.8683
29 1 3.9223 2.3399 -0.0012
30 1 3.8392 0.8655 -0.9958
31 1 3.7667 -0.9849 3.2017
32 1 3.7071 -2.5306 2.3205
33 1 4.6469 -0.3814 5.6626
34 1 5.5016 -3.2575 1.0369
35 1 7.5063 -2.7209 3.2259
36 1 6.7570 -4.2692 2.7246
37 1 8.2324 -4.4963 0.8307
38 1 9.3276 -3.7889 2.0617
39 1 9.0628 -2.5424 -0.3129
40 1 9.0547 -1.5614 1.1863
41 1 6.7610 -2.3154 -0.6214
42 1 6.9798 -0.8507 0.3774
43 1 1.6134 -1.7811 1.1073
44 1 1.6828 -0.2865 2.0721
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000084222363.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:32:14
Heat of formation + Delta-G solvation = -39.804214 kcal
Electronic energy + Delta-G solvation = -22463.154476 eV
Core-core repulsion = 19415.131939 eV
Total energy + Delta-G solvation = -3048.022536 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-40.51497 -39.17635 -36.62656 -35.87449 -33.34851 -32.04857 -29.80711 -29.29919
-28.27412 -27.48607 -25.02184 -24.67374 -22.55399 -21.37579 -21.15336 -20.71205
-18.19773 -17.43254 -17.11039 -16.67623 -16.38258 -16.06616 -15.84297 -15.77835
-15.60020 -14.75199 -14.59677 -14.49765 -14.02274 -13.67519 -13.28070 -13.17716
-12.86332 -12.82891 -12.65112 -12.62048 -12.33360 -12.07335 -11.90148 -11.86947
-11.75876 -11.68929 -11.54919 -11.31010 -11.26145 -11.05972 -10.39363 -10.30185
-9.41938 -8.42359 -7.69940 -5.22089 1.44835 1.49677 1.54048 2.58255
2.86411 3.09833 3.39575 3.65784 4.01837 4.03083 4.04356 4.09809
4.13738 4.26660 4.31106 4.38803 4.55986 4.63607 4.65428 4.71779
4.72954 4.80489 4.83975 4.90535 4.94630 4.95802 4.98946 5.02734
5.08241 5.10497 5.25529 5.28302 5.35453 5.56661 5.71239 5.74727
5.79471 5.90257 5.90980 6.00951 6.52925 6.68742 7.30931 8.03730
8.51608 9.28028
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.015020 B = 0.007911 C = 0.006200
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1863.680173 B = 3538.445084 C = 4514.683290
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 N -0.548 5.548
3 C 0.024 3.976
4 C 0.053 3.947
5 O -0.381 6.381
6 C 0.091 3.909
7 H 0.043 0.957
8 C 0.151 3.849
9 N -0.581 5.581
10 C -0.207 4.207
11 H 0.047 0.953
12 C -0.038 4.038
13 N -0.923 5.923
14 Si 0.940 3.060
15 H -0.295 1.295
16 H -0.299 1.299
17 H -0.274 1.274
18 C 0.160 3.840
19 C -0.129 4.129
20 C -0.112 4.112
21 C -0.114 4.114
22 C -0.126 4.126
23 C 0.033 3.967
24 H 0.020 0.980
25 H 0.086 0.914
26 H 0.078 0.922
27 H 0.026 0.974
28 H 0.108 0.892
29 H 0.098 0.902
30 H 0.054 0.946
31 H 0.074 0.926
32 H 0.041 0.959
33 H 0.244 0.756
34 H 0.057 0.943
35 H 0.044 0.956
36 H 0.048 0.952
37 H 0.079 0.921
38 H 0.064 0.936
39 H 0.078 0.922
40 H 0.044 0.956
41 H 0.063 0.937
42 H 0.043 0.957
43 H 0.092 0.908
44 H 0.021 0.979
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.242 -1.389 -11.485 12.322
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 N -0.273 5.273
3 C -0.104 4.104
4 C -0.025 4.025
5 O -0.300 6.300
6 C 0.030 3.970
7 H 0.061 0.939
8 C 0.023 3.977
9 N -0.300 5.300
10 C -0.338 4.338
11 H 0.065 0.935
12 C -0.233 4.233
13 N -0.570 5.570
14 Si 0.771 3.229
15 H -0.223 1.223
16 H -0.226 1.226
17 H -0.199 1.199
18 C 0.054 3.946
19 C -0.168 4.168
20 C -0.149 4.149
21 C -0.151 4.151
22 C -0.166 4.166
23 C -0.096 4.096
24 H 0.039 0.961
25 H 0.105 0.895
26 H 0.097 0.903
27 H 0.044 0.956
28 H 0.126 0.874
29 H 0.116 0.884
30 H 0.072 0.928
31 H 0.091 0.909
32 H 0.059 0.941
33 H 0.053 0.947
34 H 0.075 0.925
35 H 0.063 0.937
36 H 0.067 0.933
37 H 0.098 0.902
38 H 0.082 0.918
39 H 0.096 0.904
40 H 0.063 0.937
41 H 0.082 0.918
42 H 0.062 0.938
43 H 0.110 0.890
44 H 0.039 0.961
Dipole moment (debyes) X Y Z Total
from point charges -4.009 -1.515 -11.621 12.386
hybrid contribution -0.404 1.425 1.390 2.031
sum -4.413 -0.090 -10.232 11.143
Atomic orbital electron populations
1.22455 0.85642 1.03197 1.00971 1.62277 1.09386 1.13652 1.41990
1.22790 0.96344 0.89737 1.01563 1.22749 0.92673 0.96711 0.90325
1.88260 1.69989 1.23991 1.47745 1.22873 0.90817 0.83581 0.99726
0.93902 1.20904 0.84140 0.96192 0.96447 1.43946 1.00559 1.28722
1.56727 1.18794 1.04717 1.11993 0.98315 0.93519 1.25417 1.00982
1.01001 0.95902 1.70069 1.37425 1.36905 1.12561 0.85679 0.78142
0.82880 0.76247 1.22298 1.22619 1.19914 1.21281 0.93127 0.88979
0.91217 1.22683 0.96781 0.98546 0.98813 1.22386 0.97279 0.97603
0.97665 1.22230 0.96088 0.97161 0.99651 1.22492 0.95734 1.00132
0.98211 1.22672 0.96252 0.99358 0.91283 0.96087 0.89511 0.90315
0.95587 0.87409 0.88411 0.92808 0.90862 0.94076 0.94680 0.92495
0.93735 0.93291 0.90242 0.91764 0.90376 0.93746 0.91799 0.93790
0.88961 0.96069
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.56 9.60 127.69 1.23 1.78 16
2 N -0.55 -16.02 4.98 -921.41 -4.59 -20.61 16
3 C 0.02 0.68 5.67 86.31 0.49 1.17 16
4 C 0.05 1.74 7.01 72.01 0.50 2.25 16
5 O -0.38 -16.79 10.01 -148.98 -1.49 -18.29 16
6 C 0.09 3.67 3.07 30.63 0.09 3.77 16
7 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16
8 C 0.15 7.09 4.90 86.38 0.42 7.52 16
9 N -0.58 -28.41 2.30 -674.02 -1.55 -29.96 16
10 C -0.21 -11.33 7.27 84.03 0.61 -10.72 16
11 H 0.05 2.64 7.29 -2.91 -0.02 2.61 16
12 C -0.04 -2.15 4.93 84.86 0.42 -1.73 16
13 N -0.92 -54.60 11.32 21.65 0.25 -54.35 16
14 Si 0.94 47.09 29.61 68.60 2.03 49.12 16
15 H -0.30 -14.99 7.11 99.48 0.71 -14.29 16
16 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16
17 H -0.27 -13.26 7.11 99.48 0.71 -12.56 16
18 C 0.16 6.60 3.43 45.71 0.16 6.75 16
19 C -0.13 -5.10 6.41 31.67 0.20 -4.90 16
20 C -0.11 -3.42 6.91 31.88 0.22 -3.20 16
21 C -0.11 -3.62 6.83 31.67 0.22 -3.41 16
22 C -0.13 -4.62 6.16 31.32 0.19 -4.43 16
23 C 0.03 1.15 4.95 86.31 0.43 1.57 16
24 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16
25 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16
26 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16
27 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16
28 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16
29 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16
30 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16
31 H 0.07 4.05 5.33 -2.38 -0.01 4.04 16
32 H 0.04 1.83 8.04 -2.39 -0.02 1.81 16
33 H 0.24 14.19 8.31 -92.71 -0.77 13.42 16
34 H 0.06 2.19 7.89 -2.39 -0.02 2.17 16
35 H 0.04 2.12 7.00 -2.39 -0.02 2.10 16
36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16
37 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16
38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16
39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16
40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16
41 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16
42 H 0.04 1.87 7.09 -2.38 -0.02 1.85 16
43 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16
44 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16
Total: -1.00 -63.70 337.90 0.76 -62.93
By element:
Atomic # 1 Polarization: 13.81 SS G_CDS: 0.93 Total: 14.74 kcal
Atomic # 6 Polarization: -8.76 SS G_CDS: 5.18 Total: -3.58 kcal
Atomic # 7 Polarization: -99.03 SS G_CDS: -5.90 Total: -104.93 kcal
Atomic # 8 Polarization: -16.79 SS G_CDS: -1.49 Total: -18.29 kcal
Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal
Total: -63.70 0.76 -62.93 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084222363.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.130 kcal
(2) G-P(sol) polarization free energy of solvation -63.696 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.566 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.934 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.804 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds