Wall clock time and date at job start Mon Mar 30 2020 04:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47023 * 110.99643 * 2 1 4 4 C 1.53095 * 109.25232 * 182.35055 * 3 2 1 5 5 O 1.43014 * 109.29637 * 303.21816 * 4 3 2 6 6 C 1.43017 * 113.73724 * 58.64511 * 5 4 3 7 7 H 1.09001 * 109.50247 * 61.31370 * 6 5 4 8 8 C 1.53001 * 109.50332 * 181.39676 * 6 5 4 9 9 N 1.46499 * 109.47553 * 300.00507 * 8 6 5 10 10 C 1.36934 * 120.00159 * 95.57679 * 9 8 6 11 11 H 1.08002 * 119.99803 * 214.09962 * 10 9 8 12 12 C 1.38807 * 120.00311 * 34.10062 * 10 9 8 13 13 N 1.31623 * 120.00023 * 21.64965 * 12 10 9 14 14 Si 1.86795 * 120.00208 * 201.65682 * 12 10 9 15 15 H 1.48504 * 109.47516 * 89.99665 * 14 12 10 16 16 H 1.48501 * 109.47182 * 209.99585 * 14 12 10 17 17 H 1.48497 * 109.47190 * 329.99536 * 14 12 10 18 18 C 1.46501 * 119.99575 * 275.58117 * 9 8 6 19 19 C 1.54263 * 110.02896 * 237.16220 * 18 9 8 20 20 C 1.54896 * 104.19461 * 217.10701 * 19 18 9 21 21 C 1.54881 * 102.74890 * 37.94548 * 20 19 18 22 22 C 1.53875 * 110.03360 * 119.99990 * 18 9 8 23 23 C 1.47014 * 110.99757 * 123.67889 * 2 1 3 24 24 H 1.08997 * 109.46873 * 296.32252 * 1 2 3 25 25 H 1.09000 * 109.46985 * 56.31819 * 1 2 3 26 26 H 1.09000 * 109.47302 * 176.31927 * 1 2 3 27 27 H 1.09000 * 109.47519 * 62.43604 * 3 2 1 28 28 H 1.09004 * 109.54090 * 302.30376 * 3 2 1 29 29 H 1.09006 * 109.50883 * 183.25782 * 4 3 2 30 30 H 1.09008 * 109.50833 * 63.17283 * 4 3 2 31 31 H 1.09004 * 109.46905 * 60.00241 * 8 6 5 32 32 H 1.09000 * 109.47267 * 180.02562 * 8 6 5 33 33 H 0.96992 * 120.00237 * 180.02562 * 13 12 10 34 34 H 1.08997 * 110.01837 * 358.60755 * 18 9 8 35 35 H 1.09000 * 110.48809 * 335.78253 * 19 18 9 36 36 H 1.09001 * 110.48770 * 98.43147 * 19 18 9 37 37 H 1.09005 * 110.75579 * 279.62664 * 20 19 18 38 38 H 1.08999 * 110.91169 * 156.33272 * 20 19 18 39 39 H 1.09002 * 110.48637 * 203.38346 * 21 20 19 40 40 H 1.09002 * 110.49057 * 80.73794 * 21 20 19 41 41 H 1.09006 * 110.02949 * 238.56988 * 22 18 9 42 42 H 1.09008 * 110.03284 * 359.97438 * 22 18 9 43 43 H 1.08994 * 109.50816 * 57.67416 * 23 2 1 44 44 H 1.08999 * 109.54224 * 297.55758 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9959 1.3726 0.0000 4 6 3.5250 1.3264 -0.0593 5 8 4.0175 0.5566 1.0407 6 6 3.5249 -0.7858 1.0703 7 1 3.8392 -1.3087 0.1670 8 6 4.0825 -1.5076 2.2987 9 7 5.5459 -1.5261 2.2319 10 6 6.2733 -0.5672 2.8848 11 1 7.2003 -0.2105 2.4606 12 6 5.8195 -0.0535 4.0918 13 7 4.9643 -0.7404 4.8194 14 14 6.4221 1.6126 4.6835 15 1 5.5174 2.6752 4.1758 16 1 6.4302 1.6373 6.1683 17 1 7.7976 1.8499 4.1770 18 6 6.2309 -2.5707 1.4664 19 6 7.2087 -3.3393 2.3791 20 6 8.4265 -3.6338 1.4683 21 6 8.5417 -2.3410 0.6231 22 6 7.0785 -1.9360 0.3500 23 6 1.9959 -0.7611 1.1422 24 1 -0.3633 0.4557 0.9211 25 1 -0.3633 0.5699 -0.8552 26 1 -0.3634 -1.0255 -0.0660 27 1 1.6821 1.8823 0.9110 28 1 1.6140 1.9097 -0.8683 29 1 3.9223 2.3399 -0.0012 30 1 3.8392 0.8655 -0.9958 31 1 3.7667 -0.9849 3.2017 32 1 3.7071 -2.5306 2.3205 33 1 4.6469 -0.3814 5.6626 34 1 5.5016 -3.2575 1.0369 35 1 7.5063 -2.7209 3.2259 36 1 6.7570 -4.2692 2.7246 37 1 8.2324 -4.4963 0.8307 38 1 9.3276 -3.7889 2.0617 39 1 9.0628 -2.5424 -0.3129 40 1 9.0547 -1.5614 1.1863 41 1 6.7610 -2.3154 -0.6214 42 1 6.9798 -0.8507 0.3774 43 1 1.6134 -1.7811 1.1073 44 1 1.6828 -0.2865 2.0721 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084222363.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:14 Heat of formation + Delta-G solvation = -39.804214 kcal Electronic energy + Delta-G solvation = -22463.154476 eV Core-core repulsion = 19415.131939 eV Total energy + Delta-G solvation = -3048.022536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.51497 -39.17635 -36.62656 -35.87449 -33.34851 -32.04857 -29.80711 -29.29919 -28.27412 -27.48607 -25.02184 -24.67374 -22.55399 -21.37579 -21.15336 -20.71205 -18.19773 -17.43254 -17.11039 -16.67623 -16.38258 -16.06616 -15.84297 -15.77835 -15.60020 -14.75199 -14.59677 -14.49765 -14.02274 -13.67519 -13.28070 -13.17716 -12.86332 -12.82891 -12.65112 -12.62048 -12.33360 -12.07335 -11.90148 -11.86947 -11.75876 -11.68929 -11.54919 -11.31010 -11.26145 -11.05972 -10.39363 -10.30185 -9.41938 -8.42359 -7.69940 -5.22089 1.44835 1.49677 1.54048 2.58255 2.86411 3.09833 3.39575 3.65784 4.01837 4.03083 4.04356 4.09809 4.13738 4.26660 4.31106 4.38803 4.55986 4.63607 4.65428 4.71779 4.72954 4.80489 4.83975 4.90535 4.94630 4.95802 4.98946 5.02734 5.08241 5.10497 5.25529 5.28302 5.35453 5.56661 5.71239 5.74727 5.79471 5.90257 5.90980 6.00951 6.52925 6.68742 7.30931 8.03730 8.51608 9.28028 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.007911 C = 0.006200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.680173 B = 3538.445084 C = 4514.683290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.024 3.976 4 C 0.053 3.947 5 O -0.381 6.381 6 C 0.091 3.909 7 H 0.043 0.957 8 C 0.151 3.849 9 N -0.581 5.581 10 C -0.207 4.207 11 H 0.047 0.953 12 C -0.038 4.038 13 N -0.923 5.923 14 Si 0.940 3.060 15 H -0.295 1.295 16 H -0.299 1.299 17 H -0.274 1.274 18 C 0.160 3.840 19 C -0.129 4.129 20 C -0.112 4.112 21 C -0.114 4.114 22 C -0.126 4.126 23 C 0.033 3.967 24 H 0.020 0.980 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.026 0.974 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.244 0.756 34 H 0.057 0.943 35 H 0.044 0.956 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.044 0.956 41 H 0.063 0.937 42 H 0.043 0.957 43 H 0.092 0.908 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.242 -1.389 -11.485 12.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.104 4.104 4 C -0.025 4.025 5 O -0.300 6.300 6 C 0.030 3.970 7 H 0.061 0.939 8 C 0.023 3.977 9 N -0.300 5.300 10 C -0.338 4.338 11 H 0.065 0.935 12 C -0.233 4.233 13 N -0.570 5.570 14 Si 0.771 3.229 15 H -0.223 1.223 16 H -0.226 1.226 17 H -0.199 1.199 18 C 0.054 3.946 19 C -0.168 4.168 20 C -0.149 4.149 21 C -0.151 4.151 22 C -0.166 4.166 23 C -0.096 4.096 24 H 0.039 0.961 25 H 0.105 0.895 26 H 0.097 0.903 27 H 0.044 0.956 28 H 0.126 0.874 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.110 0.890 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -4.009 -1.515 -11.621 12.386 hybrid contribution -0.404 1.425 1.390 2.031 sum -4.413 -0.090 -10.232 11.143 Atomic orbital electron populations 1.22455 0.85642 1.03197 1.00971 1.62277 1.09386 1.13652 1.41990 1.22790 0.96344 0.89737 1.01563 1.22749 0.92673 0.96711 0.90325 1.88260 1.69989 1.23991 1.47745 1.22873 0.90817 0.83581 0.99726 0.93902 1.20904 0.84140 0.96192 0.96447 1.43946 1.00559 1.28722 1.56727 1.18794 1.04717 1.11993 0.98315 0.93519 1.25417 1.00982 1.01001 0.95902 1.70069 1.37425 1.36905 1.12561 0.85679 0.78142 0.82880 0.76247 1.22298 1.22619 1.19914 1.21281 0.93127 0.88979 0.91217 1.22683 0.96781 0.98546 0.98813 1.22386 0.97279 0.97603 0.97665 1.22230 0.96088 0.97161 0.99651 1.22492 0.95734 1.00132 0.98211 1.22672 0.96252 0.99358 0.91283 0.96087 0.89511 0.90315 0.95587 0.87409 0.88411 0.92808 0.90862 0.94076 0.94680 0.92495 0.93735 0.93291 0.90242 0.91764 0.90376 0.93746 0.91799 0.93790 0.88961 0.96069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.60 127.69 1.23 1.78 16 2 N -0.55 -16.02 4.98 -921.41 -4.59 -20.61 16 3 C 0.02 0.68 5.67 86.31 0.49 1.17 16 4 C 0.05 1.74 7.01 72.01 0.50 2.25 16 5 O -0.38 -16.79 10.01 -148.98 -1.49 -18.29 16 6 C 0.09 3.67 3.07 30.63 0.09 3.77 16 7 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 8 C 0.15 7.09 4.90 86.38 0.42 7.52 16 9 N -0.58 -28.41 2.30 -674.02 -1.55 -29.96 16 10 C -0.21 -11.33 7.27 84.03 0.61 -10.72 16 11 H 0.05 2.64 7.29 -2.91 -0.02 2.61 16 12 C -0.04 -2.15 4.93 84.86 0.42 -1.73 16 13 N -0.92 -54.60 11.32 21.65 0.25 -54.35 16 14 Si 0.94 47.09 29.61 68.60 2.03 49.12 16 15 H -0.30 -14.99 7.11 99.48 0.71 -14.29 16 16 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 17 H -0.27 -13.26 7.11 99.48 0.71 -12.56 16 18 C 0.16 6.60 3.43 45.71 0.16 6.75 16 19 C -0.13 -5.10 6.41 31.67 0.20 -4.90 16 20 C -0.11 -3.42 6.91 31.88 0.22 -3.20 16 21 C -0.11 -3.62 6.83 31.67 0.22 -3.41 16 22 C -0.13 -4.62 6.16 31.32 0.19 -4.43 16 23 C 0.03 1.15 4.95 86.31 0.43 1.57 16 24 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16 30 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.07 4.05 5.33 -2.38 -0.01 4.04 16 32 H 0.04 1.83 8.04 -2.39 -0.02 1.81 16 33 H 0.24 14.19 8.31 -92.71 -0.77 13.42 16 34 H 0.06 2.19 7.89 -2.39 -0.02 2.17 16 35 H 0.04 2.12 7.00 -2.39 -0.02 2.10 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 42 H 0.04 1.87 7.09 -2.38 -0.02 1.85 16 43 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 44 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -63.70 337.90 0.76 -62.93 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.93 Total: 14.74 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 5.18 Total: -3.58 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -5.90 Total: -104.93 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -1.49 Total: -18.29 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -63.70 0.76 -62.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084222363.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.130 kcal (2) G-P(sol) polarization free energy of solvation -63.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds