Wall clock time and date at job start Mon Mar 30 2020 05:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31972 * 118.83434 * 2 1 4 4 C 1.32286 * 121.21313 * 180.02562 * 3 2 1 5 5 Cl 1.73601 * 120.54191 * 179.97438 * 4 3 2 6 6 C 1.40321 * 118.91240 * 359.74866 * 4 3 2 7 7 C 1.46578 * 121.03360 * 180.25167 * 6 4 3 8 8 O 1.21320 * 120.00059 * 5.48295 * 7 6 4 9 9 C 1.41301 * 117.92894 * 0.48554 * 6 4 3 10 10 N 1.37734 * 120.65149 * 179.78890 * 9 6 4 11 11 C 1.46903 * 110.99522 * 248.55665 * 10 9 6 12 12 C 1.46894 * 110.99876 * 124.60929 * 10 9 6 13 13 C 1.50707 * 109.47095 * 189.99940 * 12 10 9 14 14 H 1.08001 * 119.99896 * 359.71864 * 13 12 10 15 15 C 1.37877 * 120.00118 * 180.02562 * 13 12 10 16 16 N 1.31511 * 120.00134 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99768 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47168 * 90.00512 * 17 15 13 19 19 H 1.48501 * 109.46969 * 210.00109 * 17 15 13 20 20 H 1.48495 * 109.47435 * 330.00093 * 17 15 13 21 21 N 1.31687 * 118.83236 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47182 * 269.98245 * 1 2 3 23 23 H 1.08999 * 109.46940 * 29.98249 * 1 2 3 24 24 H 1.08994 * 109.47040 * 149.98233 * 1 2 3 25 25 H 1.07997 * 120.00068 * 185.48136 * 7 6 4 26 26 H 1.09003 * 109.47524 * 291.00748 * 11 10 9 27 27 H 1.09000 * 109.47561 * 51.01335 * 11 10 9 28 28 H 1.09007 * 109.46876 * 171.01041 * 11 10 9 29 29 H 1.08996 * 109.47777 * 69.99612 * 12 10 9 30 30 H 1.08997 * 109.47093 * 309.99122 * 12 10 9 31 31 H 0.96997 * 120.00156 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1435 1.1561 0.0000 4 6 3.4652 1.2110 -0.0005 5 17 4.2846 2.7415 -0.0012 6 6 4.1940 0.0119 0.0043 7 6 5.6597 0.0185 0.0095 8 8 6.2613 1.0673 0.1101 9 6 3.4709 -1.2021 -0.0010 10 7 4.1296 -2.4117 -0.0010 11 6 3.9459 -3.1110 -1.2798 12 6 3.6929 -3.2489 1.1242 13 6 4.5978 -4.4486 1.2386 14 1 5.4128 -4.5786 0.5419 15 6 4.3815 -5.3834 2.2287 16 7 5.1708 -6.4306 2.3282 17 14 2.9671 -5.1625 3.4288 18 1 1.7509 -5.8200 2.8870 19 1 3.3234 -5.7779 4.7325 20 1 2.7027 -3.7140 3.6211 21 7 2.1420 -1.1536 -0.0005 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3633 0.8901 -0.5136 24 1 -0.3633 -0.8898 -0.5141 25 1 6.2042 -0.9102 -0.0761 26 1 2.9085 -3.4325 -1.3724 27 1 4.1924 -2.4378 -2.1009 28 1 4.6007 -3.9818 -1.3150 29 1 2.6689 -3.5811 0.9541 30 1 3.7386 -2.6702 2.0468 31 1 5.0189 -7.0880 3.0250 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087792470.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:41 Heat of formation + Delta-G solvation = 30.988347 kcal Electronic energy + Delta-G solvation = -18244.243857 eV Core-core repulsion = 15167.075087 eV Total energy + Delta-G solvation = -3077.168770 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.33957 -38.59356 -37.59093 -36.76081 -33.29401 -33.09922 -32.02689 -29.27890 -28.22998 -26.11473 -24.51617 -23.13835 -21.48965 -20.87177 -18.43586 -17.37132 -16.58115 -16.28125 -15.82192 -15.14245 -14.68494 -14.45360 -14.11230 -13.91849 -13.80822 -13.27824 -12.93294 -12.59482 -12.50388 -12.03966 -11.81445 -11.73379 -11.49151 -11.45155 -10.98534 -10.71478 -10.20269 -10.05617 -9.68870 -9.48650 -9.40813 -9.36626 -8.75353 -8.21940 -6.21617 -4.22056 0.18590 0.80933 1.49548 2.46495 3.18898 3.26941 3.29186 3.53410 3.65598 3.80746 4.20951 4.28179 4.47163 4.81219 4.98469 5.11469 5.37377 5.42211 5.50813 5.70107 5.72416 5.95142 6.02842 6.35482 6.56513 6.59427 6.72859 7.24102 7.28452 7.49807 7.64806 7.87180 8.38239 8.83235 9.37501 10.90441 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.021236 B = 0.006278 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.173125 B = 4459.017285 C = 5092.471946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.370 3.630 3 N -0.539 5.539 4 C 0.272 3.728 5 Cl 0.014 6.986 6 C -0.275 4.275 7 C 0.400 3.600 8 O -0.453 6.453 9 C 0.429 3.571 10 N -0.490 5.490 11 C 0.044 3.956 12 C 0.170 3.830 13 C -0.519 4.519 14 H 0.087 0.913 15 C 0.076 3.924 16 N -0.891 5.891 17 Si 0.872 3.128 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.269 1.269 21 N -0.551 5.551 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.132 0.868 26 H 0.039 0.961 27 H 0.051 0.949 28 H 0.097 0.903 29 H 0.011 0.989 30 H 0.028 0.972 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.513 12.510 -6.102 15.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.103 3.897 3 N -0.257 5.257 4 C 0.098 3.902 5 Cl 0.043 6.957 6 C -0.283 4.283 7 C 0.257 3.743 8 O -0.326 6.326 9 C 0.191 3.809 10 N -0.214 5.214 11 C -0.102 4.102 12 C 0.046 3.954 13 C -0.557 4.557 14 H 0.105 0.895 15 C -0.127 4.127 16 N -0.529 5.529 17 Si 0.699 3.301 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.193 1.193 21 N -0.271 5.271 22 H 0.110 0.890 23 H 0.108 0.892 24 H 0.110 0.890 25 H 0.149 0.851 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.116 0.884 29 H 0.028 0.972 30 H 0.046 0.954 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.556 13.083 -5.881 15.772 hybrid contribution -0.742 -0.111 0.766 1.072 sum -7.299 12.972 -5.115 15.739 Atomic orbital electron populations 1.20692 0.84975 1.04547 1.04426 1.23296 0.98120 0.82039 0.86250 1.67707 1.08289 1.30965 1.18786 1.22415 0.89414 0.88497 0.89851 1.98456 1.75374 1.26683 1.95146 1.22235 1.00560 0.92045 1.13496 1.23793 0.86417 0.94087 0.69990 1.90561 1.71030 1.36408 1.34566 1.20811 0.85878 0.92654 0.81552 1.60019 1.52232 1.02031 1.07078 1.22315 1.01753 0.98999 0.87141 1.20335 0.95963 0.92411 0.86677 1.20870 1.14857 1.03544 1.16461 0.89539 1.24805 0.96030 0.94835 0.97014 1.69858 1.37894 1.11455 1.33717 0.86915 0.83111 0.78850 0.81247 1.19954 1.20874 1.19347 1.68721 1.11039 1.30107 1.17190 0.88979 0.89241 0.88978 0.85143 0.94216 0.92965 0.88408 0.97153 0.95400 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 10.30 36.01 0.37 -0.53 16 2 C 0.37 5.51 7.64 -157.13 -1.20 4.31 16 3 N -0.54 -8.34 10.30 -7.50 -0.08 -8.41 16 4 C 0.27 4.34 7.38 -16.57 -0.12 4.21 16 5 Cl 0.01 0.21 26.42 -51.86 -1.37 -1.16 16 6 C -0.27 -4.51 5.92 -104.59 -0.62 -5.13 16 7 C 0.40 6.20 11.19 34.09 0.38 6.59 16 8 O -0.45 -7.59 15.02 5.52 0.08 -7.51 16 9 C 0.43 7.56 5.27 -154.92 -0.82 6.75 16 10 N -0.49 -9.28 3.95 -181.95 -0.72 -10.00 16 11 C 0.04 0.73 9.21 60.07 0.55 1.28 16 12 C 0.17 3.84 3.47 -4.98 -0.02 3.82 16 13 C -0.52 -13.51 9.14 -34.44 -0.31 -13.82 16 14 H 0.09 2.39 7.33 -52.49 -0.38 2.00 16 15 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 16 N -0.89 -25.74 13.96 55.43 0.77 -24.97 16 17 Si 0.87 20.56 27.47 -169.99 -4.67 15.89 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 21 N -0.55 -9.44 9.82 -9.71 -0.10 -9.54 16 22 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.13 1.87 7.68 -52.49 -0.40 1.47 16 26 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 27 H 0.05 0.73 8.07 -51.93 -0.42 0.31 16 28 H 0.10 1.70 7.00 -51.93 -0.36 1.34 16 29 H 0.01 0.25 7.42 -51.93 -0.39 -0.14 16 30 H 0.03 0.66 7.11 -51.93 -0.37 0.29 16 31 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 288.09 15.07 4.34 4.34 Total: -1.00 -29.51 288.09 -6.79 -36.31 By element: Atomic # 1 Polarization: -1.22 SS G_CDS: -3.18 Total: -4.40 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: -1.88 Total: 9.45 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.12 Total: -52.91 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.08 Total: -7.51 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.67 Total: 15.89 kcal Atomic # 17 Polarization: 0.21 SS G_CDS: -1.37 Total: -1.16 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.51 -6.79 -36.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087792470.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.296 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds