Wall clock time and date at job start Mon Mar 30 2020 05:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31972 * 118.83434 * 2 1 4 4 C 1.32286 * 121.21313 * 180.02562 * 3 2 1 5 5 Cl 1.73601 * 120.54191 * 179.97438 * 4 3 2 6 6 C 1.40321 * 118.91240 * 359.74866 * 4 3 2 7 7 C 1.46578 * 121.03360 * 180.25167 * 6 4 3 8 8 O 1.21320 * 120.00059 * 5.48295 * 7 6 4 9 9 C 1.41301 * 117.92894 * 0.48554 * 6 4 3 10 10 N 1.37734 * 120.65149 * 179.78890 * 9 6 4 11 11 C 1.46903 * 110.99522 * 248.55665 * 10 9 6 12 12 C 1.46894 * 110.99876 * 124.60929 * 10 9 6 13 13 C 1.50707 * 109.47095 * 189.99940 * 12 10 9 14 14 H 1.08001 * 119.99896 * 359.71864 * 13 12 10 15 15 C 1.37877 * 120.00118 * 180.02562 * 13 12 10 16 16 N 1.31511 * 120.00134 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99768 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47168 * 90.00512 * 17 15 13 19 19 H 1.48501 * 109.46969 * 210.00109 * 17 15 13 20 20 H 1.48495 * 109.47435 * 330.00093 * 17 15 13 21 21 N 1.31687 * 118.83236 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47182 * 269.98245 * 1 2 3 23 23 H 1.08999 * 109.46940 * 29.98249 * 1 2 3 24 24 H 1.08994 * 109.47040 * 149.98233 * 1 2 3 25 25 H 1.07997 * 120.00068 * 185.48136 * 7 6 4 26 26 H 1.09003 * 109.47524 * 291.00748 * 11 10 9 27 27 H 1.09000 * 109.47561 * 51.01335 * 11 10 9 28 28 H 1.09007 * 109.46876 * 171.01041 * 11 10 9 29 29 H 1.08996 * 109.47777 * 69.99612 * 12 10 9 30 30 H 1.08997 * 109.47093 * 309.99122 * 12 10 9 31 31 H 0.96997 * 120.00156 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1435 1.1561 0.0000 4 6 3.4652 1.2110 -0.0005 5 17 4.2846 2.7415 -0.0012 6 6 4.1940 0.0119 0.0043 7 6 5.6597 0.0185 0.0095 8 8 6.2613 1.0673 0.1101 9 6 3.4709 -1.2021 -0.0010 10 7 4.1296 -2.4117 -0.0010 11 6 3.9459 -3.1110 -1.2798 12 6 3.6929 -3.2489 1.1242 13 6 4.5978 -4.4486 1.2386 14 1 5.4128 -4.5786 0.5419 15 6 4.3815 -5.3834 2.2287 16 7 5.1708 -6.4306 2.3282 17 14 2.9671 -5.1625 3.4288 18 1 1.7509 -5.8200 2.8870 19 1 3.3234 -5.7779 4.7325 20 1 2.7027 -3.7140 3.6211 21 7 2.1420 -1.1536 -0.0005 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3633 0.8901 -0.5136 24 1 -0.3633 -0.8898 -0.5141 25 1 6.2042 -0.9102 -0.0761 26 1 2.9085 -3.4325 -1.3724 27 1 4.1924 -2.4378 -2.1009 28 1 4.6007 -3.9818 -1.3150 29 1 2.6689 -3.5811 0.9541 30 1 3.7386 -2.6702 2.0468 31 1 5.0189 -7.0880 3.0250 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087792470.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:41 Heat of formation + Delta-G solvation = 12.050720 kcal Electronic energy + Delta-G solvation = -18245.065054 eV Core-core repulsion = 15167.075087 eV Total energy + Delta-G solvation = -3077.989968 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.59569 -39.85865 -39.01194 -37.97893 -34.95544 -34.45706 -33.54083 -30.34728 -30.01930 -27.53133 -25.70975 -24.71960 -22.82361 -22.35490 -19.72607 -19.13470 -18.10341 -17.52024 -17.16297 -16.50277 -16.40963 -15.80570 -15.54957 -15.23798 -15.10222 -14.65310 -14.45500 -13.96052 -13.51736 -13.35258 -13.20842 -13.03712 -12.90028 -12.75538 -12.63167 -12.38527 -11.91794 -11.60057 -11.47971 -10.88769 -10.82365 -10.64375 -10.60807 -9.74595 -8.30148 -6.34303 -1.03855 -0.48289 0.29029 1.24115 1.33495 1.36166 1.44013 2.28637 2.31428 2.33520 2.71515 2.97836 3.03157 3.16414 3.56846 3.80363 4.23718 4.49464 4.54519 4.58908 4.63592 4.69165 4.73610 4.86013 5.06362 5.14501 5.35517 5.47294 5.63876 5.98555 6.26103 6.41302 6.64793 6.72820 7.28751 8.84942 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.021236 B = 0.006278 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.173125 B = 4459.017285 C = 5092.471946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.368 3.632 3 N -0.539 5.539 4 C 0.268 3.732 5 Cl 0.026 6.974 6 C -0.281 4.281 7 C 0.407 3.593 8 O -0.467 6.467 9 C 0.419 3.581 10 N -0.494 5.494 11 C 0.047 3.953 12 C 0.185 3.815 13 C -0.516 4.516 14 H 0.059 0.941 15 C 0.022 3.978 16 N -0.936 5.936 17 Si 0.932 3.068 18 H -0.264 1.264 19 H -0.281 1.281 20 H -0.261 1.261 21 N -0.568 5.568 22 H 0.107 0.893 23 H 0.110 0.890 24 H 0.102 0.898 25 H 0.143 0.857 26 H 0.037 0.963 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.009 0.991 30 H 0.019 0.981 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.265 13.877 -6.142 17.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.102 3.898 3 N -0.257 5.257 4 C 0.094 3.906 5 Cl 0.055 6.945 6 C -0.290 4.290 7 C 0.265 3.735 8 O -0.340 6.340 9 C 0.181 3.819 10 N -0.217 5.217 11 C -0.098 4.098 12 C 0.060 3.940 13 C -0.554 4.554 14 H 0.078 0.922 15 C -0.177 4.177 16 N -0.576 5.576 17 Si 0.757 3.243 18 H -0.189 1.189 19 H -0.207 1.207 20 H -0.185 1.185 21 N -0.287 5.287 22 H 0.125 0.875 23 H 0.128 0.872 24 H 0.120 0.880 25 H 0.159 0.841 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.027 0.973 30 H 0.037 0.963 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.323 14.472 -5.941 17.721 hybrid contribution -0.186 -0.459 0.691 0.850 sum -8.510 14.014 -5.250 17.215 Atomic orbital electron populations 1.20899 0.81690 1.06065 1.05721 1.24162 0.99862 0.81169 0.84584 1.67853 1.07963 1.31176 1.18724 1.22590 0.89790 0.88850 0.89413 1.98460 1.75260 1.25805 1.94999 1.22239 1.00843 0.91878 1.14019 1.23910 0.86172 0.94197 0.69267 1.90555 1.71145 1.36901 1.35374 1.20696 0.86452 0.92109 0.82663 1.59829 1.52778 1.02240 1.06877 1.22312 1.01282 0.99123 0.87124 1.19965 0.94806 0.91397 0.87831 1.21071 1.14325 1.04644 1.15367 0.92246 1.25586 0.98510 0.94604 0.98965 1.69987 1.40036 1.12666 1.34931 0.85946 0.80248 0.79161 0.78990 1.18935 1.20695 1.18485 1.68731 1.10701 1.31321 1.17967 0.87503 0.87184 0.87978 0.84067 0.94395 0.90062 0.89826 0.97334 0.96285 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.48 10.30 71.24 0.73 -0.74 16 2 C 0.37 10.03 7.64 138.73 1.06 11.09 16 3 N -0.54 -15.42 10.30 -177.64 -1.83 -17.25 16 4 C 0.27 8.06 7.38 85.13 0.63 8.69 16 5 Cl 0.03 0.71 26.42 -2.72 -0.07 0.63 16 6 C -0.28 -8.84 5.92 -19.84 -0.12 -8.96 16 7 C 0.41 12.18 11.19 70.00 0.78 12.96 16 8 O -0.47 -15.11 15.02 -3.15 -0.05 -15.15 16 9 C 0.42 14.18 5.27 133.86 0.71 14.88 16 10 N -0.49 -18.31 3.95 -729.57 -2.88 -21.19 16 11 C 0.05 1.53 9.21 127.69 1.18 2.71 16 12 C 0.19 8.23 3.47 85.56 0.30 8.53 16 13 C -0.52 -27.09 9.14 25.60 0.23 -26.86 16 14 H 0.06 3.38 7.33 -2.91 -0.02 3.35 16 15 C 0.02 1.23 5.47 84.66 0.46 1.69 16 16 N -0.94 -54.96 13.96 21.45 0.30 -54.66 16 17 Si 0.93 41.99 27.47 68.60 1.88 43.87 16 18 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.26 -11.30 6.54 99.48 0.65 -10.65 16 21 N -0.57 -18.32 9.82 -184.64 -1.81 -20.14 16 22 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.11 1.46 8.14 -2.39 -0.02 1.45 16 24 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.14 3.93 7.68 -2.91 -0.02 3.90 16 26 H 0.04 1.23 8.08 -2.39 -0.02 1.21 16 27 H 0.08 2.14 8.07 -2.39 -0.02 2.12 16 28 H 0.08 2.94 7.00 -2.38 -0.02 2.92 16 29 H 0.01 0.40 7.42 -2.39 -0.02 0.38 16 30 H 0.02 0.88 7.11 -2.39 -0.02 0.87 16 31 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -62.31 288.09 2.61 -59.70 By element: Atomic # 1 Polarization: -0.91 SS G_CDS: 1.10 Total: 0.19 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: 5.96 Total: 23.98 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -6.22 Total: -113.23 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.05 Total: -15.15 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.88 Total: 43.87 kcal Atomic # 17 Polarization: 0.71 SS G_CDS: -0.07 Total: 0.63 kcal Total: -62.31 2.61 -59.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087792470.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.754 kcal (2) G-P(sol) polarization free energy of solvation -62.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds