Wall clock time and date at job start Mon Mar 30 2020 05:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31929 * 119.01941 * 2 1 4 4 C 1.32140 * 121.05445 * 180.02562 * 3 2 1 5 5 C 1.38982 * 119.12647 * 359.74139 * 4 3 2 6 6 Cl 1.73603 * 120.88566 * 180.25493 * 5 4 3 7 7 C 1.39630 * 118.22971 * 0.51928 * 5 4 3 8 8 C 1.48367 * 120.56574 * 179.76270 * 7 5 4 9 9 O 1.21486 * 119.99759 * 353.82940 * 8 7 5 10 10 N 1.34775 * 119.99979 * 173.83262 * 8 7 5 11 11 C 1.46500 * 120.00291 * 3.07944 * 10 8 7 12 12 C 1.46506 * 120.00160 * 183.08240 * 10 8 7 13 13 C 1.50695 * 109.46934 * 89.99678 * 12 10 8 14 14 H 1.07998 * 120.00210 * 0.02562 * 13 12 10 15 15 C 1.37884 * 119.99922 * 180.02562 * 13 12 10 16 16 N 1.31508 * 119.99986 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99797 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47324 * 89.99755 * 17 15 13 19 19 H 1.48501 * 109.46887 * 209.99978 * 17 15 13 20 20 H 1.48500 * 109.46900 * 329.99589 * 17 15 13 21 21 N 1.31522 * 119.01995 * 180.02562 * 2 1 3 22 22 H 1.09004 * 109.46446 * 269.97788 * 1 2 3 23 23 H 1.08998 * 109.46983 * 29.97586 * 1 2 3 24 24 H 1.09000 * 109.47296 * 149.98123 * 1 2 3 25 25 H 1.08005 * 120.43082 * 179.97438 * 4 3 2 26 26 H 1.09003 * 109.46860 * 83.90409 * 11 10 8 27 27 H 1.08997 * 109.47574 * 203.90194 * 11 10 8 28 28 H 1.09007 * 109.47174 * 323.90928 * 11 10 8 29 29 H 1.09000 * 109.47341 * 209.99702 * 12 10 8 30 30 H 1.08998 * 109.46443 * 330.00083 * 12 10 8 31 31 H 0.97006 * 119.99838 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2006 -0.0005 5 6 4.1867 0.0113 0.0044 6 17 5.9227 0.0197 0.0106 7 6 3.4758 -1.1904 -0.0014 8 6 4.1912 -2.4903 -0.0018 9 8 5.4009 -2.5177 -0.1102 10 7 3.4990 -3.6404 0.1180 11 6 2.0356 -3.6116 0.1807 12 6 4.2099 -4.9197 0.1855 13 6 4.5165 -5.2486 1.6238 14 1 4.2118 -4.5727 2.4091 15 6 5.1859 -6.4125 1.9373 16 7 5.4530 -6.6998 3.1925 17 14 5.7134 -7.5813 0.5789 18 1 7.0755 -7.2165 0.1131 19 1 5.7241 -8.9722 1.0991 20 1 4.7599 -7.4844 -0.5554 21 7 2.1450 -1.1501 -0.0005 22 1 -0.3632 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3634 -0.8898 -0.5141 25 1 3.9812 2.1507 -0.0009 26 1 1.6293 -3.5745 -0.8301 27 1 1.6757 -4.5089 0.6841 28 1 1.7129 -2.7299 0.7346 29 1 3.5864 -5.7049 -0.2418 30 1 5.1407 -4.8481 -0.3772 31 1 5.9237 -7.5189 3.4130 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155341434.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:56 Heat of formation + Delta-G solvation = 14.587589 kcal Electronic energy + Delta-G solvation = -18241.752973 eV Core-core repulsion = 15163.873012 eV Total energy + Delta-G solvation = -3077.879961 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.54947 -40.43939 -37.85807 -36.79679 -35.35758 -34.51222 -34.07666 -30.57980 -29.37907 -27.81498 -26.64381 -24.85676 -23.61820 -21.02463 -19.35843 -19.17149 -18.33377 -17.40627 -17.13545 -16.98402 -16.30391 -16.04292 -15.61343 -14.95558 -14.65059 -14.37540 -14.08792 -13.75605 -13.68245 -13.32635 -13.19779 -13.06724 -12.81990 -12.50944 -12.46369 -12.25723 -12.07138 -11.91414 -11.76578 -11.21661 -10.84349 -10.34415 -10.09708 -9.44393 -8.35370 -6.41698 -0.85942 -0.41854 0.83593 1.33608 1.37659 1.46138 1.63338 1.91642 2.30539 2.48710 2.64489 2.83256 2.98894 3.17694 3.38133 3.82892 4.23875 4.51897 4.66563 4.72062 4.76909 4.81387 4.83933 4.91126 5.15464 5.33402 5.40560 5.45762 5.55993 6.18671 6.44984 6.59155 6.67952 7.05234 7.24212 8.81551 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.023731 B = 0.006051 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.592318 B = 4625.959796 C = 5400.935948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.307 3.693 3 N -0.496 5.496 4 C 0.184 3.816 5 C -0.122 4.122 6 Cl -0.013 7.013 7 C 0.138 3.862 8 C 0.539 3.461 9 O -0.545 6.545 10 N -0.579 5.579 11 C 0.077 3.923 12 C 0.223 3.777 13 C -0.539 4.539 14 H 0.027 0.973 15 C 0.014 3.986 16 N -0.944 5.944 17 Si 0.948 3.052 18 H -0.274 1.274 19 H -0.274 1.274 20 H -0.237 1.237 21 N -0.480 5.480 22 H 0.104 0.896 23 H 0.107 0.893 24 H 0.102 0.898 25 H 0.222 0.778 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.056 0.944 30 H 0.028 0.972 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.624 15.554 -9.700 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.041 3.959 3 N -0.210 5.210 4 C 0.015 3.985 5 C -0.155 4.155 6 Cl 0.016 6.984 7 C -0.010 4.010 8 C 0.324 3.676 9 O -0.422 6.422 10 N -0.309 5.309 11 C -0.065 4.065 12 C 0.101 3.899 13 C -0.578 4.578 14 H 0.045 0.955 15 C -0.184 4.184 16 N -0.583 5.583 17 Si 0.771 3.229 18 H -0.199 1.199 19 H -0.199 1.199 20 H -0.160 1.160 21 N -0.199 5.199 22 H 0.123 0.877 23 H 0.126 0.874 24 H 0.120 0.880 25 H 0.238 0.762 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.125 0.875 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.780 15.322 -9.648 21.073 hybrid contribution 1.811 -0.809 0.197 1.993 sum -8.969 14.514 -9.451 19.504 Atomic orbital electron populations 1.20835 0.81594 1.06083 1.05640 1.24436 1.00491 0.82534 0.88412 1.68452 1.08862 1.30209 1.13516 1.23970 0.89047 0.97515 0.87964 1.23020 0.89537 0.96344 1.06626 1.98434 1.05257 1.98611 1.96060 1.21550 0.90626 0.93599 0.95194 1.18171 0.86586 0.83676 0.79119 1.90804 1.13905 1.86594 1.50901 1.47873 1.09140 1.05953 1.67945 1.22476 0.76858 1.04202 1.02992 1.19508 0.93296 0.81514 0.95595 1.21476 1.37908 1.06174 0.92226 0.95507 1.25837 0.94798 0.99580 0.98207 1.70045 1.42083 1.26499 1.19705 0.85707 0.79785 0.77778 0.79658 1.19931 1.19931 1.16001 1.68919 1.06353 1.30349 1.14241 0.87725 0.87448 0.87966 0.76202 0.90914 0.91917 0.87460 0.92591 0.95408 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.31 71.23 0.73 -0.31 16 2 C 0.31 6.75 7.64 138.79 1.06 7.81 16 3 N -0.50 -10.66 10.31 -187.77 -1.94 -12.60 16 4 C 0.18 3.91 11.14 84.83 0.94 4.86 16 5 C -0.12 -3.59 6.40 22.78 0.15 -3.44 16 6 Cl -0.01 -0.40 26.27 -2.72 -0.07 -0.47 16 7 C 0.14 4.71 6.67 41.98 0.28 4.99 16 8 C 0.54 23.44 7.66 86.94 0.67 24.10 16 9 O -0.54 -26.95 13.74 -3.67 -0.05 -27.00 16 10 N -0.58 -25.11 2.86 -853.97 -2.44 -27.55 16 11 C 0.08 2.53 9.41 127.77 1.20 3.74 16 12 C 0.22 11.00 4.22 85.63 0.36 11.36 16 13 C -0.54 -32.07 9.94 25.60 0.25 -31.81 16 14 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 15 C 0.01 0.84 5.47 84.66 0.46 1.30 16 16 N -0.94 -59.81 13.96 21.45 0.30 -59.51 16 17 Si 0.95 44.25 27.47 68.60 1.88 46.14 16 18 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 21 N -0.48 -13.54 6.08 -177.05 -1.08 -14.62 16 22 H 0.10 1.08 8.14 -2.39 -0.02 1.07 16 23 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.22 2.80 8.06 -2.91 -0.02 2.77 16 26 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.06 2.10 8.03 -2.39 -0.02 2.08 16 28 H 0.11 3.35 5.15 -3.51 -0.02 3.33 16 29 H 0.06 2.52 7.13 -2.39 -0.02 2.51 16 30 H 0.03 1.44 6.81 -2.39 -0.02 1.43 16 31 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 Total: -1.00 -75.70 284.41 3.82 -71.88 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: 1.10 Total: 1.13 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: 6.11 Total: 22.59 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -5.15 Total: -114.28 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.05 Total: -27.00 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.14 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.07 Total: -0.47 kcal Total: -75.70 3.82 -71.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155341434.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.470 kcal (2) G-P(sol) polarization free energy of solvation -75.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds