Wall clock time and date at job start Mon Mar 30 2020 05:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47210 * 2 1 4 4 N 1.46502 * 109.47048 * 120.00294 * 2 1 3 5 5 C 1.36797 * 119.99993 * 330.41201 * 4 2 1 6 6 H 1.08001 * 120.00261 * 311.81195 * 5 4 2 7 7 C 1.39095 * 119.99986 * 131.80428 * 5 4 2 8 8 N 1.31328 * 120.00245 * 168.50183 * 7 5 4 9 9 Si 1.86802 * 119.99780 * 348.50343 * 7 5 4 10 10 H 1.48499 * 109.47143 * 95.13865 * 9 7 5 11 11 H 1.48506 * 109.47155 * 215.13292 * 9 7 5 12 12 H 1.48500 * 109.47484 * 335.13719 * 9 7 5 13 13 C 1.34775 * 119.99827 * 150.41551 * 4 2 1 14 14 O 1.21568 * 119.99849 * 187.41297 * 13 4 2 15 15 C 1.47941 * 120.00410 * 7.41765 * 13 4 2 16 16 C 1.39873 * 120.17653 * 187.75356 * 15 13 4 17 17 C 1.38673 * 117.91211 * 179.97438 * 16 15 13 18 18 C 1.38806 * 118.06926 * 0.02562 * 17 16 15 19 19 Cl 1.73601 * 119.97416 * 180.02562 * 18 17 16 20 20 N 1.32285 * 120.05240 * 359.97438 * 18 17 16 21 21 N 1.28352 * 122.28262 * 0.02562 * 20 18 17 22 22 H 1.09001 * 109.47201 * 305.32754 * 1 2 3 23 23 H 1.09000 * 109.47061 * 65.32964 * 1 2 3 24 24 H 1.09000 * 109.47217 * 185.32508 * 1 2 3 25 25 H 1.09000 * 109.47070 * 240.00413 * 2 1 3 26 26 H 1.08998 * 109.47109 * 180.80254 * 3 2 1 27 27 H 1.09001 * 109.46810 * 300.80636 * 3 2 1 28 28 H 1.09001 * 109.46631 * 60.80646 * 3 2 1 29 29 H 0.97003 * 119.99933 * 180.02562 * 8 7 5 30 30 H 1.07999 * 121.04522 * 359.95139 * 16 15 13 31 31 H 1.08000 * 120.97147 * 179.72408 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.2750 -0.6783 2.3445 6 1 0.8704 0.2517 2.7159 7 6 1.0400 -1.8634 3.0337 8 7 0.5269 -1.8297 4.2421 9 14 1.4544 -3.5031 2.2404 10 1 2.8065 -3.9359 2.6756 11 1 0.4529 -4.5194 2.6522 12 1 1.4330 -3.3575 0.7627 13 6 3.1999 -1.3382 1.1652 14 8 3.5429 -2.0225 2.1096 15 6 4.0795 -1.2163 -0.0181 16 6 5.2264 -2.0096 -0.1263 17 6 6.0170 -1.8572 -1.2554 18 6 5.6230 -0.9276 -2.2079 19 17 6.5757 -0.6970 -3.6407 20 7 4.5216 -0.2180 -2.0253 21 7 3.7842 -0.3527 -0.9834 22 1 -0.3634 0.5942 0.8384 23 1 -0.3633 0.4289 -0.9339 24 1 -0.3634 -1.0232 0.0954 25 1 1.8933 -0.5138 -0.8900 26 1 3.1299 1.4425 -0.0144 27 1 1.6649 1.9605 -0.8827 28 1 1.6885 1.9521 0.8972 29 1 0.3634 -2.6562 4.7229 30 1 5.4883 -2.7183 0.6454 31 1 6.9158 -2.4412 -1.3875 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232651997.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:07 Heat of formation + Delta-G solvation = 26.572563 kcal Electronic energy + Delta-G solvation = -18888.891082 eV Core-core repulsion = 15811.530829 eV Total energy + Delta-G solvation = -3077.360253 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.48171 -40.65167 -38.01124 -37.61209 -34.75048 -34.40122 -33.44021 -32.30566 -28.34174 -27.47576 -26.02949 -25.43899 -22.96940 -21.61626 -20.07626 -18.64199 -18.41383 -17.87206 -17.21192 -16.68504 -16.15580 -15.76728 -15.50558 -15.27755 -14.88993 -14.45319 -14.29338 -13.96322 -13.42203 -13.23791 -12.99050 -12.87378 -12.67635 -12.52762 -12.27242 -12.15453 -11.91130 -11.75121 -11.39617 -10.93726 -10.86397 -10.80665 -10.53805 -9.61612 -8.45981 -6.29239 -0.84327 -0.47485 0.40610 1.19018 1.30676 1.46382 1.68726 2.29010 2.32292 2.49875 2.86933 2.99177 3.21767 3.50490 3.56771 3.72400 4.16357 4.31775 4.39589 4.58679 4.65818 4.78823 4.91992 5.01596 5.07714 5.16588 5.47586 5.51949 5.67967 5.84446 6.58016 6.72109 7.16438 7.22150 7.64870 8.60385 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.027548 B = 0.006872 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.172677 B = 4073.262952 C = 4730.345040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.119 3.881 3 C -0.131 4.131 4 N -0.436 5.436 5 C -0.327 4.327 6 H 0.079 0.921 7 C 0.044 3.956 8 N -0.902 5.902 9 Si 0.975 3.025 10 H -0.269 1.269 11 H -0.306 1.306 12 H -0.281 1.281 13 C 0.481 3.519 14 O -0.575 6.575 15 C 0.023 3.977 16 C -0.063 4.063 17 C -0.084 4.084 18 C 0.113 3.887 19 Cl 0.016 6.984 20 N -0.254 5.254 21 N -0.196 5.196 22 H 0.052 0.948 23 H 0.089 0.911 24 H 0.038 0.962 25 H 0.094 0.906 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.038 0.962 29 H 0.277 0.723 30 H 0.177 0.823 31 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.643 0.320 -15.928 19.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.017 3.983 3 C -0.189 4.189 4 N -0.155 5.155 5 C -0.455 4.455 6 H 0.096 0.904 7 C -0.162 4.162 8 N -0.538 5.538 9 Si 0.807 3.193 10 H -0.196 1.196 11 H -0.236 1.236 12 H -0.206 1.206 13 C 0.271 3.729 14 O -0.461 6.461 15 C -0.122 4.122 16 C -0.092 4.092 17 C -0.113 4.113 18 C -0.057 4.057 19 Cl 0.044 6.956 20 N -0.099 5.099 21 N -0.043 5.043 22 H 0.071 0.929 23 H 0.108 0.892 24 H 0.057 0.943 25 H 0.111 0.889 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.194 0.806 31 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 9.749 1.128 -16.001 18.771 hybrid contribution 0.881 -1.643 0.731 2.003 sum 10.630 -0.515 -15.270 18.613 Atomic orbital electron populations 1.21873 0.93701 1.01461 1.02351 1.21764 0.95197 0.94604 0.86749 1.21905 1.00858 0.94589 1.01514 1.43982 1.14896 1.45196 1.11422 1.18665 1.31679 0.94981 1.00169 0.90386 1.26074 0.92877 1.02289 0.94944 1.69725 1.42737 1.29954 1.11424 0.85203 0.76778 0.79011 0.78281 1.19609 1.23638 1.20628 1.18241 0.82235 0.85860 0.86604 1.90526 1.74318 1.43070 1.38176 1.23057 0.97150 0.96408 0.95627 1.22661 0.91230 0.96834 0.98520 1.22601 1.01738 0.96540 0.90391 1.23917 0.93933 0.95564 0.92304 1.98431 1.66852 1.96129 1.34157 1.73018 1.02899 1.19844 1.14127 1.73925 1.20008 1.13812 0.96593 0.92860 0.89244 0.94323 0.88862 0.93222 0.89645 0.94326 0.91354 0.80561 0.77186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 8.42 71.98 0.61 -4.34 16 2 C 0.12 4.69 2.57 44.99 0.12 4.80 16 3 C -0.13 -4.53 8.90 71.98 0.64 -3.89 16 4 N -0.44 -21.18 2.06 -616.30 -1.27 -22.45 16 5 C -0.33 -18.35 8.15 84.12 0.69 -17.67 16 6 H 0.08 4.66 7.88 -2.91 -0.02 4.63 16 7 C 0.04 2.55 5.06 84.97 0.43 2.98 16 8 N -0.90 -54.96 13.95 21.69 0.30 -54.65 16 9 Si 0.98 50.85 24.44 68.60 1.68 52.52 16 10 H -0.27 -14.47 6.34 99.48 0.63 -13.84 16 11 H -0.31 -15.40 7.11 99.48 0.71 -14.69 16 12 H -0.28 -14.08 7.03 99.48 0.70 -13.38 16 13 C 0.48 22.94 6.01 86.81 0.52 23.46 16 14 O -0.57 -30.80 11.47 -3.93 -0.05 -30.84 16 15 C 0.02 0.85 6.59 41.96 0.28 1.12 16 16 C -0.06 -1.78 9.73 22.77 0.22 -1.56 16 17 C -0.08 -1.68 9.99 22.51 0.22 -1.45 16 18 C 0.11 2.65 7.37 84.76 0.62 3.28 16 19 Cl 0.02 0.28 29.13 -2.72 -0.08 0.21 16 20 N -0.25 -7.62 11.50 -49.72 -0.57 -8.19 16 21 N -0.20 -6.81 5.39 -48.52 -0.26 -7.07 16 22 H 0.05 2.06 7.48 -2.39 -0.02 2.04 16 23 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.09 3.55 5.59 -2.39 -0.01 3.54 16 26 H 0.05 1.79 6.39 -2.39 -0.02 1.77 16 27 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 30 H 0.18 4.66 7.74 -2.91 -0.02 4.64 16 31 H 0.21 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -69.30 275.19 5.17 -64.12 By element: Atomic # 1 Polarization: -1.45 SS G_CDS: 1.07 Total: -0.38 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 4.35 Total: 6.73 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -1.80 Total: -92.36 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.05 Total: -30.84 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 1.68 Total: 52.52 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -0.08 Total: 0.21 kcal Total: -69.30 5.17 -64.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232651997.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.697 kcal (2) G-P(sol) polarization free energy of solvation -69.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds