Wall clock time and date at job start Mon Mar 30 2020 05:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47233 * 2 1 4 4 N 1.46497 * 109.47256 * 179.97438 * 3 2 1 5 5 C 1.36801 * 119.99917 * 262.39644 * 4 3 2 6 6 H 1.07999 * 120.00423 * 196.19571 * 5 4 3 7 7 C 1.39097 * 120.00086 * 16.19314 * 5 4 3 8 8 N 1.31337 * 119.99715 * 20.04269 * 7 5 4 9 9 Si 1.86794 * 120.00449 * 200.04054 * 7 5 4 10 10 H 1.48491 * 109.47482 * 89.99892 * 9 7 5 11 11 H 1.48506 * 109.47389 * 210.00636 * 9 7 5 12 12 H 1.48506 * 109.47011 * 329.99920 * 9 7 5 13 13 C 1.34774 * 120.00157 * 82.39578 * 4 3 2 14 14 O 1.21575 * 119.99957 * 182.43951 * 13 4 3 15 15 C 1.47938 * 119.99953 * 2.44932 * 13 4 3 16 16 C 1.39884 * 120.17239 * 172.75085 * 15 13 4 17 17 C 1.38683 * 117.90325 * 179.97438 * 16 15 13 18 18 C 1.38791 * 118.07221 * 359.97438 * 17 16 15 19 19 Cl 1.73609 * 119.97182 * 179.97438 * 18 17 16 20 20 N 1.32272 * 120.05699 * 0.02562 * 18 17 16 21 21 N 1.28352 * 122.28436 * 359.97438 * 20 18 17 22 22 H 1.09003 * 109.47157 * 180.02562 * 1 2 3 23 23 H 1.08991 * 109.47381 * 300.00379 * 1 2 3 24 24 H 1.08998 * 109.46577 * 60.00626 * 1 2 3 25 25 H 1.09004 * 109.47709 * 239.99756 * 2 1 3 26 26 H 1.09002 * 109.47445 * 119.99530 * 2 1 3 27 27 H 1.09004 * 109.46972 * 59.99305 * 3 2 1 28 28 H 1.09008 * 109.46806 * 299.99759 * 3 2 1 29 29 H 0.97004 * 119.99747 * 179.97438 * 8 7 5 30 30 H 1.07997 * 121.04545 * 359.95529 * 16 15 13 31 31 H 1.08002 * 120.95672 * 179.72564 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1885 1.5995 1.1752 6 1 5.2363 1.8605 1.1596 7 6 3.5339 1.4229 2.3897 8 7 2.4122 0.7414 2.4381 9 14 4.2500 2.1549 3.9520 10 1 3.7151 3.5264 4.1465 11 1 3.8750 1.3079 5.1127 12 1 5.7297 2.2122 3.8387 13 6 4.1794 1.2879 -1.1560 14 8 5.3943 1.2434 -1.1500 15 6 3.4413 1.1725 -2.4329 16 6 4.1348 1.1643 -3.6476 17 6 3.3961 1.0536 -4.8160 18 6 2.0156 0.9572 -4.7093 19 17 1.0427 0.8172 -6.1403 20 7 1.4406 0.9729 -3.5182 21 7 2.1165 1.0751 -2.4319 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3632 0.5137 -0.8901 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6767 1.9563 -0.8901 29 1 1.9559 0.6179 3.2852 30 1 5.2117 1.2421 -3.6747 31 1 3.8807 1.0467 -5.7812 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233035570.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:08 Heat of formation + Delta-G solvation = 26.586079 kcal Electronic energy + Delta-G solvation = -18646.513884 eV Core-core repulsion = 15569.154217 eV Total energy + Delta-G solvation = -3077.359667 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.26607 -40.17872 -37.91451 -37.37951 -34.51785 -34.19382 -33.32494 -33.00935 -27.99682 -26.97763 -25.74771 -25.39064 -22.43753 -21.79650 -19.43216 -18.79010 -18.35998 -17.86552 -16.97465 -16.57457 -15.94052 -15.60179 -15.45019 -15.28473 -14.84918 -14.32239 -13.89453 -13.70620 -13.36897 -13.11984 -12.86917 -12.66448 -12.59567 -12.38416 -12.11551 -12.06755 -11.81463 -11.49422 -11.27549 -10.89020 -10.72977 -10.65665 -10.46215 -9.70020 -8.40068 -5.97547 -0.69101 -0.34096 0.50352 1.36413 1.44494 1.56189 1.76791 2.20194 2.52771 2.69818 3.06434 3.07742 3.39199 3.66197 3.71377 3.85802 4.40181 4.51412 4.62439 4.76144 4.85418 4.90456 5.00524 5.22028 5.30016 5.35422 5.42654 5.63980 5.95348 5.99072 6.41354 7.01906 7.26914 7.38853 7.88679 8.51130 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.031464 B = 0.005780 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.686572 B = 4843.002636 C = 5587.770401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.098 4.098 3 C 0.131 3.869 4 N -0.402 5.402 5 C -0.346 4.346 6 H 0.085 0.915 7 C 0.009 3.991 8 N -0.845 5.845 9 Si 0.996 3.004 10 H -0.265 1.265 11 H -0.269 1.269 12 H -0.273 1.273 13 C 0.445 3.555 14 O -0.631 6.631 15 C 0.033 3.967 16 C -0.066 4.066 17 C -0.086 4.086 18 C 0.103 3.897 19 Cl 0.008 6.992 20 N -0.259 5.259 21 N -0.206 5.206 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.020 0.980 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.282 0.718 30 H 0.176 0.824 31 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.923 0.635 -11.360 12.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.136 4.136 3 C 0.008 3.992 4 N -0.114 5.114 5 C -0.475 4.475 6 H 0.103 0.897 7 C -0.198 4.198 8 N -0.480 5.480 9 Si 0.818 3.182 10 H -0.190 1.190 11 H -0.194 1.194 12 H -0.198 1.198 13 C 0.234 3.766 14 O -0.521 6.521 15 C -0.111 4.111 16 C -0.096 4.096 17 C -0.115 4.115 18 C -0.069 4.069 19 Cl 0.036 6.964 20 N -0.103 5.103 21 N -0.053 5.053 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.193 0.807 31 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.014 0.477 -10.413 11.568 hybrid contribution 1.482 0.177 -0.061 1.494 sum -3.532 0.654 -10.475 11.073 Atomic orbital electron populations 1.21414 0.94697 1.00804 1.00926 1.21550 0.96219 0.96263 0.99600 1.21867 0.77790 0.98763 1.00788 1.44125 1.07568 1.54161 1.05577 1.19908 0.96915 1.47324 0.83325 0.89684 1.26227 0.96689 0.94979 1.01911 1.70149 1.17287 1.31999 1.28546 0.84905 0.78543 0.78570 0.76159 1.19028 1.19418 1.19778 1.17650 0.86789 0.88521 0.83609 1.90561 1.13933 1.61104 1.86514 1.23122 0.92763 0.98701 0.96558 1.22559 1.03722 0.93471 0.89857 1.22537 0.91169 0.96032 1.01733 1.23852 0.91807 1.00021 0.91184 1.98410 1.71321 1.95627 1.31012 1.72991 1.32364 1.10027 0.94948 1.74059 1.05533 1.08991 1.16715 0.93048 0.93265 0.92871 0.96087 0.91136 0.91200 0.90235 0.90788 0.80671 0.77478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.45 9.91 71.98 0.71 -3.74 16 2 C -0.10 -4.38 5.06 30.59 0.15 -4.22 16 3 C 0.13 6.18 4.14 86.38 0.36 6.54 16 4 N -0.40 -21.33 2.64 -638.72 -1.68 -23.01 16 5 C -0.35 -19.18 9.35 84.12 0.79 -18.39 16 6 H 0.09 4.99 7.37 -2.91 -0.02 4.97 16 7 C 0.01 0.44 4.92 84.97 0.42 0.86 16 8 N -0.84 -41.61 8.43 21.69 0.18 -41.43 16 9 Si 1.00 39.80 29.60 68.60 2.03 41.83 16 10 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 11 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 12 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 13 C 0.44 22.93 7.54 86.81 0.65 23.58 16 14 O -0.63 -35.72 16.06 -3.95 -0.06 -35.78 16 15 C 0.03 1.38 6.56 41.96 0.28 1.66 16 16 C -0.07 -2.09 9.73 22.77 0.22 -1.86 16 17 C -0.09 -2.01 9.99 22.51 0.22 -1.78 16 18 C 0.10 2.82 7.37 84.76 0.62 3.44 16 19 Cl 0.01 0.17 29.13 -2.72 -0.08 0.09 16 20 N -0.26 -9.04 11.50 -49.72 -0.57 -9.61 16 21 N -0.21 -8.25 5.47 -48.52 -0.27 -8.51 16 22 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 23 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.02 0.96 6.60 -2.39 -0.02 0.94 16 26 H 0.07 3.54 5.96 -2.39 -0.01 3.53 16 27 H 0.07 3.46 6.16 -2.39 -0.01 3.45 16 28 H 0.08 3.62 5.37 -2.38 -0.01 3.61 16 29 H 0.28 12.79 8.31 -92.71 -0.77 12.02 16 30 H 0.18 5.06 7.73 -2.91 -0.02 5.04 16 31 H 0.21 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -63.39 278.69 5.15 -58.24 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 1.17 Total: 12.10 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 4.43 Total: 6.08 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -2.34 Total: -82.56 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -0.06 Total: -35.78 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -0.08 Total: 0.09 kcal Total: -63.39 5.15 -58.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233035570.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.829 kcal (2) G-P(sol) polarization free energy of solvation -63.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds