Wall clock time and date at job start Mon Mar 30 2020 05:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33641 * 126.03730 * 2 1 4 4 N 1.31778 * 114.50181 * 179.97438 * 3 2 1 5 5 C 1.29029 * 117.12461 * 0.02562 * 4 3 2 6 6 C 1.50700 * 124.91704 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.47040 * 89.97594 * 6 5 4 8 8 C 1.34785 * 119.99744 * 180.02562 * 7 6 5 9 9 O 1.21439 * 119.99762 * 359.97438 * 8 7 6 10 10 C 1.48830 * 120.00133 * 179.97438 * 8 7 6 11 11 O 1.21509 * 119.99775 * 0.02562 * 10 8 7 12 12 N 1.34768 * 120.00047 * 179.97438 * 10 8 7 13 13 C 1.36120 * 119.99938 * 180.02562 * 12 10 8 14 14 H 1.08003 * 120.00032 * 0.02562 * 13 12 10 15 15 C 1.39590 * 120.00261 * 180.02562 * 13 12 10 16 16 N 1.31015 * 119.99836 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00309 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46955 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47230 * 119.99323 * 17 15 13 20 20 H 1.48494 * 109.47142 * 239.99971 * 17 15 13 21 21 S 1.70982 * 110.16446 * 359.72487 * 5 4 3 22 22 H 1.09002 * 109.47152 * 90.00002 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.00102 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.00083 * 1 2 3 25 25 H 1.07996 * 122.75014 * 0.02562 * 3 2 1 26 26 H 1.09005 * 109.47178 * 209.97478 * 6 5 4 27 27 H 1.09001 * 109.46918 * 329.96982 * 6 5 4 28 28 H 0.96997 * 120.00590 * 0.02562 * 7 6 5 29 29 H 0.96998 * 120.00520 * 359.97438 * 12 10 8 30 30 H 0.96997 * 120.00104 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0807 0.0000 4 7 3.5844 0.8171 0.0005 5 6 3.9312 -0.4257 0.0005 6 6 5.3532 -0.9245 0.0016 7 7 5.8130 -1.0859 1.3831 8 6 7.0634 -1.5240 1.6303 9 8 7.8087 -1.7853 0.7078 10 6 7.5308 -1.6875 3.0339 11 8 6.7849 -1.4266 3.9568 12 7 8.7809 -2.1261 3.2810 13 6 9.2082 -2.2761 4.5647 14 1 8.5452 -2.0442 5.3851 15 6 10.5032 -2.7298 4.8208 16 7 11.3073 -3.0117 3.8256 17 14 11.0893 -2.9364 6.5824 18 1 9.9986 -2.5545 7.5150 19 1 11.4669 -4.3536 6.8155 20 1 12.2684 -2.0649 6.8172 21 16 2.5436 -1.4247 0.0074 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5139 25 1 1.9025 2.0875 0.0004 26 1 5.4019 -1.8846 -0.5121 27 1 5.9910 -0.2050 -0.5120 28 1 5.2176 -0.8776 2.1200 29 1 9.3761 -2.3355 2.5443 30 1 12.2071 -3.3273 4.0035 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235803891.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:52 Heat of formation + Delta-G solvation = -30.489944 kcal Electronic energy + Delta-G solvation = -17135.822700 eV Core-core repulsion = 14058.031737 eV Total energy + Delta-G solvation = -3077.790963 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.04124 -39.37764 -37.25749 -35.04202 -34.12357 -32.70306 -31.41505 -29.18921 -26.24034 -25.42677 -23.82387 -22.36610 -19.88339 -19.37315 -18.45334 -18.20536 -16.99785 -16.06449 -15.41483 -15.13272 -15.04848 -14.70554 -14.30446 -13.95252 -13.84236 -13.38935 -13.15064 -13.04236 -12.80206 -12.60904 -12.11874 -11.78450 -11.41539 -11.22104 -10.56629 -10.42531 -10.39142 -9.82365 -9.74410 -9.44012 -9.09982 -8.88365 -8.29386 -8.23971 -6.68538 -4.00521 0.39175 1.08109 1.51727 2.39599 2.53967 3.13357 3.16301 3.23034 3.45095 3.92277 4.06850 4.25384 4.61390 4.76528 4.83777 5.02905 5.12932 5.16758 5.34700 5.42066 5.57326 5.60724 5.94643 6.02876 6.59266 7.30034 7.51861 7.62814 7.82116 8.28642 8.55657 8.94227 9.29864 9.83244 10.46315 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.046228 B = 0.003427 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.544984 B = 8167.677910 C = 8448.972321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.224 4.224 3 C 0.031 3.969 4 N -0.453 5.453 5 C 0.025 3.975 6 C 0.200 3.800 7 N -0.711 5.711 8 C 0.518 3.482 9 O -0.543 6.543 10 C 0.395 3.605 11 O -0.596 6.596 12 N -0.497 5.497 13 C -0.305 4.305 14 H 0.114 0.886 15 C 0.031 3.969 16 N -0.867 5.867 17 Si 0.939 3.061 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.277 1.277 21 S 0.147 5.853 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.176 0.824 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.412 0.588 29 H 0.405 0.595 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.499 3.308 -8.404 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.346 4.346 3 C -0.121 4.121 4 N -0.167 5.167 5 C -0.252 4.252 6 C 0.073 3.927 7 N -0.367 5.367 8 C 0.302 3.698 9 O -0.419 6.419 10 C 0.179 3.821 11 O -0.485 6.485 12 N -0.131 5.131 13 C -0.435 4.435 14 H 0.131 0.869 15 C -0.176 4.176 16 N -0.505 5.505 17 Si 0.764 3.236 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.203 1.203 21 S 0.401 5.599 22 H 0.095 0.905 23 H 0.099 0.901 24 H 0.091 0.909 25 H 0.193 0.807 26 H 0.108 0.892 27 H 0.116 0.884 28 H 0.248 0.752 29 H 0.240 0.760 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.944 2.533 -8.504 19.127 hybrid contribution 0.072 0.831 0.597 1.026 sum -16.872 3.364 -7.907 18.934 Atomic orbital electron populations 1.20247 0.86635 1.03605 1.02974 1.26139 1.01852 0.95413 1.11163 1.21737 0.86783 1.00203 1.03340 1.66273 1.17845 1.18636 1.13965 1.26925 1.00795 0.91624 1.05876 1.19693 0.85914 1.01649 0.85481 1.45627 1.15233 1.68485 1.07348 1.20731 0.81160 0.76635 0.91251 1.90700 1.54436 1.50059 1.46742 1.18840 0.85059 0.90639 0.87562 1.90592 1.55077 1.58133 1.44690 1.41557 1.10731 1.51195 1.09661 1.19946 0.97719 1.41604 0.84274 0.86872 1.25601 0.95627 0.95846 1.00542 1.69490 1.08179 1.40654 1.32224 0.85660 0.78927 0.78172 0.80816 1.18686 1.20264 1.20266 1.84098 0.98125 1.10670 1.67003 0.90452 0.90106 0.90941 0.80703 0.89190 0.88370 0.75193 0.75951 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.42 36.01 0.38 -0.07 16 2 C -0.22 -2.11 6.60 -35.92 -0.24 -2.35 16 3 C 0.03 0.33 11.25 -19.19 -0.22 0.12 16 4 N -0.45 -6.20 10.54 -11.86 -0.13 -6.32 16 5 C 0.03 0.33 6.76 -13.46 -0.09 0.24 16 6 C 0.20 2.88 6.25 -5.20 -0.03 2.84 16 7 N -0.71 -12.54 5.54 -62.11 -0.34 -12.88 16 8 C 0.52 11.25 7.87 -11.87 -0.09 11.15 16 9 O -0.54 -12.52 16.47 5.42 0.09 -12.43 16 10 C 0.39 9.98 7.82 -11.88 -0.09 9.89 16 11 O -0.60 -16.12 16.03 5.36 0.09 -16.03 16 12 N -0.50 -13.29 5.25 -11.59 -0.06 -13.35 16 13 C -0.30 -8.39 9.67 -15.14 -0.15 -8.54 16 14 H 0.11 3.19 7.15 -52.48 -0.38 2.81 16 15 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 16 N -0.87 -23.16 13.03 55.53 0.72 -22.44 16 17 Si 0.94 20.02 29.56 -169.99 -5.02 15.00 16 18 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 19 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 21 S 0.15 1.54 23.18 -107.50 -2.49 -0.95 16 22 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 26 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 28 H 0.41 7.18 7.92 -40.82 -0.32 6.85 16 29 H 0.41 10.86 7.35 -40.82 -0.30 10.56 16 30 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 LS Contribution 292.54 15.07 4.41 4.41 Total: -1.00 -31.45 292.54 -6.04 -37.49 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -2.67 Total: 13.51 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: -0.63 Total: 14.00 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.19 Total: -54.99 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: 0.18 Total: -28.46 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.49 Total: -0.95 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.45 -6.04 -37.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235803891.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.000 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds