Wall clock time and date at job start Mon Mar 30 2020 05:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33641 * 126.03730 * 2 1 4 4 N 1.31778 * 114.50181 * 179.97438 * 3 2 1 5 5 C 1.29029 * 117.12461 * 0.02562 * 4 3 2 6 6 C 1.50700 * 124.91704 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.47040 * 89.97594 * 6 5 4 8 8 C 1.34785 * 119.99744 * 180.02562 * 7 6 5 9 9 O 1.21439 * 119.99762 * 359.97438 * 8 7 6 10 10 C 1.48830 * 120.00133 * 179.97438 * 8 7 6 11 11 O 1.21509 * 119.99775 * 0.02562 * 10 8 7 12 12 N 1.34768 * 120.00047 * 179.97438 * 10 8 7 13 13 C 1.36120 * 119.99938 * 180.02562 * 12 10 8 14 14 H 1.08003 * 120.00032 * 0.02562 * 13 12 10 15 15 C 1.39590 * 120.00261 * 180.02562 * 13 12 10 16 16 N 1.31015 * 119.99836 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00309 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46955 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47230 * 119.99323 * 17 15 13 20 20 H 1.48494 * 109.47142 * 239.99971 * 17 15 13 21 21 S 1.70982 * 110.16446 * 359.72487 * 5 4 3 22 22 H 1.09002 * 109.47152 * 90.00002 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.00102 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.00083 * 1 2 3 25 25 H 1.07996 * 122.75014 * 0.02562 * 3 2 1 26 26 H 1.09005 * 109.47178 * 209.97478 * 6 5 4 27 27 H 1.09001 * 109.46918 * 329.96982 * 6 5 4 28 28 H 0.96997 * 120.00590 * 0.02562 * 7 6 5 29 29 H 0.96998 * 120.00520 * 359.97438 * 12 10 8 30 30 H 0.96997 * 120.00104 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0807 0.0000 4 7 3.5844 0.8171 0.0005 5 6 3.9312 -0.4257 0.0005 6 6 5.3532 -0.9245 0.0016 7 7 5.8130 -1.0859 1.3831 8 6 7.0634 -1.5240 1.6303 9 8 7.8087 -1.7853 0.7078 10 6 7.5308 -1.6875 3.0339 11 8 6.7849 -1.4266 3.9568 12 7 8.7809 -2.1261 3.2810 13 6 9.2082 -2.2761 4.5647 14 1 8.5452 -2.0442 5.3851 15 6 10.5032 -2.7298 4.8208 16 7 11.3073 -3.0117 3.8256 17 14 11.0893 -2.9364 6.5824 18 1 9.9986 -2.5545 7.5150 19 1 11.4669 -4.3536 6.8155 20 1 12.2684 -2.0649 6.8172 21 16 2.5436 -1.4247 0.0074 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5139 25 1 1.9025 2.0875 0.0004 26 1 5.4019 -1.8846 -0.5121 27 1 5.9910 -0.2050 -0.5120 28 1 5.2176 -0.8776 2.1200 29 1 9.3761 -2.3355 2.5443 30 1 12.2071 -3.3273 4.0035 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235803891.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:52 Heat of formation + Delta-G solvation = -54.951270 kcal Electronic energy + Delta-G solvation = -17136.883422 eV Core-core repulsion = 14058.031737 eV Total energy + Delta-G solvation = -3078.851686 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.062 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.41274 -40.71882 -39.16918 -36.67938 -35.92651 -33.65030 -33.38310 -30.32938 -27.90788 -26.62749 -24.96847 -23.90510 -21.38786 -20.65309 -20.29559 -19.32599 -18.61845 -17.77079 -16.92288 -16.72749 -16.41740 -15.99706 -15.69897 -15.44202 -15.18802 -14.74982 -14.41581 -14.12358 -13.71694 -13.67381 -13.60173 -13.36378 -12.97464 -12.58397 -12.36768 -12.12360 -12.08082 -11.68535 -10.75221 -10.39911 -10.35618 -10.28296 -10.24984 -9.83699 -8.66997 -6.11665 -0.48710 0.24602 0.54861 0.67231 1.40760 1.45980 1.51688 1.61080 1.99085 2.30551 2.34078 2.95452 3.14163 3.23602 3.84688 3.98410 4.01208 4.23375 4.30773 4.44523 4.73809 4.87813 5.01692 5.07992 5.24397 5.25055 5.66281 6.05961 6.32336 6.66131 6.74817 6.94917 7.25767 7.78316 8.48968 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.046228 B = 0.003427 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.544984 B = 8167.677910 C = 8448.972321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.205 4.205 3 C 0.008 3.992 4 N -0.477 5.477 5 C -0.007 4.007 6 C 0.201 3.799 7 N -0.692 5.692 8 C 0.526 3.474 9 O -0.558 6.558 10 C 0.389 3.611 11 O -0.618 6.618 12 N -0.507 5.507 13 C -0.344 4.344 14 H 0.099 0.901 15 C -0.004 4.004 16 N -0.894 5.894 17 Si 1.011 2.989 18 H -0.264 1.264 19 H -0.265 1.265 20 H -0.266 1.266 21 S 0.173 5.827 22 H 0.095 0.905 23 H 0.098 0.902 24 H 0.081 0.919 25 H 0.198 0.802 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.414 0.586 29 H 0.402 0.598 30 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.068 3.297 -8.350 21.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.327 4.327 3 C -0.143 4.143 4 N -0.193 5.193 5 C -0.283 4.283 6 C 0.075 3.925 7 N -0.346 5.346 8 C 0.309 3.691 9 O -0.437 6.437 10 C 0.174 3.826 11 O -0.508 6.508 12 N -0.141 5.141 13 C -0.474 4.474 14 H 0.117 0.883 15 C -0.209 4.209 16 N -0.531 5.531 17 Si 0.831 3.169 18 H -0.188 1.188 19 H -0.190 1.190 20 H -0.191 1.191 21 S 0.427 5.573 22 H 0.113 0.887 23 H 0.116 0.884 24 H 0.099 0.901 25 H 0.214 0.786 26 H 0.123 0.877 27 H 0.111 0.889 28 H 0.250 0.750 29 H 0.237 0.763 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.533 2.530 -8.479 20.537 hybrid contribution 0.371 0.875 0.493 1.071 sum -18.162 3.404 -7.986 20.130 Atomic orbital electron populations 1.20454 0.83874 1.04888 1.04462 1.26662 1.03481 0.94351 1.08166 1.22107 0.86025 1.01738 1.04434 1.66234 1.19707 1.19301 1.14046 1.26562 1.00757 0.92331 1.08695 1.19794 0.87201 1.02447 0.83080 1.45563 1.13566 1.66271 1.09226 1.20025 0.82399 0.77344 0.89351 1.90694 1.55233 1.51268 1.46472 1.19485 0.84512 0.89472 0.89108 1.90557 1.55502 1.58688 1.46005 1.41642 1.11250 1.51776 1.09455 1.20028 0.98766 1.44292 0.84330 0.88321 1.26552 0.94900 0.94395 1.05003 1.69550 1.08778 1.40486 1.34322 0.84634 0.78355 0.78728 0.75156 1.18791 1.18950 1.19095 1.83970 0.96863 1.10418 1.66031 0.88679 0.88391 0.90055 0.78562 0.87713 0.88893 0.74968 0.76340 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.42 71.24 0.74 0.10 16 2 C -0.20 -3.33 6.60 24.64 0.16 -3.17 16 3 C 0.01 0.15 11.25 83.66 0.94 1.09 16 4 N -0.48 -12.67 10.54 -191.45 -2.02 -14.69 16 5 C -0.01 -0.19 6.76 88.52 0.60 0.41 16 6 C 0.20 5.72 6.25 85.63 0.54 6.25 16 7 N -0.69 -24.44 5.54 -468.74 -2.60 -27.03 16 8 C 0.53 23.15 7.87 87.08 0.69 23.83 16 9 O -0.56 -26.04 16.47 -3.52 -0.06 -26.10 16 10 C 0.39 20.18 7.82 87.08 0.68 20.87 16 11 O -0.62 -34.12 16.03 -3.74 -0.06 -34.18 16 12 N -0.51 -27.95 5.25 -308.87 -1.62 -29.57 16 13 C -0.34 -19.42 9.67 84.35 0.82 -18.61 16 14 H 0.10 5.74 7.15 -2.91 -0.02 5.72 16 15 C 0.00 -0.21 5.51 85.14 0.47 0.26 16 16 N -0.89 -47.89 13.03 21.77 0.28 -47.61 16 17 Si 1.01 40.71 29.56 68.60 2.03 42.73 16 18 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 19 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 20 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 21 S 0.17 3.33 23.18 -56.49 -1.31 2.02 16 22 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 23 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 25 H 0.20 2.81 8.06 -2.91 -0.02 2.79 16 26 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 27 H 0.09 2.75 8.14 -2.39 -0.02 2.74 16 28 H 0.41 14.43 7.92 -92.71 -0.73 13.69 16 29 H 0.40 22.24 7.35 -92.71 -0.68 21.56 16 30 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 Total: -1.00 -68.12 292.54 0.07 -68.05 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: -0.21 Total: 35.34 kcal Atomic # 6 Polarization: 25.41 SS G_CDS: 5.63 Total: 31.04 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -5.95 Total: -118.90 kcal Atomic # 8 Polarization: -60.16 SS G_CDS: -0.12 Total: -60.28 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -1.31 Total: 2.02 kcal Total: -68.12 0.07 -68.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235803891.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.101 kcal (2) G-P(sol) polarization free energy of solvation -68.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds