Wall clock time and date at job start Mon Mar 30 2020 05:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99615 * 2 1 4 4 H 1.48500 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47577 * 299.99714 * 3 2 1 6 6 H 1.48507 * 109.47431 * 59.99789 * 3 2 1 7 7 C 1.38798 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99767 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99928 * 0.02562 * 7 2 1 10 10 C 1.80996 * 99.99936 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47213 * 179.97438 * 10 9 7 12 12 N 1.30944 * 126.44126 * 90.00422 * 11 10 9 13 13 C 1.35229 * 105.57828 * 180.02562 * 12 11 10 14 14 C 1.48446 * 126.40702 * 179.97438 * 13 12 11 15 15 O 1.21492 * 119.99949 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00245 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00164 * 180.02562 * 16 14 13 18 18 C 1.53008 * 117.49694 * 223.74649 * 17 16 14 19 19 C 1.52999 * 117.50095 * 155.08745 * 17 16 14 20 20 N 1.30666 * 107.18686 * 0.02562 * 13 12 11 21 21 O 1.21293 * 110.11134 * 359.97438 * 20 13 12 22 22 H 0.97007 * 120.00329 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47191 * 60.00337 * 10 9 7 24 24 H 1.08997 * 109.47801 * 300.00710 * 10 9 7 25 25 H 0.97001 * 119.99472 * 359.97438 * 16 14 13 26 26 H 1.08998 * 115.55356 * 9.41048 * 17 16 14 27 27 H 1.09004 * 117.49695 * 359.97438 * 18 17 16 28 28 H 1.08998 * 117.49666 * 145.01925 * 18 17 16 29 29 H 1.08992 * 117.50022 * 214.97936 * 19 17 16 30 30 H 1.09005 * 117.49519 * 359.96983 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8913 2.3966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3026 0.0012 12 7 1.7146 -6.0314 -1.0519 13 6 1.2711 -7.2145 -0.5698 14 6 0.8323 -8.3840 -1.3719 15 8 0.8518 -8.3300 -2.5854 16 7 0.4114 -9.5053 -0.7539 17 6 -0.0210 -10.6597 -1.5455 18 6 -1.2947 -11.3827 -1.1027 19 6 0.0716 -12.0396 -0.8912 20 7 1.2999 -7.1352 0.7342 21 8 1.7084 -6.0458 1.0769 22 1 -0.4851 0.8401 -0.0004 23 1 3.1245 -3.7312 0.8906 24 1 3.1247 -3.7312 -0.8893 25 1 0.3956 -9.5482 0.2150 26 1 0.1752 -10.5959 -2.6157 27 1 -1.8106 -10.9996 -0.2222 28 1 -1.9361 -11.7949 -1.8817 29 1 0.3286 -12.8837 -1.5311 30 1 0.4548 -12.0886 0.1281 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236403820.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:57 Heat of formation + Delta-G solvation = 60.812305 kcal Electronic energy + Delta-G solvation = -16982.323008 eV Core-core repulsion = 13908.491208 eV Total energy + Delta-G solvation = -3073.831800 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.062 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.54461 -40.00073 -37.43239 -35.60293 -33.81635 -32.71963 -32.57179 -28.67170 -25.97750 -25.66671 -23.14113 -22.79591 -22.16500 -20.93394 -18.55055 -18.18289 -17.56585 -17.15726 -16.56313 -15.12909 -14.94776 -14.92246 -14.75499 -14.56423 -14.24956 -13.35210 -13.10750 -12.89339 -12.23799 -12.03924 -11.90026 -11.60252 -11.19177 -11.15514 -11.06599 -10.99290 -10.92389 -10.57212 -10.37780 -9.62891 -9.22107 -9.18071 -8.60771 -6.78314 -6.38767 -4.14054 0.82742 1.63807 2.31415 2.75726 2.90568 3.15222 3.16326 3.24200 3.34601 3.54125 3.70723 3.96476 4.06778 4.34238 4.53565 4.59180 4.88736 4.99035 5.19160 5.22706 5.36502 5.50967 5.55188 5.61398 5.66950 5.96511 6.01466 6.05921 6.97829 7.46214 7.71086 8.09163 8.20257 9.07444 10.69274 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.054557 B = 0.003253 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.105875 B = 8605.891453 C = 8694.667889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.926 3.074 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.526 4.526 8 H 0.082 0.918 9 S -0.080 6.080 10 C -0.046 4.046 11 C 0.236 3.764 12 N -0.439 5.439 13 C 0.129 3.871 14 C 0.621 3.379 15 O -0.495 6.495 16 N -0.688 5.688 17 C 0.079 3.921 18 C -0.190 4.190 19 C -0.186 4.186 20 N -0.360 5.360 21 O 0.098 5.902 22 H 0.271 0.729 23 H 0.108 0.892 24 H 0.116 0.884 25 H 0.410 0.590 26 H 0.143 0.857 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.581 -18.681 1.690 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.136 4.136 3 Si 0.752 3.248 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.674 4.674 8 H 0.100 0.900 9 S 0.146 5.854 10 C -0.194 4.194 11 C 0.016 3.984 12 N -0.173 5.173 13 C -0.145 4.145 14 C 0.403 3.597 15 O -0.365 6.365 16 N -0.340 5.340 17 C -0.027 4.027 18 C -0.229 4.229 19 C -0.224 4.224 20 N -0.068 5.068 21 O 0.031 5.969 22 H 0.080 0.920 23 H 0.126 0.874 24 H 0.134 0.866 25 H 0.245 0.755 26 H 0.161 0.839 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.040 -19.515 0.793 19.531 hybrid contribution 1.730 1.423 0.638 2.329 sum 1.770 -18.092 1.431 18.234 Atomic orbital electron populations 1.70004 1.06047 1.27809 1.46284 1.25038 0.95138 0.99297 0.94082 0.86000 0.79603 0.81230 0.78004 1.19356 1.20433 1.20449 1.22742 0.94922 0.89874 1.59853 0.89979 1.85255 1.04836 0.98352 1.96984 1.22091 1.04683 0.85224 1.07444 1.28428 0.93705 0.97045 0.79218 1.72114 1.16610 1.00790 1.27812 1.25345 1.04630 0.96430 0.88142 1.16216 0.77379 0.80065 0.86047 1.90836 1.52183 1.81121 1.12337 1.45060 1.65845 1.12634 1.10438 1.21671 1.00760 0.83273 0.96952 1.23483 0.91375 1.03687 1.04323 1.23426 1.00493 0.95758 1.02767 1.74804 1.16018 1.01264 1.14726 1.85280 1.58075 1.17518 1.36016 0.91952 0.87420 0.86607 0.75463 0.83927 0.88189 0.87581 0.87516 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.70 13.22 55.49 0.73 -23.97 16 2 C 0.07 1.99 5.49 -17.43 -0.10 1.90 16 3 Si 0.93 20.35 29.55 -169.99 -5.02 15.32 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.53 -13.87 9.50 30.94 0.29 -13.58 16 8 H 0.08 2.04 7.80 -52.49 -0.41 1.63 16 9 S -0.08 -1.96 21.42 -107.50 -2.30 -4.26 16 10 C -0.05 -0.85 6.30 36.01 0.23 -0.62 16 11 C 0.24 4.26 7.75 -13.00 -0.10 4.16 16 12 N -0.44 -8.51 11.57 -9.93 -0.11 -8.62 16 13 C 0.13 2.21 8.01 -156.18 -1.25 0.96 16 14 C 0.62 9.74 7.85 -12.06 -0.09 9.64 16 15 O -0.49 -9.18 16.67 5.37 0.09 -9.09 16 16 N -0.69 -7.80 5.56 -54.56 -0.30 -8.11 16 17 C 0.08 0.73 6.43 -67.93 -0.44 0.29 16 18 C -0.19 -1.33 10.46 -26.69 -0.28 -1.61 16 19 C -0.19 -1.18 10.46 -26.69 -0.28 -1.46 16 20 N -0.36 -5.74 11.89 30.93 0.37 -5.37 16 21 O 0.10 1.62 11.29 17.99 0.20 1.83 16 22 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 23 H 0.11 1.72 8.14 -51.91 -0.42 1.30 16 24 H 0.12 2.05 8.14 -51.92 -0.42 1.62 16 25 H 0.41 3.92 8.56 -40.82 -0.35 3.57 16 26 H 0.14 1.43 7.40 -51.93 -0.38 1.05 16 27 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 295.68 15.07 4.46 4.46 Total: -1.00 -31.30 295.68 -6.73 -38.02 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -2.81 Total: 0.10 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -2.02 Total: -0.31 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.68 Total: -46.07 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.29 Total: -7.26 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: -1.96 SS G_CDS: -2.30 Total: -4.26 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.30 -6.73 -38.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236403820.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.837 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds