Wall clock time and date at job start Mon Mar 30 2020 05:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99615 * 2 1 4 4 H 1.48500 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47577 * 299.99714 * 3 2 1 6 6 H 1.48507 * 109.47431 * 59.99789 * 3 2 1 7 7 C 1.38798 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99767 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99928 * 0.02562 * 7 2 1 10 10 C 1.80996 * 99.99936 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47213 * 179.97438 * 10 9 7 12 12 N 1.30944 * 126.44126 * 90.00422 * 11 10 9 13 13 C 1.35229 * 105.57828 * 180.02562 * 12 11 10 14 14 C 1.48446 * 126.40702 * 179.97438 * 13 12 11 15 15 O 1.21492 * 119.99949 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00245 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00164 * 180.02562 * 16 14 13 18 18 C 1.53008 * 117.49694 * 223.74649 * 17 16 14 19 19 C 1.52999 * 117.50095 * 155.08745 * 17 16 14 20 20 N 1.30666 * 107.18686 * 0.02562 * 13 12 11 21 21 O 1.21293 * 110.11134 * 359.97438 * 20 13 12 22 22 H 0.97007 * 120.00329 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47191 * 60.00337 * 10 9 7 24 24 H 1.08997 * 109.47801 * 300.00710 * 10 9 7 25 25 H 0.97001 * 119.99472 * 359.97438 * 16 14 13 26 26 H 1.08998 * 115.55356 * 9.41048 * 17 16 14 27 27 H 1.09004 * 117.49695 * 359.97438 * 18 17 16 28 28 H 1.08998 * 117.49666 * 145.01925 * 18 17 16 29 29 H 1.08992 * 117.50022 * 214.97936 * 19 17 16 30 30 H 1.09005 * 117.49519 * 359.96983 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8913 2.3966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3026 0.0012 12 7 1.7146 -6.0314 -1.0519 13 6 1.2711 -7.2145 -0.5698 14 6 0.8323 -8.3840 -1.3719 15 8 0.8518 -8.3300 -2.5854 16 7 0.4114 -9.5053 -0.7539 17 6 -0.0210 -10.6597 -1.5455 18 6 -1.2947 -11.3827 -1.1027 19 6 0.0716 -12.0396 -0.8912 20 7 1.2999 -7.1352 0.7342 21 8 1.7084 -6.0458 1.0769 22 1 -0.4851 0.8401 -0.0004 23 1 3.1245 -3.7312 0.8906 24 1 3.1247 -3.7312 -0.8893 25 1 0.3956 -9.5482 0.2150 26 1 0.1752 -10.5959 -2.6157 27 1 -1.8106 -10.9996 -0.2222 28 1 -1.9361 -11.7949 -1.8817 29 1 0.3286 -12.8837 -1.5311 30 1 0.4548 -12.0886 0.1281 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236403820.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:56 Heat of formation + Delta-G solvation = 37.576829 kcal Electronic energy + Delta-G solvation = -16983.330574 eV Core-core repulsion = 13908.491208 eV Total energy + Delta-G solvation = -3074.839366 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.062 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.92813 -41.11206 -38.27137 -37.01166 -35.09374 -34.60202 -33.80987 -30.14687 -27.69151 -27.21766 -24.50164 -23.32295 -23.13756 -22.03857 -20.13031 -19.56770 -19.16971 -18.33446 -17.60249 -16.88728 -16.43618 -16.27143 -15.90085 -15.83276 -15.45186 -14.84766 -14.57761 -13.82467 -13.67653 -13.25907 -13.13764 -12.90761 -12.79334 -12.63752 -12.44631 -12.43419 -11.99104 -11.86105 -11.50765 -11.24679 -11.16465 -10.43786 -10.03271 -8.76078 -8.38303 -6.17844 -0.54063 0.20390 1.21344 1.27726 1.43752 1.44974 1.55623 1.61721 1.77928 2.22609 2.47350 2.68335 2.89513 2.99342 3.24113 3.63103 3.67812 3.97937 3.99880 4.08772 4.17238 4.52698 4.55685 4.61662 4.74113 4.98507 5.17786 5.21324 5.44531 5.96251 6.19922 6.59444 6.73341 7.05247 8.71370 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.054557 B = 0.003253 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.105875 B = 8605.891453 C = 8694.667889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.017 3.983 3 Si 0.999 3.001 4 H -0.255 1.255 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.094 0.906 9 S -0.150 6.150 10 C -0.021 4.021 11 C 0.237 3.763 12 N -0.467 5.467 13 C 0.122 3.878 14 C 0.617 3.383 15 O -0.534 6.534 16 N -0.665 5.665 17 C 0.041 3.959 18 C -0.180 4.180 19 C -0.161 4.161 20 N -0.343 5.343 21 O 0.104 5.896 22 H 0.272 0.728 23 H 0.138 0.862 24 H 0.126 0.874 25 H 0.419 0.581 26 H 0.130 0.870 27 H 0.103 0.897 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.550 -19.765 2.533 20.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.178 1.178 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.682 4.682 8 H 0.112 0.888 9 S 0.076 5.924 10 C -0.170 4.170 11 C 0.017 3.983 12 N -0.201 5.201 13 C -0.152 4.152 14 C 0.399 3.601 15 O -0.407 6.407 16 N -0.317 5.317 17 C -0.063 4.063 18 C -0.218 4.218 19 C -0.199 4.199 20 N -0.050 5.050 21 O 0.037 5.963 22 H 0.081 0.919 23 H 0.156 0.844 24 H 0.144 0.856 25 H 0.257 0.743 26 H 0.147 0.853 27 H 0.122 0.878 28 H 0.136 0.864 29 H 0.142 0.858 30 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.001 -20.654 1.679 20.747 hybrid contribution 1.406 1.569 0.410 2.146 sum 2.407 -19.086 2.088 19.350 Atomic orbital electron populations 1.70147 1.07891 1.28778 1.47818 1.26083 0.95957 1.03226 0.93561 0.84888 0.78798 0.76305 0.77905 1.17807 1.20363 1.19963 1.23131 0.95553 0.90390 1.59107 0.88820 1.85312 1.09420 1.00409 1.97218 1.21914 1.02137 0.83546 1.09431 1.28207 0.93882 0.96892 0.79346 1.72091 1.17293 1.01946 1.28812 1.25669 1.04551 0.96503 0.88483 1.16234 0.77713 0.80622 0.85545 1.90812 1.54448 1.81791 1.13682 1.45009 1.63778 1.11840 1.11037 1.21902 1.03878 0.83939 0.96577 1.23580 0.91282 1.02376 1.04563 1.23545 0.99278 0.93856 1.03218 1.74784 1.15276 1.00871 1.14094 1.85281 1.57875 1.17591 1.35561 0.91865 0.84438 0.85606 0.74338 0.85267 0.87812 0.86367 0.85803 0.87115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.60 13.22 21.65 0.29 -52.31 16 2 C 0.02 0.91 5.49 84.86 0.47 1.37 16 3 Si 1.00 41.26 29.55 68.60 2.03 43.29 16 4 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.53 -27.97 9.50 67.95 0.65 -27.32 16 8 H 0.09 4.51 7.80 -2.91 -0.02 4.49 16 9 S -0.15 -7.41 21.42 -56.49 -1.21 -8.62 16 10 C -0.02 -0.77 6.30 71.24 0.45 -0.32 16 11 C 0.24 8.38 7.75 88.36 0.68 9.06 16 12 N -0.47 -18.04 11.57 -302.76 -3.50 -21.54 16 13 C 0.12 4.17 8.01 137.33 1.10 5.27 16 14 C 0.62 19.37 7.85 86.97 0.68 20.06 16 15 O -0.53 -20.27 16.67 -3.69 -0.06 -20.33 16 16 N -0.67 -14.48 5.56 -444.82 -2.47 -16.96 16 17 C 0.04 0.71 6.43 44.99 0.29 1.00 16 18 C -0.18 -2.10 10.46 30.62 0.32 -1.78 16 19 C -0.16 -1.60 10.46 30.62 0.32 -1.28 16 20 N -0.34 -10.59 11.89 -59.35 -0.71 -11.29 16 21 O 0.10 3.34 11.29 74.43 0.84 4.18 16 22 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 23 H 0.14 4.10 8.14 -2.39 -0.02 4.08 16 24 H 0.13 4.29 8.14 -2.40 -0.02 4.27 16 25 H 0.42 7.36 8.56 -92.71 -0.79 6.56 16 26 H 0.13 2.60 7.40 -2.39 -0.02 2.59 16 27 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -68.29 295.68 0.56 -67.74 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.40 Total: 9.79 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 4.96 Total: 6.06 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -6.40 Total: -102.11 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.78 Total: -16.15 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 16 Polarization: -7.41 SS G_CDS: -1.21 Total: -8.62 kcal Total: -68.29 0.56 -67.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236403820.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.315 kcal (2) G-P(sol) polarization free energy of solvation -68.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds