Wall clock time and date at job start Mon Mar 30 2020 04:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36837 * 121.76051 * 2 1 4 4 N 1.35621 * 128.45828 * 0.02562 * 3 2 1 5 5 C 1.29904 * 121.97646 * 180.02562 * 4 3 2 6 6 N 1.35977 * 121.98288 * 359.95078 * 5 4 3 7 7 C 1.37180 * 120.18238 * 180.02562 * 6 5 4 8 8 H 1.08003 * 120.00071 * 151.28359 * 7 6 5 9 9 C 1.39089 * 120.00065 * 331.28487 * 7 6 5 10 10 N 1.31240 * 120.00035 * 342.73407 * 9 7 6 11 11 Si 1.86799 * 120.00277 * 162.73752 * 9 7 6 12 12 H 1.48505 * 109.46977 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47197 * 119.99830 * 11 9 7 14 14 H 1.48503 * 109.47051 * 240.00070 * 11 9 7 15 15 C 1.34931 * 119.63802 * 0.02932 * 6 5 4 16 16 O 1.22023 * 120.65584 * 179.97438 * 15 6 5 17 17 C 1.37946 * 113.25617 * 179.97438 * 3 2 1 18 18 S 1.75957 * 109.42921 * 0.24805 * 17 3 2 19 19 C 1.32558 * 121.75705 * 179.97438 * 2 1 3 20 20 S 1.71201 * 125.01493 * 0.02562 * 19 2 1 21 21 H 1.09006 * 109.46947 * 89.99543 * 1 2 3 22 22 H 1.09002 * 109.47487 * 209.99740 * 1 2 3 23 23 H 1.08997 * 109.47025 * 330.00192 * 1 2 3 24 24 H 1.07994 * 119.01048 * 179.97438 * 5 4 3 25 25 H 0.97003 * 120.00387 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1852 1.1635 0.0000 4 7 1.7263 2.4396 0.0005 5 6 2.5304 3.4599 -0.0001 6 7 3.8820 3.3117 -0.0002 7 6 4.6969 4.4152 -0.0003 8 1 5.6776 4.3624 0.4491 9 6 4.2601 5.6022 -0.5790 10 7 3.2432 5.5925 -1.4085 11 14 5.1210 7.2102 -0.1756 12 1 6.2297 6.9523 0.7781 13 1 5.6685 7.8046 -1.4214 14 1 4.1494 8.1517 0.4369 15 6 4.4174 2.0731 -0.0003 16 8 5.6278 1.9186 -0.0009 17 6 3.5495 0.9595 0.0006 18 16 3.8830 -0.7682 -0.0061 19 6 2.1626 -1.1271 0.0005 20 16 1.4874 -2.7004 0.0006 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 2.1128 4.4559 -0.0001 25 1 2.9383 6.4203 -1.8118 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238527502.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:16 Heat of formation + Delta-G solvation = 40.244375 kcal Electronic energy + Delta-G solvation = -15916.740492 eV Core-core repulsion = 13148.936576 eV Total energy + Delta-G solvation = -2767.803916 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 269.003 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.39527 -39.53038 -36.54946 -34.91138 -32.33402 -30.93194 -28.47534 -27.01834 -24.94200 -23.84656 -21.96228 -19.61051 -18.70125 -17.99208 -17.04592 -16.31026 -16.14558 -15.79008 -15.00047 -14.71297 -14.29890 -13.93142 -13.45890 -12.57394 -12.48138 -12.45313 -12.10852 -11.74889 -11.61235 -11.47072 -11.07329 -10.87503 -10.48931 -9.64289 -9.53433 -9.50920 -9.38988 -8.44185 -7.53560 -7.46882 -7.07145 -5.08467 0.39073 1.16682 1.28911 1.85455 2.01964 2.52639 2.66858 2.69596 2.75331 2.84495 3.36240 3.77053 3.90187 4.43574 4.55865 4.84405 5.33445 5.35088 5.39292 5.69527 6.01687 6.20835 6.52732 6.61427 6.90057 7.42889 7.71034 8.07560 8.46777 8.76375 9.54391 Molecular weight = 269.00amu Principal moments of inertia in cm(-1) A = 0.041476 B = 0.005871 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.930600 B = 4768.289348 C = 5350.154362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.421 5.421 3 C 0.338 3.662 4 N -0.553 5.553 5 C 0.370 3.630 6 N -0.326 5.326 7 C -0.319 4.319 8 H 0.131 0.869 9 C 0.047 3.953 10 N -0.827 5.827 11 Si 0.952 3.048 12 H -0.256 1.256 13 H -0.269 1.269 14 H -0.265 1.265 15 C 0.530 3.470 16 O -0.547 6.547 17 C -0.389 4.389 18 S 0.250 5.750 19 C 0.236 3.764 20 S -0.551 6.551 21 H 0.084 0.916 22 H 0.105 0.895 23 H 0.099 0.901 24 H 0.217 0.783 25 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.692 1.794 2.165 4.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.111 5.111 3 C 0.103 3.897 4 N -0.283 5.283 5 C 0.089 3.911 6 N -0.022 5.022 7 C -0.449 4.449 8 H 0.148 0.852 9 C -0.167 4.167 10 N -0.457 5.457 11 Si 0.774 3.226 12 H -0.179 1.179 13 H -0.193 1.193 14 H -0.190 1.190 15 C 0.329 3.671 16 O -0.428 6.428 17 C -0.518 4.518 18 S 0.494 5.506 19 C -0.128 4.128 20 S -0.418 6.418 21 H 0.103 0.897 22 H 0.124 0.876 23 H 0.118 0.882 24 H 0.233 0.767 25 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.231 0.135 2.008 3.807 hybrid contribution 0.108 2.293 -0.233 2.308 sum -3.123 2.429 1.775 4.336 Atomic orbital electron populations 1.22427 0.74544 1.05970 1.04935 1.43635 1.09742 1.02346 1.55411 1.18196 0.86282 0.87534 0.97642 1.67754 1.35999 0.94392 1.30172 1.24826 0.79358 0.97794 0.89118 1.42840 1.07377 1.07691 1.44341 1.20527 1.01992 0.85562 1.36806 0.85180 1.25901 0.96777 1.01625 0.92390 1.69697 1.24197 1.31108 1.20699 0.85430 0.79673 0.77827 0.79631 1.17891 1.19343 1.18987 1.15728 0.88086 0.81787 0.81516 1.90841 1.13635 1.84832 1.53513 1.23838 0.95803 1.00549 1.31652 1.85178 0.97792 0.94885 1.72766 1.27640 0.99411 0.94556 0.91146 1.92791 1.77369 1.02519 1.69157 0.89711 0.87627 0.88249 0.76704 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.90 10.38 59.85 0.62 1.53 15 2 N -0.42 -7.50 2.98 -124.00 -0.37 -7.87 15 3 C 0.34 6.71 7.49 -154.69 -1.16 5.55 15 4 N -0.55 -10.82 10.10 -13.49 -0.14 -10.96 15 5 C 0.37 7.53 10.30 -90.01 -0.93 6.60 15 6 N -0.33 -7.38 2.74 -65.76 -0.18 -7.56 15 7 C -0.32 -7.11 9.14 -14.84 -0.14 -7.24 15 8 H 0.13 2.95 7.60 -52.48 -0.40 2.55 15 9 C 0.05 0.93 5.01 -17.49 -0.09 0.85 15 10 N -0.83 -16.98 11.18 55.50 0.62 -16.36 15 11 Si 0.95 15.40 29.59 -169.99 -5.03 10.37 15 12 H -0.26 -4.18 7.11 56.52 0.40 -3.77 15 13 H -0.27 -4.41 7.11 56.52 0.40 -4.01 15 14 H -0.27 -4.11 7.11 56.52 0.40 -3.71 15 15 C 0.53 12.61 7.41 -15.07 -0.11 12.50 15 16 O -0.55 -14.26 16.97 4.90 0.08 -14.17 15 17 C -0.39 -8.32 6.44 -38.57 -0.25 -8.57 15 18 S 0.25 4.71 23.32 -107.50 -2.51 2.21 15 19 C 0.24 4.42 7.39 53.08 0.39 4.81 15 20 S -0.55 -10.84 29.65 -107.50 -3.19 -14.02 15 21 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.11 1.41 7.09 -51.93 -0.37 1.04 15 23 H 0.10 1.25 7.89 -51.93 -0.41 0.84 15 24 H 0.22 4.10 6.17 -52.49 -0.32 3.78 15 25 H 0.30 5.49 8.31 -40.82 -0.34 5.15 15 LS Contribution 256.58 15.07 3.87 3.87 Total: -1.00 -26.41 256.58 -9.55 -35.96 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -1.06 Total: 2.53 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: -1.66 Total: 16.02 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.07 Total: -42.75 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.08 Total: -14.17 kcal Atomic # 14 Polarization: 15.40 SS G_CDS: -5.03 Total: 10.37 kcal Atomic # 16 Polarization: -6.12 SS G_CDS: -5.69 Total: -11.82 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -26.41 -9.55 -35.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238527502.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.201 kcal (2) G-P(sol) polarization free energy of solvation -26.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds