Wall clock time and date at job start Mon Mar 30 2020 04:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36837 * 121.76051 * 2 1 4 4 N 1.35621 * 128.45828 * 0.02562 * 3 2 1 5 5 C 1.29904 * 121.97646 * 180.02562 * 4 3 2 6 6 N 1.35977 * 121.98288 * 359.95078 * 5 4 3 7 7 C 1.37180 * 120.18238 * 180.02562 * 6 5 4 8 8 H 1.08003 * 120.00071 * 151.28359 * 7 6 5 9 9 C 1.39089 * 120.00065 * 331.28487 * 7 6 5 10 10 N 1.31240 * 120.00035 * 342.73407 * 9 7 6 11 11 Si 1.86799 * 120.00277 * 162.73752 * 9 7 6 12 12 H 1.48505 * 109.46977 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47197 * 119.99830 * 11 9 7 14 14 H 1.48503 * 109.47051 * 240.00070 * 11 9 7 15 15 C 1.34931 * 119.63802 * 0.02932 * 6 5 4 16 16 O 1.22023 * 120.65584 * 179.97438 * 15 6 5 17 17 C 1.37946 * 113.25617 * 179.97438 * 3 2 1 18 18 S 1.75957 * 109.42921 * 0.24805 * 17 3 2 19 19 C 1.32558 * 121.75705 * 179.97438 * 2 1 3 20 20 S 1.71201 * 125.01493 * 0.02562 * 19 2 1 21 21 H 1.09006 * 109.46947 * 89.99543 * 1 2 3 22 22 H 1.09002 * 109.47487 * 209.99740 * 1 2 3 23 23 H 1.08997 * 109.47025 * 330.00192 * 1 2 3 24 24 H 1.07994 * 119.01048 * 179.97438 * 5 4 3 25 25 H 0.97003 * 120.00387 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1852 1.1635 0.0000 4 7 1.7263 2.4396 0.0005 5 6 2.5304 3.4599 -0.0001 6 7 3.8820 3.3117 -0.0002 7 6 4.6969 4.4152 -0.0003 8 1 5.6776 4.3624 0.4491 9 6 4.2601 5.6022 -0.5790 10 7 3.2432 5.5925 -1.4085 11 14 5.1210 7.2102 -0.1756 12 1 6.2297 6.9523 0.7781 13 1 5.6685 7.8046 -1.4214 14 1 4.1494 8.1517 0.4369 15 6 4.4174 2.0731 -0.0003 16 8 5.6278 1.9186 -0.0009 17 6 3.5495 0.9595 0.0006 18 16 3.8830 -0.7682 -0.0061 19 6 2.1626 -1.1271 0.0005 20 16 1.4874 -2.7004 0.0006 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 2.1128 4.4559 -0.0001 25 1 2.9383 6.4203 -1.8118 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238527502.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:16 Heat of formation + Delta-G solvation = 27.125820 kcal Electronic energy + Delta-G solvation = -15917.309356 eV Core-core repulsion = 13148.936576 eV Total energy + Delta-G solvation = -2768.372779 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 269.003 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.03343 -41.10569 -38.32070 -36.50988 -33.97226 -32.48595 -29.91021 -28.63018 -26.47891 -25.49558 -23.51830 -21.24134 -20.26918 -19.59025 -18.64461 -17.89117 -17.68261 -17.37653 -16.54679 -16.26397 -15.89301 -15.52772 -15.09304 -14.08607 -13.86289 -13.70405 -13.65101 -13.27305 -13.05073 -12.95390 -12.59181 -12.16438 -12.01111 -11.39979 -11.20751 -11.09870 -10.93703 -10.04851 -9.09351 -9.02509 -8.66099 -6.77106 -1.17616 -0.36026 -0.29913 0.29186 0.45805 0.81047 1.19692 1.36126 1.42335 1.58905 1.93386 2.21645 2.32423 2.77128 2.99430 3.35834 3.70859 4.04856 4.26797 4.46447 4.62755 4.75807 4.94692 5.09091 5.22689 5.77770 6.02658 6.43128 6.79399 7.03077 8.01822 Molecular weight = 269.00amu Principal moments of inertia in cm(-1) A = 0.041476 B = 0.005871 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.930600 B = 4768.289348 C = 5350.154362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.414 5.414 3 C 0.340 3.660 4 N -0.538 5.538 5 C 0.372 3.628 6 N -0.332 5.332 7 C -0.354 4.354 8 H 0.115 0.885 9 C 0.028 3.972 10 N -0.843 5.843 11 Si 1.018 2.982 12 H -0.263 1.263 13 H -0.268 1.268 14 H -0.246 1.246 15 C 0.509 3.491 16 O -0.587 6.587 17 C -0.408 4.408 18 S 0.269 5.731 19 C 0.240 3.760 20 S -0.565 6.565 21 H 0.100 0.900 22 H 0.113 0.887 23 H 0.115 0.885 24 H 0.230 0.770 25 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.957 2.797 2.120 6.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.104 5.104 3 C 0.104 3.896 4 N -0.268 5.268 5 C 0.091 3.909 6 N -0.028 5.028 7 C -0.483 4.483 8 H 0.133 0.867 9 C -0.184 4.184 10 N -0.473 5.473 11 Si 0.836 3.164 12 H -0.186 1.186 13 H -0.193 1.193 14 H -0.170 1.170 15 C 0.310 3.690 16 O -0.472 6.472 17 C -0.537 4.537 18 S 0.513 5.487 19 C -0.125 4.125 20 S -0.433 6.433 21 H 0.119 0.881 22 H 0.131 0.869 23 H 0.133 0.867 24 H 0.246 0.754 25 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.569 1.119 1.960 5.096 hybrid contribution 0.417 1.965 -0.254 2.025 sum -4.152 3.084 1.706 5.446 Atomic orbital electron populations 1.22747 0.72029 1.07147 1.06335 1.43815 1.11106 1.01253 1.54235 1.18262 0.86039 0.88079 0.97173 1.67803 1.35499 0.94221 1.29254 1.25143 0.78644 0.98490 0.88583 1.42969 1.08168 1.07499 1.44203 1.20652 1.02287 0.86481 1.38904 0.86706 1.26670 0.97075 1.03409 0.91292 1.69681 1.24579 1.32646 1.20412 0.84521 0.78740 0.73999 0.79125 1.18642 1.19306 1.17002 1.16108 0.88068 0.82771 0.82005 1.90790 1.15049 1.85451 1.55861 1.23951 0.96458 1.01393 1.31906 1.85117 0.98033 0.92986 1.72515 1.27598 0.99365 0.94537 0.90984 1.92841 1.77419 1.02954 1.70039 0.88120 0.86850 0.86698 0.75426 0.87878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.49 10.38 127.77 1.33 2.82 15 2 N -0.41 -14.00 2.98 -546.22 -1.63 -15.62 15 3 C 0.34 13.10 7.49 132.51 0.99 14.09 15 4 N -0.54 -20.31 10.10 -196.58 -1.98 -22.29 15 5 C 0.37 14.86 10.30 180.13 1.85 16.72 15 6 N -0.33 -15.18 2.74 -479.96 -1.32 -16.50 15 7 C -0.35 -15.98 9.14 84.06 0.77 -15.22 15 8 H 0.12 5.41 7.60 -2.91 -0.02 5.39 15 9 C 0.03 1.09 5.01 84.99 0.43 1.51 15 10 N -0.84 -33.45 11.18 21.68 0.24 -33.21 15 11 Si 1.02 30.25 29.59 68.60 2.03 32.28 15 12 H -0.26 -8.06 7.11 99.48 0.71 -7.35 15 13 H -0.27 -7.96 7.11 99.48 0.71 -7.26 15 14 H -0.25 -6.59 7.11 99.48 0.71 -5.89 15 15 C 0.51 24.75 7.41 84.94 0.63 25.38 15 16 O -0.59 -31.67 16.97 -5.39 -0.09 -31.76 15 17 C -0.41 -17.45 6.44 22.93 0.15 -17.31 15 18 S 0.27 10.04 23.32 -56.49 -1.32 8.72 15 19 C 0.24 8.63 7.39 130.13 0.96 9.60 15 20 S -0.56 -21.30 29.65 -56.49 -1.67 -22.97 15 21 H 0.10 2.27 8.14 -2.38 -0.02 2.25 15 22 H 0.11 2.73 7.09 -2.39 -0.02 2.71 15 23 H 0.11 2.55 7.89 -2.39 -0.02 2.53 15 24 H 0.23 8.41 6.17 -2.91 -0.02 8.39 15 25 H 0.31 10.79 8.31 -92.71 -0.77 10.02 15 Total: -1.00 -55.57 256.58 2.62 -52.95 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.26 Total: 10.81 kcal Atomic # 6 Polarization: 30.49 SS G_CDS: 7.11 Total: 37.60 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -4.69 Total: -87.62 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.09 Total: -31.76 kcal Atomic # 14 Polarization: 30.25 SS G_CDS: 2.03 Total: 32.28 kcal Atomic # 16 Polarization: -11.26 SS G_CDS: -2.99 Total: -14.25 kcal Total: -55.57 2.62 -52.95 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238527502.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.075 kcal (2) G-P(sol) polarization free energy of solvation -55.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds