Wall clock time and date at job start Mon Mar 30 2020 05:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47109 * 274.31911 * 3 2 1 5 5 C 1.36948 * 120.00006 * 273.24114 * 4 3 2 6 6 H 1.07999 * 119.99501 * 186.70584 * 5 4 3 7 7 C 1.38809 * 119.99927 * 6.69799 * 5 4 3 8 8 N 1.31616 * 120.00185 * 25.21374 * 7 5 4 9 9 Si 1.86805 * 119.99828 * 205.21778 * 7 5 4 10 10 H 1.48493 * 109.46988 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47297 * 120.00028 * 9 7 5 12 12 H 1.48503 * 109.46829 * 239.99879 * 9 7 5 13 13 S 1.65596 * 119.99969 * 93.23402 * 4 3 2 14 14 O 1.42110 * 106.40193 * 156.46224 * 13 4 3 15 15 O 1.42098 * 106.40085 * 23.54660 * 13 4 3 16 16 C 1.76194 * 107.22279 * 270.00220 * 13 4 3 17 17 C 1.34675 * 126.59409 * 270.02652 * 16 13 4 18 18 N 1.34123 * 108.02362 * 179.97438 * 17 16 13 19 19 C 1.30499 * 109.25627 * 0.02562 * 18 17 16 20 20 C 1.50692 * 125.64998 * 179.97438 * 19 18 17 21 21 N 1.35048 * 108.69916 * 359.97438 * 19 18 17 22 22 H 0.97003 * 126.39416 * 179.97438 * 21 19 18 23 23 H 4.40639 * 5.51370 * 180.02562 * 4 1 2 24 24 H 1.08998 * 109.46817 * 154.32436 * 3 2 1 25 25 H 1.08993 * 109.47627 * 34.32040 * 3 2 1 26 26 H 0.97002 * 120.00202 * 180.02562 * 8 7 5 27 27 H 1.08001 * 125.98361 * 0.02562 * 17 16 13 28 28 H 1.09000 * 109.47541 * 90.02596 * 20 19 18 29 29 H 1.09005 * 109.47463 * 210.02395 * 20 19 18 30 30 H 1.08999 * 109.47368 * 330.02083 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1031 1.3773 5 6 3.2989 1.0274 2.1325 6 1 3.7598 0.9633 3.1071 7 6 2.8736 2.2555 1.6452 8 7 1.9104 2.3105 0.7499 9 14 3.6683 3.8303 2.2600 10 1 4.7177 3.4987 3.2569 11 1 4.2813 4.5542 1.1175 12 1 2.6372 4.6900 2.8948 13 16 3.4873 -1.5875 2.0210 14 8 4.4126 -1.3581 3.0749 15 8 3.7582 -2.4471 0.9224 16 6 2.0144 -2.1927 2.7750 17 6 1.6261 -1.9970 4.0497 18 7 0.4513 -2.6195 4.2258 19 6 0.0969 -3.1941 3.1090 20 6 -1.1614 -3.9949 2.8940 21 7 1.0447 -2.9521 2.1779 22 1 1.0394 -3.2595 1.2579 23 1 -1.0499 -0.0002 0.0000 24 1 3.0089 0.9270 -0.4453 25 1 3.0098 -0.8478 -0.5794 26 1 1.6133 3.1688 0.4091 27 1 2.1659 -1.4362 4.7984 28 1 -1.9604 -3.3334 2.5593 29 1 -0.9812 -4.7587 2.1374 30 1 -1.4527 -4.4721 3.8297 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300798565.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:55 Heat of formation + Delta-G solvation = 52.529399 kcal Electronic energy + Delta-G solvation = -18920.849930 eV Core-core repulsion = 15846.658956 eV Total energy + Delta-G solvation = -3074.190974 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.062 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.42062 -36.45766 -35.93857 -34.52517 -32.18351 -32.00000 -31.44460 -31.26574 -26.75861 -26.64052 -23.96597 -21.42893 -20.31369 -18.69575 -18.36877 -17.70814 -16.75640 -16.48164 -15.08870 -14.96858 -14.68237 -14.48106 -13.69303 -13.46958 -13.28020 -13.00826 -12.67153 -12.45047 -12.31194 -11.96542 -11.37086 -11.10742 -10.90728 -10.85116 -10.63924 -10.55033 -10.37642 -9.86077 -9.57505 -9.52063 -9.35283 -9.00192 -8.46339 -8.10730 -6.74120 -4.07572 1.52357 2.25110 3.01645 3.10058 3.18568 3.46018 3.57126 3.72490 3.90585 4.02243 4.48075 4.57522 4.74478 5.01151 5.26007 5.43105 5.55471 5.57843 5.72143 5.91235 6.14583 6.18627 6.53507 6.60923 6.86003 7.01975 7.13293 7.17686 7.77714 8.03903 8.39963 8.42263 8.76139 8.85347 10.16733 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.021050 B = 0.008280 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.838522 B = 3380.648762 C = 3636.409487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.113 4.113 3 C 0.231 3.769 4 N -0.784 5.784 5 C -0.231 4.231 6 H 0.128 0.872 7 C 0.027 3.973 8 N -0.810 5.810 9 Si 0.934 3.066 10 H -0.258 1.258 11 H -0.274 1.274 12 H -0.278 1.278 13 S 2.527 3.473 14 O -0.974 6.974 15 O -1.003 7.003 16 C -0.554 4.554 17 C 0.063 3.937 18 N -0.504 5.504 19 C 0.211 3.789 20 C -0.067 4.067 21 N -0.513 5.513 22 H 0.419 0.581 23 H 0.195 0.805 24 H 0.118 0.882 25 H 0.082 0.918 26 H 0.278 0.722 27 H 0.175 0.825 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.801 -3.295 -1.907 5.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.115 4.115 3 C 0.106 3.894 4 N -0.605 5.605 5 C -0.381 4.381 6 H 0.145 0.855 7 C -0.187 4.187 8 N -0.449 5.449 9 Si 0.758 3.242 10 H -0.182 1.182 11 H -0.199 1.199 12 H -0.204 1.204 13 S 2.623 3.377 14 O -0.963 6.963 15 O -0.992 6.992 16 C -0.744 4.744 17 C -0.089 4.089 18 N -0.225 5.225 19 C -0.055 4.055 20 C -0.125 4.125 21 N -0.114 5.114 22 H 0.257 0.743 23 H 0.212 0.788 24 H 0.136 0.864 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.192 0.808 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.551 -4.018 -1.239 5.504 hybrid contribution -0.624 0.746 -0.512 1.099 sum -4.175 -3.272 -1.751 5.586 Atomic orbital electron populations 1.24197 0.95284 1.06838 1.02171 1.23407 0.94559 0.95155 0.98412 1.18573 0.83858 1.03149 0.83826 1.55781 1.70499 1.18924 1.15297 1.20377 1.29717 0.82836 1.05175 0.85454 1.25714 0.95114 1.00517 0.97314 1.70235 1.20850 1.27302 1.26524 0.85723 0.79522 0.79653 0.79305 1.18177 1.19908 1.20350 1.12828 0.78056 0.74149 0.72642 1.93369 1.61246 1.84836 1.56867 1.93312 1.85917 1.67231 1.52771 1.35999 1.19282 1.12299 1.06774 1.22125 0.92850 0.99635 0.94280 1.70173 1.14049 1.14017 1.24295 1.23581 0.94441 1.01637 0.85834 1.20162 0.90919 0.97894 1.03544 1.42811 1.16463 1.39195 1.12977 0.74302 0.78755 0.86439 0.89985 0.91095 0.80805 0.90156 0.90937 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.30 19.25 29.55 0.57 -4.73 16 2 C -0.11 -2.41 11.25 -37.12 -0.42 -2.82 16 3 C 0.23 4.92 5.45 -6.83 -0.04 4.88 16 4 N -0.78 -17.90 2.88 -62.78 -0.18 -18.09 16 5 C -0.23 -5.41 9.48 -15.06 -0.14 -5.56 16 6 H 0.13 2.97 7.22 -52.49 -0.38 2.59 16 7 C 0.03 0.61 4.92 -17.43 -0.09 0.52 16 8 N -0.81 -18.46 8.97 55.49 0.50 -17.96 16 9 Si 0.93 17.67 29.62 -169.99 -5.04 12.64 16 10 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 11 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 12 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 13 S 2.53 57.97 5.81 -107.50 -0.63 57.35 16 14 O -0.97 -24.46 16.64 -57.17 -0.95 -25.41 16 15 O -1.00 -23.71 16.59 -57.17 -0.95 -24.66 16 16 C -0.55 -12.01 7.27 -16.56 -0.12 -12.14 16 17 C 0.06 1.38 11.64 -17.81 -0.21 1.18 16 18 N -0.50 -10.48 11.25 -10.82 -0.12 -10.61 16 19 C 0.21 3.78 8.15 -155.42 -1.27 2.51 16 20 C -0.07 -0.80 10.51 36.00 0.38 -0.43 16 21 N -0.51 -9.65 6.15 -9.45 -0.06 -9.71 16 22 H 0.42 6.88 8.96 -40.82 -0.37 6.51 16 23 H 0.20 3.24 7.80 -54.09 -0.42 2.82 16 24 H 0.12 2.51 6.41 -51.93 -0.33 2.17 16 25 H 0.08 1.62 6.95 -51.93 -0.36 1.25 16 26 H 0.28 5.97 8.31 -40.82 -0.34 5.63 16 27 H 0.17 3.56 8.06 -52.49 -0.42 3.14 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 285.30 15.07 4.30 4.30 Total: -1.00 -30.28 285.30 -7.14 -37.42 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -2.69 Total: 11.29 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -1.33 Total: -16.57 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.14 Total: -56.36 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -1.90 Total: -50.07 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.04 Total: 12.64 kcal Atomic # 16 Polarization: 57.97 SS G_CDS: -0.63 Total: 57.35 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.28 -7.14 -37.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300798565.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.949 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds