Wall clock time and date at job start Mon Mar 30 2020 05:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47109 * 274.31911 * 3 2 1 5 5 C 1.36948 * 120.00006 * 273.24114 * 4 3 2 6 6 H 1.07999 * 119.99501 * 186.70584 * 5 4 3 7 7 C 1.38809 * 119.99927 * 6.69799 * 5 4 3 8 8 N 1.31616 * 120.00185 * 25.21374 * 7 5 4 9 9 Si 1.86805 * 119.99828 * 205.21778 * 7 5 4 10 10 H 1.48493 * 109.46988 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47297 * 120.00028 * 9 7 5 12 12 H 1.48503 * 109.46829 * 239.99879 * 9 7 5 13 13 S 1.65596 * 119.99969 * 93.23402 * 4 3 2 14 14 O 1.42110 * 106.40193 * 156.46224 * 13 4 3 15 15 O 1.42098 * 106.40085 * 23.54660 * 13 4 3 16 16 C 1.76194 * 107.22279 * 270.00220 * 13 4 3 17 17 C 1.34675 * 126.59409 * 270.02652 * 16 13 4 18 18 N 1.34123 * 108.02362 * 179.97438 * 17 16 13 19 19 C 1.30499 * 109.25627 * 0.02562 * 18 17 16 20 20 C 1.50692 * 125.64998 * 179.97438 * 19 18 17 21 21 N 1.35048 * 108.69916 * 359.97438 * 19 18 17 22 22 H 0.97003 * 126.39416 * 179.97438 * 21 19 18 23 23 H 4.40639 * 5.51370 * 180.02562 * 4 1 2 24 24 H 1.08998 * 109.46817 * 154.32436 * 3 2 1 25 25 H 1.08993 * 109.47627 * 34.32040 * 3 2 1 26 26 H 0.97002 * 120.00202 * 180.02562 * 8 7 5 27 27 H 1.08001 * 125.98361 * 0.02562 * 17 16 13 28 28 H 1.09000 * 109.47541 * 90.02596 * 20 19 18 29 29 H 1.09005 * 109.47463 * 210.02395 * 20 19 18 30 30 H 1.08999 * 109.47368 * 330.02083 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1031 1.3773 5 6 3.2989 1.0274 2.1325 6 1 3.7598 0.9633 3.1071 7 6 2.8736 2.2555 1.6452 8 7 1.9104 2.3105 0.7499 9 14 3.6683 3.8303 2.2600 10 1 4.7177 3.4987 3.2569 11 1 4.2813 4.5542 1.1175 12 1 2.6372 4.6900 2.8948 13 16 3.4873 -1.5875 2.0210 14 8 4.4126 -1.3581 3.0749 15 8 3.7582 -2.4471 0.9224 16 6 2.0144 -2.1927 2.7750 17 6 1.6261 -1.9970 4.0497 18 7 0.4513 -2.6195 4.2258 19 6 0.0969 -3.1941 3.1090 20 6 -1.1614 -3.9949 2.8940 21 7 1.0447 -2.9521 2.1779 22 1 1.0394 -3.2595 1.2579 23 1 -1.0499 -0.0002 0.0000 24 1 3.0089 0.9270 -0.4453 25 1 3.0098 -0.8478 -0.5794 26 1 1.6133 3.1688 0.4091 27 1 2.1659 -1.4362 4.7984 28 1 -1.9604 -3.3334 2.5593 29 1 -0.9812 -4.7587 2.1374 30 1 -1.4527 -4.4721 3.8297 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300798565.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:54 Heat of formation + Delta-G solvation = 31.225851 kcal Electronic energy + Delta-G solvation = -18921.773721 eV Core-core repulsion = 15846.658956 eV Total energy + Delta-G solvation = -3075.114765 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.062 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.94450 -38.16606 -37.80141 -36.40798 -33.86829 -33.54392 -32.94296 -32.70634 -28.42242 -28.01813 -25.69899 -23.03422 -21.80262 -20.39377 -20.00443 -19.33174 -18.50072 -18.18011 -16.71792 -16.56245 -16.29433 -16.11571 -15.34561 -15.06243 -14.90583 -14.33487 -14.25641 -13.61544 -13.57935 -13.34780 -13.13851 -12.79147 -12.70572 -12.60942 -12.36724 -12.30983 -11.96480 -11.52907 -11.16762 -11.10524 -10.97849 -10.63327 -10.16565 -9.68075 -8.44888 -5.86136 -0.22838 0.67384 1.50171 1.56019 1.69139 1.90545 2.04025 2.18949 2.31981 2.41153 2.77869 2.85681 3.23160 3.47838 3.80694 3.91343 4.13401 4.34657 4.49786 4.67767 4.74153 4.91913 4.95354 5.01193 5.20348 5.36700 5.46295 5.57334 6.28901 6.38850 6.65993 6.87246 7.09326 7.17469 8.45712 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.021050 B = 0.008280 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.838522 B = 3380.648762 C = 3636.409487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.146 4.146 3 C 0.230 3.770 4 N -0.788 5.788 5 C -0.257 4.257 6 H 0.119 0.881 7 C 0.002 3.998 8 N -0.823 5.823 9 Si 0.993 3.007 10 H -0.261 1.261 11 H -0.265 1.265 12 H -0.277 1.277 13 S 2.538 3.462 14 O -1.003 7.003 15 O -1.015 7.015 16 C -0.577 4.577 17 C 0.048 3.952 18 N -0.532 5.532 19 C 0.225 3.775 20 C -0.067 4.067 21 N -0.512 5.512 22 H 0.429 0.571 23 H 0.226 0.774 24 H 0.113 0.887 25 H 0.092 0.908 26 H 0.283 0.717 27 H 0.173 0.827 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.401 -3.320 -2.408 6.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.149 4.149 3 C 0.106 3.894 4 N -0.610 5.610 5 C -0.408 4.408 6 H 0.137 0.863 7 C -0.211 4.211 8 N -0.461 5.461 9 Si 0.815 3.185 10 H -0.185 1.185 11 H -0.190 1.190 12 H -0.202 1.202 13 S 2.637 3.363 14 O -0.992 6.992 15 O -1.005 7.005 16 C -0.768 4.768 17 C -0.105 4.105 18 N -0.253 5.253 19 C -0.041 4.041 20 C -0.125 4.125 21 N -0.114 5.114 22 H 0.269 0.731 23 H 0.242 0.758 24 H 0.131 0.869 25 H 0.109 0.891 26 H 0.094 0.906 27 H 0.190 0.810 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.138 -4.049 -1.778 6.779 hybrid contribution -0.250 0.692 -0.366 0.822 sum -5.388 -3.357 -2.145 6.701 Atomic orbital electron populations 1.24942 0.96120 1.05389 1.00638 1.23565 0.95004 0.96511 0.99817 1.18583 0.84454 1.03297 0.83102 1.55713 1.71007 1.18503 1.15734 1.20503 1.31069 0.83663 1.05520 0.86330 1.26385 0.95098 1.02362 0.97230 1.70294 1.21054 1.28153 1.26607 0.84863 0.78513 0.76252 0.78914 1.18465 1.18986 1.20230 1.12410 0.77896 0.74034 0.71977 1.93316 1.62712 1.85335 1.57845 1.93274 1.86360 1.67709 1.53130 1.35601 1.19952 1.14199 1.07060 1.22294 0.93632 0.99991 0.94533 1.70199 1.13909 1.15286 1.25929 1.24712 0.95078 0.99736 0.84554 1.20483 0.88337 0.98273 1.05393 1.42830 1.16063 1.38832 1.13678 0.73072 0.75771 0.86908 0.89062 0.90606 0.80969 0.88243 0.87877 0.88072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.53 19.25 74.32 1.43 -8.10 16 2 C -0.15 -6.12 11.25 31.13 0.35 -5.77 16 3 C 0.23 9.82 5.45 84.57 0.46 10.28 16 4 N -0.79 -36.45 2.88 -352.52 -1.02 -37.46 16 5 C -0.26 -12.22 9.48 84.03 0.80 -11.43 16 6 H 0.12 5.71 7.22 -2.91 -0.02 5.69 16 7 C 0.00 0.08 4.92 84.86 0.42 0.50 16 8 N -0.82 -36.87 8.97 21.65 0.19 -36.67 16 9 Si 0.99 35.68 29.62 68.60 2.03 37.72 16 10 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 11 H -0.27 -9.13 7.11 99.48 0.71 -8.42 16 12 H -0.28 -9.88 7.11 99.48 0.71 -9.17 16 13 S 2.54 118.40 5.81 -56.49 -0.33 118.07 16 14 O -1.00 -51.81 16.64 -128.00 -2.13 -53.94 16 15 O -1.02 -48.34 16.59 -128.00 -2.12 -50.46 16 16 C -0.58 -25.03 7.27 83.09 0.60 -24.43 16 17 C 0.05 2.12 11.64 83.53 0.97 3.09 16 18 N -0.53 -21.64 11.25 -188.13 -2.12 -23.75 16 19 C 0.23 7.61 8.15 138.12 1.13 8.74 16 20 C -0.07 -1.35 10.51 71.23 0.75 -0.60 16 21 N -0.51 -18.57 6.15 -183.81 -1.13 -19.70 16 22 H 0.43 13.39 8.96 -92.71 -0.83 12.56 16 23 H 0.23 6.73 7.80 -4.42 -0.03 6.69 16 24 H 0.11 4.85 6.41 -2.39 -0.02 4.83 16 25 H 0.09 3.61 6.95 -2.39 -0.02 3.60 16 26 H 0.28 11.84 8.31 -92.71 -0.77 11.06 16 27 H 0.17 7.33 8.06 -2.91 -0.02 7.30 16 28 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -64.09 285.30 0.64 -63.45 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.35 Total: 30.47 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: 6.91 Total: -27.71 kcal Atomic # 7 Polarization: -113.52 SS G_CDS: -4.07 Total: -117.59 kcal Atomic # 8 Polarization: -100.14 SS G_CDS: -4.25 Total: -104.40 kcal Atomic # 14 Polarization: 35.68 SS G_CDS: 2.03 Total: 37.72 kcal Atomic # 16 Polarization: 118.40 SS G_CDS: -0.33 Total: 118.07 kcal Total: -64.09 0.64 -63.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300798565.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.679 kcal (2) G-P(sol) polarization free energy of solvation -64.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds