Wall clock time and date at job start Mon Mar 30 2020 04:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42903 * 114.00025 * 2 1 4 4 C 1.53003 * 112.84688 * 294.45975 * 3 2 1 5 5 C 1.52995 * 109.47146 * 299.57857 * 4 3 2 6 6 N 1.46899 * 109.47335 * 180.94264 * 5 4 3 7 7 C 1.46897 * 110.99785 * 294.30430 * 6 5 4 8 8 C 1.53239 * 109.33634 * 172.74492 * 7 6 5 9 9 N 1.47077 * 108.52476 * 53.83169 * 8 7 6 10 10 C 1.36934 * 120.88619 * 128.79227 * 9 8 7 11 11 H 1.08003 * 120.00366 * 204.63785 * 10 9 8 12 12 C 1.38810 * 119.99859 * 24.63307 * 10 9 8 13 13 N 1.31620 * 119.99805 * 18.76564 * 12 10 9 14 14 Si 1.86804 * 120.00319 * 198.75783 * 12 10 9 15 15 H 1.48503 * 109.46806 * 60.00426 * 14 12 10 16 16 H 1.48498 * 109.47212 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46913 * 300.00496 * 14 12 10 18 18 C 1.47084 * 118.23516 * 308.81539 * 9 8 7 19 19 C 1.46900 * 111.00132 * 170.00010 * 6 5 4 20 20 C 1.53778 * 113.61841 * 163.26156 * 3 2 1 21 21 C 1.53951 * 87.02104 * 220.05000 * 20 3 2 22 22 C 1.53781 * 113.61239 * 65.64997 * 3 2 1 23 23 H 1.09003 * 109.47237 * 178.83414 * 1 2 3 24 24 H 1.09003 * 109.47239 * 58.84507 * 1 2 3 25 25 H 1.09000 * 109.47854 * 298.83852 * 1 2 3 26 26 H 1.08991 * 109.47220 * 59.58265 * 4 3 2 27 27 H 1.09000 * 109.47009 * 179.58285 * 4 3 2 28 28 H 1.09002 * 109.47551 * 300.94498 * 5 4 3 29 29 H 1.09009 * 109.46879 * 60.94375 * 5 4 3 30 30 H 1.08997 * 109.49632 * 292.70443 * 7 6 5 31 31 H 1.09004 * 109.49413 * 52.78861 * 7 6 5 32 32 H 1.09007 * 109.62889 * 294.12112 * 8 7 6 33 33 H 1.09004 * 109.79177 * 173.63513 * 8 7 6 34 34 H 0.97000 * 119.99546 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.62582 * 291.47295 * 18 9 8 36 36 H 1.08996 * 109.78850 * 170.98562 * 18 9 8 37 37 H 1.09000 * 109.49286 * 307.22155 * 19 6 5 38 38 H 1.09002 * 109.49163 * 67.26780 * 19 6 5 39 39 H 1.09010 * 113.61017 * 334.56903 * 20 3 2 40 40 H 1.08997 * 113.61672 * 105.46979 * 20 3 2 41 41 H 1.09001 * 113.53609 * 270.80876 * 21 20 3 42 42 H 1.08999 * 113.74732 * 139.94228 * 21 20 3 43 43 H 1.09001 * 113.62003 * 254.52857 * 22 3 2 44 44 H 1.08998 * 113.61675 * 25.35581 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7185 2.0856 -1.2834 5 6 2.2929 1.3284 -2.4823 6 7 2.0326 2.0885 -3.7121 7 6 0.5923 2.1596 -3.9920 8 6 0.3510 3.1065 -5.1725 9 7 1.1831 2.6660 -6.3025 10 6 0.6376 2.4713 -7.5433 11 1 1.1118 1.7981 -8.2422 12 6 -0.5251 3.1390 -7.9028 13 7 -0.9015 4.2101 -7.2369 14 14 -1.5554 2.5175 -9.3317 15 1 -2.0101 1.1325 -9.0484 16 1 -2.7363 3.3998 -9.5111 17 1 -0.7384 2.5264 -10.5717 18 6 2.6168 2.4397 -6.0642 19 6 2.7689 1.5192 -4.8487 20 6 3.4934 1.3195 0.4058 21 6 3.1820 2.6034 1.1962 22 6 1.7300 2.1045 1.2837 23 1 -0.3634 -1.0275 -0.0209 24 1 -0.3634 0.5317 -0.8795 25 1 -0.3635 0.4957 0.9002 26 1 0.6409 2.1950 -1.4052 27 1 2.1791 3.0716 -1.2219 28 1 3.3681 1.2043 -2.3526 29 1 1.8202 0.3487 -2.5537 30 1 0.2206 1.1657 -4.2411 31 1 0.0689 2.5343 -3.1124 32 1 0.6263 4.1224 -4.8892 33 1 -0.7002 3.0784 -5.4592 34 1 -1.7137 4.6769 -7.4884 35 1 3.1098 3.3916 -5.8667 36 1 3.0664 1.9690 -6.9385 37 1 3.8240 1.4292 -4.5902 38 1 2.3673 0.5339 -5.0855 39 1 3.7816 0.4779 1.0358 40 1 4.1737 1.4753 -0.4314 41 1 3.2960 3.5146 0.6089 42 1 3.6843 2.6569 2.1621 43 1 0.9888 2.8932 1.1542 44 1 1.5338 1.4781 2.1539 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310474746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:12 Heat of formation + Delta-G solvation = 6.124554 kcal Electronic energy + Delta-G solvation = -21673.932960 eV Core-core repulsion = 18627.902044 eV Total energy + Delta-G solvation = -3046.030916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.18207 -37.93815 -35.88355 -34.55034 -31.78200 -29.87993 -29.85175 -27.19558 -26.43312 -25.66609 -23.91726 -22.95495 -22.44413 -21.20510 -19.05570 -18.74342 -16.89387 -16.77026 -15.78013 -15.32883 -15.00029 -14.93438 -14.41220 -14.28800 -13.78297 -13.47493 -13.40556 -13.21165 -12.76423 -12.56577 -12.29667 -12.10771 -11.80018 -11.43466 -11.38228 -11.12180 -11.01841 -10.86944 -10.75827 -10.69471 -10.40754 -10.28949 -10.16869 -9.94977 -9.67834 -9.58568 -9.42026 -8.46770 -7.73845 -6.65793 -5.75470 -3.13892 3.40188 3.45847 3.47376 3.69010 4.25358 4.44691 4.49358 4.53396 4.64704 4.85151 5.25947 5.27420 5.34290 5.37386 5.42200 5.44294 5.49634 5.58803 5.60239 5.63952 5.72688 5.77184 5.84907 5.95543 5.98960 6.03950 6.17588 6.22774 6.24633 6.25101 6.34333 6.41146 6.59395 6.74215 6.97130 7.20855 7.29704 7.67264 7.70261 7.75852 7.86483 8.45371 9.23979 9.88299 10.46183 11.33379 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031873 B = 0.004166 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.285608 B = 6719.294142 C = 6984.234087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.091 3.909 4 C -0.119 4.119 5 C 0.062 3.938 6 N -0.534 5.534 7 C 0.035 3.965 8 C 0.177 3.823 9 N -0.595 5.595 10 C -0.251 4.251 11 H 0.066 0.934 12 C 0.000 4.000 13 N -0.904 5.904 14 Si 0.902 3.098 15 H -0.285 1.285 16 H -0.290 1.290 17 H -0.283 1.283 18 C 0.149 3.851 19 C 0.045 3.955 20 C -0.122 4.122 21 C -0.138 4.138 22 C -0.163 4.163 23 H 0.081 0.919 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.030 0.970 30 H 0.023 0.977 31 H 0.059 0.941 32 H 0.024 0.976 33 H 0.090 0.910 34 H 0.254 0.746 35 H 0.025 0.975 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.026 0.974 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.487 -5.249 16.749 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C 0.051 3.949 4 C -0.157 4.157 5 C -0.066 4.066 6 N -0.259 5.259 7 C -0.094 4.094 8 C 0.051 3.949 9 N -0.319 5.319 10 C -0.380 4.380 11 H 0.084 0.916 12 C -0.198 4.198 13 N -0.549 5.549 14 Si 0.731 3.269 15 H -0.212 1.212 16 H -0.216 1.216 17 H -0.209 1.209 18 C 0.022 3.978 19 C -0.084 4.084 20 C -0.159 4.159 21 C -0.175 4.175 22 C -0.201 4.201 23 H 0.100 0.900 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.108 0.892 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.615 -4.825 16.746 18.310 hybrid contribution -1.160 -0.915 -0.809 1.685 sum 4.455 -5.740 15.938 17.516 Atomic orbital electron populations 1.22668 0.81499 1.02321 1.00144 1.87906 1.19428 1.27141 1.94848 1.23060 0.94677 0.83389 0.93749 1.21808 1.01931 0.99476 0.92448 1.21924 1.00066 0.94773 0.89879 1.61976 1.09838 1.51694 1.02390 1.22909 0.86850 0.99779 0.99904 1.20888 0.97492 0.92996 0.83566 1.44128 1.01892 1.79287 1.06579 1.19184 1.07492 1.19526 0.91834 0.91618 1.24952 1.00787 0.95630 0.98456 1.70040 1.24931 1.17085 1.42830 0.86377 0.80020 0.78176 0.82283 1.21173 1.21624 1.20923 1.20965 0.87205 0.95925 0.93670 1.22591 0.96510 0.96961 0.92351 1.23074 0.94481 0.98085 1.00285 1.22718 0.96323 0.97796 1.00706 1.23545 0.97800 1.00188 0.98528 0.90034 0.93723 0.94257 0.91288 0.89845 0.91513 0.95186 0.95908 0.92250 0.95745 0.89232 0.93632 0.95729 0.92702 0.92139 0.95551 0.89495 0.90432 0.89573 0.91023 0.91152 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.61 101.05 1.07 1.40 16 2 O -0.37 -4.86 10.21 -35.23 -0.36 -5.22 16 3 C 0.09 1.06 0.82 -89.81 -0.07 0.98 16 4 C -0.12 -1.57 4.27 -26.73 -0.11 -1.68 16 5 C 0.06 0.94 4.75 -3.83 -0.02 0.93 16 6 N -0.53 -9.87 4.63 -234.32 -1.08 -10.95 16 7 C 0.03 0.70 5.46 -3.70 -0.02 0.68 16 8 C 0.18 4.37 5.46 -3.60 -0.02 4.35 16 9 N -0.60 -15.49 3.04 -172.01 -0.52 -16.02 16 10 C -0.25 -7.05 9.65 -15.06 -0.15 -7.20 16 11 H 0.07 1.81 7.89 -52.48 -0.41 1.39 16 12 C 0.00 0.00 4.91 -17.43 -0.09 -0.09 16 13 N -0.90 -26.56 11.12 55.49 0.62 -25.94 16 14 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 C 0.15 3.27 6.69 -3.60 -0.02 3.25 16 19 C 0.05 0.85 5.62 -3.70 -0.02 0.83 16 20 C -0.12 -1.24 7.36 -25.83 -0.19 -1.43 16 21 C -0.14 -1.24 7.74 -25.83 -0.20 -1.43 16 22 C -0.16 -1.59 6.64 -25.92 -0.17 -1.76 16 23 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.04 0.52 6.79 -51.93 -0.35 0.17 16 25 H 0.04 0.37 7.59 -51.93 -0.39 -0.02 16 26 H 0.07 0.96 5.24 -51.93 -0.27 0.69 16 27 H 0.08 1.10 7.30 -51.93 -0.38 0.72 16 28 H 0.07 0.96 6.89 -51.93 -0.36 0.60 16 29 H 0.03 0.49 7.87 -51.92 -0.41 0.09 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 1.09 6.18 -51.93 -0.32 0.76 16 32 H 0.02 0.65 8.14 -51.92 -0.42 0.22 16 33 H 0.09 2.44 6.01 -51.93 -0.31 2.13 16 34 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.05 1.15 7.95 -51.93 -0.41 0.74 16 37 H 0.06 0.98 7.99 -51.93 -0.41 0.57 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 40 H 0.08 0.80 7.08 -51.93 -0.37 0.43 16 41 H 0.09 0.77 7.60 -51.93 -0.39 0.38 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 44 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 333.80 15.07 5.03 5.03 Total: -1.00 -30.26 333.80 -9.10 -39.37 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -7.74 Total: -2.00 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -0.01 Total: -1.17 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.99 Total: -52.91 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.36 Total: -5.22 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.26 -9.10 -39.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310474746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.491 kcal (2) G-P(sol) polarization free energy of solvation -30.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds