Wall clock time and date at job start Mon Mar 30 2020 04:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42903 * 114.00025 * 2 1 4 4 C 1.53003 * 112.84688 * 294.45975 * 3 2 1 5 5 C 1.52995 * 109.47146 * 299.57857 * 4 3 2 6 6 N 1.46899 * 109.47335 * 180.94264 * 5 4 3 7 7 C 1.46897 * 110.99785 * 294.30430 * 6 5 4 8 8 C 1.53239 * 109.33634 * 172.74492 * 7 6 5 9 9 N 1.47077 * 108.52476 * 53.83169 * 8 7 6 10 10 C 1.36934 * 120.88619 * 128.79227 * 9 8 7 11 11 H 1.08003 * 120.00366 * 204.63785 * 10 9 8 12 12 C 1.38810 * 119.99859 * 24.63307 * 10 9 8 13 13 N 1.31620 * 119.99805 * 18.76564 * 12 10 9 14 14 Si 1.86804 * 120.00319 * 198.75783 * 12 10 9 15 15 H 1.48503 * 109.46806 * 60.00426 * 14 12 10 16 16 H 1.48498 * 109.47212 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46913 * 300.00496 * 14 12 10 18 18 C 1.47084 * 118.23516 * 308.81539 * 9 8 7 19 19 C 1.46900 * 111.00132 * 170.00010 * 6 5 4 20 20 C 1.53778 * 113.61841 * 163.26156 * 3 2 1 21 21 C 1.53951 * 87.02104 * 220.05000 * 20 3 2 22 22 C 1.53781 * 113.61239 * 65.64997 * 3 2 1 23 23 H 1.09003 * 109.47237 * 178.83414 * 1 2 3 24 24 H 1.09003 * 109.47239 * 58.84507 * 1 2 3 25 25 H 1.09000 * 109.47854 * 298.83852 * 1 2 3 26 26 H 1.08991 * 109.47220 * 59.58265 * 4 3 2 27 27 H 1.09000 * 109.47009 * 179.58285 * 4 3 2 28 28 H 1.09002 * 109.47551 * 300.94498 * 5 4 3 29 29 H 1.09009 * 109.46879 * 60.94375 * 5 4 3 30 30 H 1.08997 * 109.49632 * 292.70443 * 7 6 5 31 31 H 1.09004 * 109.49413 * 52.78861 * 7 6 5 32 32 H 1.09007 * 109.62889 * 294.12112 * 8 7 6 33 33 H 1.09004 * 109.79177 * 173.63513 * 8 7 6 34 34 H 0.97000 * 119.99546 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.62582 * 291.47295 * 18 9 8 36 36 H 1.08996 * 109.78850 * 170.98562 * 18 9 8 37 37 H 1.09000 * 109.49286 * 307.22155 * 19 6 5 38 38 H 1.09002 * 109.49163 * 67.26780 * 19 6 5 39 39 H 1.09010 * 113.61017 * 334.56903 * 20 3 2 40 40 H 1.08997 * 113.61672 * 105.46979 * 20 3 2 41 41 H 1.09001 * 113.53609 * 270.80876 * 21 20 3 42 42 H 1.08999 * 113.74732 * 139.94228 * 21 20 3 43 43 H 1.09001 * 113.62003 * 254.52857 * 22 3 2 44 44 H 1.08998 * 113.61675 * 25.35581 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7185 2.0856 -1.2834 5 6 2.2929 1.3284 -2.4823 6 7 2.0326 2.0885 -3.7121 7 6 0.5923 2.1596 -3.9920 8 6 0.3510 3.1065 -5.1725 9 7 1.1831 2.6660 -6.3025 10 6 0.6376 2.4713 -7.5433 11 1 1.1118 1.7981 -8.2422 12 6 -0.5251 3.1390 -7.9028 13 7 -0.9015 4.2101 -7.2369 14 14 -1.5554 2.5175 -9.3317 15 1 -2.0101 1.1325 -9.0484 16 1 -2.7363 3.3998 -9.5111 17 1 -0.7384 2.5264 -10.5717 18 6 2.6168 2.4397 -6.0642 19 6 2.7689 1.5192 -4.8487 20 6 3.4934 1.3195 0.4058 21 6 3.1820 2.6034 1.1962 22 6 1.7300 2.1045 1.2837 23 1 -0.3634 -1.0275 -0.0209 24 1 -0.3634 0.5317 -0.8795 25 1 -0.3635 0.4957 0.9002 26 1 0.6409 2.1950 -1.4052 27 1 2.1791 3.0716 -1.2219 28 1 3.3681 1.2043 -2.3526 29 1 1.8202 0.3487 -2.5537 30 1 0.2206 1.1657 -4.2411 31 1 0.0689 2.5343 -3.1124 32 1 0.6263 4.1224 -4.8892 33 1 -0.7002 3.0784 -5.4592 34 1 -1.7137 4.6769 -7.4884 35 1 3.1098 3.3916 -5.8667 36 1 3.0664 1.9690 -6.9385 37 1 3.8240 1.4292 -4.5902 38 1 2.3673 0.5339 -5.0855 39 1 3.7816 0.4779 1.0358 40 1 4.1737 1.4753 -0.4314 41 1 3.2960 3.5146 0.6089 42 1 3.6843 2.6569 2.1621 43 1 0.9888 2.8932 1.1542 44 1 1.5338 1.4781 2.1539 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310474746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:12 Heat of formation + Delta-G solvation = -13.016028 kcal Electronic energy + Delta-G solvation = -21674.762958 eV Core-core repulsion = 18627.902044 eV Total energy + Delta-G solvation = -3046.860913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.09085 -39.54504 -36.74870 -36.33124 -33.60632 -31.66527 -31.34208 -28.22322 -27.93285 -26.56272 -25.35818 -24.39862 -24.03438 -22.51638 -20.83979 -19.62891 -18.73902 -17.80720 -17.09554 -16.62466 -16.26578 -16.13062 -15.84864 -15.54964 -15.35096 -15.23116 -15.04139 -14.76332 -14.07031 -13.75941 -13.38276 -13.23588 -13.06278 -12.98323 -12.69824 -12.59366 -12.39415 -12.34572 -12.15839 -12.03388 -11.88642 -11.77337 -11.62213 -11.54863 -11.33687 -10.96594 -10.58537 -10.36027 -9.28934 -8.72140 -7.89003 -5.31235 1.45749 1.48283 1.55401 2.50147 2.79653 2.99634 3.25722 3.56715 3.64171 3.67203 3.86740 3.88512 4.18516 4.24807 4.31685 4.33795 4.45763 4.51234 4.53100 4.57201 4.64344 4.64869 4.71304 4.81158 4.83211 4.84459 4.86029 4.94789 5.01403 5.06361 5.15035 5.15885 5.22737 5.32258 5.36551 5.46323 5.58998 5.65857 6.17100 6.25332 6.33990 6.35415 7.11454 7.82678 8.36487 9.17976 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031873 B = 0.004166 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.285608 B = 6719.294142 C = 6984.234087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.391 6.391 3 C 0.083 3.917 4 C -0.112 4.112 5 C 0.069 3.931 6 N -0.539 5.539 7 C 0.053 3.947 8 C 0.185 3.815 9 N -0.615 5.615 10 C -0.268 4.268 11 H 0.068 0.932 12 C -0.051 4.051 13 N -0.935 5.935 14 Si 0.968 3.032 15 H -0.280 1.280 16 H -0.292 1.292 17 H -0.275 1.275 18 C 0.144 3.856 19 C 0.055 3.945 20 C -0.122 4.122 21 C -0.131 4.131 22 C -0.158 4.158 23 H 0.092 0.908 24 H 0.032 0.968 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.020 0.980 30 H 0.011 0.989 31 H 0.079 0.921 32 H -0.001 1.001 33 H 0.059 0.941 34 H 0.251 0.749 35 H 0.018 0.982 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.018 0.982 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.338 -6.139 17.946 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.311 6.311 3 C 0.043 3.957 4 C -0.150 4.150 5 C -0.059 4.059 6 N -0.264 5.264 7 C -0.076 4.076 8 C 0.059 3.941 9 N -0.339 5.339 10 C -0.398 4.398 11 H 0.086 0.914 12 C -0.246 4.246 13 N -0.581 5.581 14 Si 0.796 3.204 15 H -0.206 1.206 16 H -0.218 1.218 17 H -0.200 1.200 18 C 0.019 3.981 19 C -0.075 4.075 20 C -0.159 4.159 21 C -0.168 4.168 22 C -0.195 4.195 23 H 0.110 0.890 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.038 0.962 30 H 0.030 0.970 31 H 0.097 0.903 32 H 0.017 0.983 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.037 0.963 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.089 0.911 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.496 -5.731 17.959 19.939 hybrid contribution -1.372 -0.628 -1.170 1.909 sum 5.124 -6.359 16.789 18.670 Atomic orbital electron populations 1.22761 0.80806 1.03093 1.00249 1.87887 1.20330 1.27953 1.94911 1.23155 0.95861 0.83082 0.93610 1.21736 1.01114 0.99599 0.92578 1.21942 1.01079 0.94029 0.88837 1.61954 1.08298 1.52696 1.03475 1.22568 0.88601 0.97830 0.98637 1.20646 0.95644 0.92854 0.84980 1.44415 1.03742 1.79420 1.06325 1.19536 1.08046 1.19432 0.92754 0.91423 1.25733 1.01808 0.95759 1.01283 1.70197 1.25131 1.18224 1.44555 0.85326 0.78157 0.77483 0.79412 1.20623 1.21781 1.20024 1.21121 0.85012 0.96381 0.95609 1.22467 0.98461 0.95354 0.91189 1.23113 0.93327 0.98953 1.00515 1.22707 0.95632 0.97111 1.01341 1.23524 0.98485 0.99925 0.97597 0.88981 0.94942 0.92844 0.92275 0.89629 0.89912 0.96197 0.97028 0.90324 0.98289 0.92300 0.94012 0.96384 0.92078 0.88735 0.96328 0.89017 0.90542 0.89566 0.89378 0.91096 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.61 113.37 1.20 1.76 16 2 O -0.39 -9.50 10.21 -148.98 -1.52 -11.02 16 3 C 0.08 1.75 0.82 -10.27 -0.01 1.75 16 4 C -0.11 -2.79 4.27 30.59 0.13 -2.66 16 5 C 0.07 1.97 4.75 86.30 0.41 2.38 16 6 N -0.54 -19.29 4.63 -895.26 -4.14 -23.43 16 7 C 0.05 2.15 5.46 86.38 0.47 2.62 16 8 C 0.18 9.40 5.46 86.35 0.47 9.87 16 9 N -0.61 -32.48 3.04 -698.12 -2.13 -34.61 16 10 C -0.27 -15.23 9.65 84.03 0.81 -14.42 16 11 H 0.07 3.73 7.89 -2.91 -0.02 3.71 16 12 C -0.05 -2.89 4.91 84.86 0.42 -2.47 16 13 N -0.93 -56.32 11.12 21.65 0.24 -56.08 16 14 Si 0.97 45.55 29.59 68.60 2.03 47.58 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 16 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 17 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 18 C 0.14 6.30 6.69 86.35 0.58 6.87 16 19 C 0.05 1.97 5.62 86.38 0.49 2.45 16 20 C -0.12 -2.18 7.36 31.18 0.23 -1.95 16 21 C -0.13 -1.98 7.74 31.18 0.24 -1.74 16 22 C -0.16 -2.70 6.64 31.12 0.21 -2.49 16 23 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.03 0.73 6.79 -2.39 -0.02 0.72 16 25 H 0.05 0.92 7.59 -2.39 -0.02 0.91 16 26 H 0.06 1.58 5.24 -2.39 -0.01 1.57 16 27 H 0.09 2.10 7.30 -2.39 -0.02 2.08 16 28 H 0.08 2.14 6.89 -2.39 -0.02 2.13 16 29 H 0.02 0.62 7.87 -2.38 -0.02 0.60 16 30 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 2.86 6.18 -2.38 -0.01 2.84 16 32 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 33 H 0.06 3.34 6.01 -2.38 -0.01 3.32 16 34 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 35 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 2.53 7.95 -2.39 -0.02 2.52 16 37 H 0.09 2.79 7.99 -2.39 -0.02 2.77 16 38 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.08 1.38 7.08 -2.39 -0.02 1.36 16 41 H 0.09 1.32 7.60 -2.39 -0.02 1.30 16 42 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.07 1.21 8.10 -2.39 -0.02 1.19 16 44 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -65.15 333.80 1.08 -64.08 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.95 Total: 11.52 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 5.64 Total: 1.97 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -6.03 Total: -114.12 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -1.52 Total: -11.02 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -65.15 1.08 -64.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310474746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.061 kcal (2) G-P(sol) polarization free energy of solvation -65.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds