Wall clock time and date at job start Mon Mar 30 2020 04:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99903 * 2 1 4 4 C 1.52999 * 109.47261 * 286.61163 * 3 2 1 5 5 O 1.42901 * 109.46964 * 66.38568 * 4 3 2 6 6 C 1.42901 * 114.00131 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47001 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00648 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99839 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00283 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99849 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47123 * 89.99807 * 11 9 7 13 13 H 1.48502 * 109.47095 * 209.99379 * 11 9 7 14 14 H 1.48497 * 109.46909 * 329.99543 * 11 9 7 15 15 C 1.46905 * 110.99993 * 123.94878 * 2 1 3 16 16 H 1.08999 * 110.63210 * 293.97430 * 15 2 1 17 17 C 1.55144 * 110.70021 * 57.07240 * 15 2 1 18 18 C 1.54911 * 101.68527 * 154.19166 * 17 15 2 19 19 N 1.47895 * 104.77535 * 322.98262 * 18 17 15 20 20 C 1.46894 * 111.01588 * 146.32899 * 19 18 17 21 21 C 1.52997 * 117.50114 * 122.86888 * 20 19 18 22 22 C 1.53006 * 117.50093 * 54.20701 * 20 19 18 23 23 C 1.47443 * 108.58523 * 24.03672 * 19 18 17 24 24 H 1.08996 * 109.47433 * 304.26365 * 1 2 3 25 25 H 1.09004 * 109.46648 * 64.26424 * 1 2 3 26 26 H 1.09001 * 109.46973 * 184.26104 * 1 2 3 27 27 H 1.09004 * 109.46977 * 46.61724 * 3 2 1 28 28 H 1.09002 * 109.46908 * 166.60848 * 3 2 1 29 29 H 1.08996 * 109.47064 * 186.38358 * 4 3 2 30 30 H 1.09001 * 109.46859 * 306.38767 * 4 3 2 31 31 H 1.08999 * 109.46483 * 299.99475 * 6 5 4 32 32 H 1.08993 * 109.47206 * 59.99288 * 6 5 4 33 33 H 0.97002 * 120.00976 * 180.02562 * 10 9 7 34 34 H 1.08998 * 110.99198 * 272.29975 * 17 15 2 35 35 H 1.08994 * 110.99089 * 36.08609 * 17 15 2 36 36 H 1.09004 * 110.37491 * 81.77725 * 18 17 15 37 37 H 1.09001 * 110.37524 * 204.11623 * 18 17 15 38 38 H 1.09007 * 115.55174 * 268.53913 * 20 19 18 39 39 H 1.09011 * 117.49624 * 359.97438 * 21 20 19 40 40 H 1.08998 * 117.50612 * 145.01717 * 21 20 19 41 41 H 1.08999 * 117.50051 * 214.97870 * 22 20 19 42 42 H 1.08999 * 117.49646 * 359.97438 * 22 20 19 43 43 H 1.08997 * 109.88688 * 239.64275 * 23 19 18 44 44 H 1.08994 * 110.02283 * 118.52576 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7932 1.9954 -1.3823 5 8 0.3955 2.1569 -1.6321 6 6 0.0953 2.7346 -2.9042 7 6 -1.3985 2.8572 -3.0603 8 1 -2.0533 2.5266 -2.2676 9 6 -1.9294 3.3913 -4.2152 10 7 -3.2330 3.4979 -4.3518 11 14 -0.7969 3.9625 -5.5867 12 1 -0.5426 2.8359 -6.5201 13 1 -1.4374 5.0811 -6.3240 14 1 0.4895 4.4244 -5.0062 15 6 1.9955 -0.7659 1.1377 16 1 1.7461 -0.2759 2.0789 17 6 1.4555 -2.2202 1.1166 18 6 2.5666 -2.9786 1.8847 19 7 3.8268 -2.3290 1.4637 20 6 4.8041 -2.3149 2.5603 21 6 6.1619 -2.9723 2.3051 22 6 5.1424 -3.6521 3.2225 23 6 3.5211 -0.9596 1.0107 24 1 -0.3634 0.5785 0.8493 25 1 -0.3633 0.4463 -0.9258 26 1 -0.3633 -1.0248 0.0764 27 1 1.4666 1.9636 0.7469 28 1 3.0590 1.3524 0.2380 29 1 2.2833 2.9683 -1.4169 30 1 2.2251 1.3436 -2.1418 31 1 0.5503 3.7229 -2.9708 32 1 0.4920 2.0980 -3.6950 33 1 -3.6066 3.8733 -5.1644 34 1 0.5018 -2.2902 1.6397 35 1 1.3661 -2.5887 0.0948 36 1 2.4256 -2.8711 2.9603 37 1 2.5700 -4.0321 1.6051 38 1 4.7852 -1.4293 3.1956 39 1 6.3298 -3.4157 1.3235 40 1 7.0363 -2.5195 2.7726 41 1 5.3464 -3.6462 4.2932 42 1 4.6394 -4.5423 2.8447 43 1 3.8253 -0.8364 -0.0287 44 1 4.0404 -0.2346 1.6373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338991854.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:33 Heat of formation + Delta-G solvation = -2.426917 kcal Electronic energy + Delta-G solvation = -20814.218047 eV Core-core repulsion = 17767.816311 eV Total energy + Delta-G solvation = -3046.401735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.77231 -37.79092 -36.54763 -34.77064 -32.61792 -30.49048 -29.22109 -28.44599 -27.51013 -24.53502 -22.80301 -22.47934 -21.81393 -21.39113 -20.39916 -19.89859 -16.90648 -16.87924 -16.43311 -15.80475 -15.58366 -14.86994 -14.68161 -14.21003 -13.91830 -13.73383 -13.49909 -13.25854 -12.82152 -12.60669 -12.38003 -12.16821 -11.90742 -11.86687 -11.72122 -11.40516 -11.19335 -11.00576 -10.97228 -10.79786 -10.65430 -10.63799 -10.35957 -10.27374 -9.85328 -9.16256 -8.80257 -8.51317 -8.42815 -8.09414 -6.11186 -4.10073 3.26097 3.32933 3.34612 3.46024 3.61644 4.05736 4.36491 4.43693 4.62129 4.64411 4.69686 4.77148 4.86134 5.10487 5.20225 5.20765 5.23231 5.31745 5.36523 5.40599 5.52232 5.63189 5.67345 5.72622 5.76161 5.86256 5.91130 5.94166 5.97144 6.01668 6.08727 6.13587 6.27855 6.62827 6.72594 6.85191 6.92945 7.03022 7.27358 7.37034 7.61786 8.03059 8.67308 8.99374 9.48518 11.01763 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041910 B = 0.003217 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.940705 B = 8702.487469 C = 9039.366616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.524 5.524 3 C 0.058 3.942 4 C 0.063 3.937 5 O -0.377 6.377 6 C 0.168 3.832 7 C -0.518 4.518 8 H 0.081 0.919 9 C 0.072 3.928 10 N -0.896 5.896 11 Si 0.876 3.124 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.266 1.266 15 C 0.060 3.940 16 H 0.042 0.958 17 C -0.122 4.122 18 C 0.047 3.953 19 N -0.499 5.499 20 C 0.000 4.000 21 C -0.163 4.163 22 C -0.178 4.178 23 C 0.055 3.945 24 H 0.019 0.981 25 H 0.109 0.891 26 H 0.056 0.944 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.001 0.999 32 H -0.001 1.001 33 H 0.266 0.734 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.430 -11.878 14.377 24.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.248 5.248 3 C -0.070 4.070 4 C -0.015 4.015 5 O -0.297 6.297 6 C 0.093 3.907 7 C -0.555 4.555 8 H 0.100 0.900 9 C -0.130 4.130 10 N -0.535 5.535 11 Si 0.703 3.297 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.191 1.191 15 C -0.050 4.050 16 H 0.060 0.940 17 C -0.160 4.160 18 C -0.081 4.081 19 N -0.223 5.223 20 C -0.109 4.109 21 C -0.201 4.201 22 C -0.216 4.216 23 C -0.073 4.073 24 H 0.037 0.963 25 H 0.127 0.873 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.019 0.981 32 H 0.017 0.983 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.116 0.884 43 H 0.110 0.890 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.508 -12.366 13.540 24.673 hybrid contribution 0.085 1.357 0.480 1.441 sum 16.593 -11.009 14.019 24.353 Atomic orbital electron populations 1.22684 0.85539 1.00660 1.03890 1.62112 1.09430 1.13058 1.40224 1.22174 0.99204 0.88543 0.97031 1.22338 0.85677 0.97698 0.95776 1.87887 1.20259 1.83022 1.38486 1.20582 0.97539 0.91516 0.81091 1.20883 0.89224 1.41565 1.03870 0.90050 1.24770 0.95036 0.95264 0.97926 1.69871 1.10534 1.45388 1.27674 0.86845 0.81338 0.78984 0.82550 1.19906 1.20877 1.19121 1.22883 0.94884 0.94648 0.92614 0.94010 1.22787 0.97398 0.93764 1.02032 1.22987 0.88053 0.99201 0.97817 1.63403 1.09843 1.16999 1.32077 1.22701 0.96265 0.96276 0.95695 1.23070 0.92291 1.03494 1.01278 1.23060 1.03999 0.96104 0.98427 1.22889 0.94132 0.88141 1.02165 0.96267 0.87269 0.92476 0.94128 0.90479 0.94129 0.93345 0.98146 0.98313 0.92395 0.90924 0.89296 0.93518 0.90232 0.89291 0.88103 0.88921 0.88874 0.88389 0.89003 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.94 60.06 0.54 0.86 16 2 N -0.52 -7.77 4.54 -232.69 -1.06 -8.83 16 3 C 0.06 0.86 5.43 -3.82 -0.02 0.84 16 4 C 0.06 1.11 6.24 37.16 0.23 1.34 16 5 O -0.38 -8.52 7.40 -35.23 -0.26 -8.78 16 6 C 0.17 4.24 4.76 36.00 0.17 4.41 16 7 C -0.52 -15.25 9.99 -34.44 -0.34 -15.59 16 8 H 0.08 2.61 8.06 -52.49 -0.42 2.18 16 9 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 10 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 11 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 15 C 0.06 0.73 2.63 -65.89 -0.17 0.55 16 16 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 17 C -0.12 -1.34 5.19 -24.59 -0.13 -1.47 16 18 C 0.05 0.46 6.02 -2.27 -0.01 0.44 16 19 N -0.50 -5.33 5.34 -223.25 -1.19 -6.52 16 20 C 0.00 0.00 5.07 -67.71 -0.34 -0.34 16 21 C -0.16 -1.31 10.46 -26.69 -0.28 -1.59 16 22 C -0.18 -1.35 9.83 -26.69 -0.26 -1.61 16 23 C 0.05 0.62 5.31 -2.84 -0.02 0.60 16 24 H 0.02 0.31 8.02 -51.93 -0.42 -0.11 16 25 H 0.11 2.20 5.63 -51.93 -0.29 1.91 16 26 H 0.06 0.83 6.62 -51.93 -0.34 0.49 16 27 H 0.04 0.62 7.94 -51.93 -0.41 0.21 16 28 H 0.08 0.94 6.89 -51.93 -0.36 0.58 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.00 0.02 7.20 -51.93 -0.37 -0.35 16 32 H 0.00 -0.02 7.57 -51.93 -0.39 -0.41 16 33 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.07 0.74 7.90 -51.93 -0.41 0.33 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.43 7.79 -51.93 -0.40 0.02 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.78 7.67 -51.93 -0.40 0.39 16 39 H 0.10 0.88 8.14 -51.92 -0.42 0.45 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.76 7.95 -51.93 -0.41 0.35 16 43 H 0.09 1.16 8.02 -51.93 -0.42 0.74 16 44 H 0.05 0.54 7.29 -51.93 -0.38 0.16 16 LS Contribution 342.80 15.07 5.17 5.17 Total: -1.00 -30.75 342.80 -9.96 -40.71 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -7.98 Total: -2.18 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -0.74 Total: -9.55 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: -1.47 Total: -42.19 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.26 Total: -8.78 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.75 -9.96 -40.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338991854.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.280 kcal (2) G-P(sol) polarization free energy of solvation -30.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds