Wall clock time and date at job start Mon Mar 30 2020 04:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99903 * 2 1 4 4 C 1.52999 * 109.47261 * 286.61163 * 3 2 1 5 5 O 1.42901 * 109.46964 * 66.38568 * 4 3 2 6 6 C 1.42901 * 114.00131 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47001 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00648 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99839 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00283 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99849 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47123 * 89.99807 * 11 9 7 13 13 H 1.48502 * 109.47095 * 209.99379 * 11 9 7 14 14 H 1.48497 * 109.46909 * 329.99543 * 11 9 7 15 15 C 1.46905 * 110.99993 * 123.94878 * 2 1 3 16 16 H 1.08999 * 110.63210 * 293.97430 * 15 2 1 17 17 C 1.55144 * 110.70021 * 57.07240 * 15 2 1 18 18 C 1.54911 * 101.68527 * 154.19166 * 17 15 2 19 19 N 1.47895 * 104.77535 * 322.98262 * 18 17 15 20 20 C 1.46894 * 111.01588 * 146.32899 * 19 18 17 21 21 C 1.52997 * 117.50114 * 122.86888 * 20 19 18 22 22 C 1.53006 * 117.50093 * 54.20701 * 20 19 18 23 23 C 1.47443 * 108.58523 * 24.03672 * 19 18 17 24 24 H 1.08996 * 109.47433 * 304.26365 * 1 2 3 25 25 H 1.09004 * 109.46648 * 64.26424 * 1 2 3 26 26 H 1.09001 * 109.46973 * 184.26104 * 1 2 3 27 27 H 1.09004 * 109.46977 * 46.61724 * 3 2 1 28 28 H 1.09002 * 109.46908 * 166.60848 * 3 2 1 29 29 H 1.08996 * 109.47064 * 186.38358 * 4 3 2 30 30 H 1.09001 * 109.46859 * 306.38767 * 4 3 2 31 31 H 1.08999 * 109.46483 * 299.99475 * 6 5 4 32 32 H 1.08993 * 109.47206 * 59.99288 * 6 5 4 33 33 H 0.97002 * 120.00976 * 180.02562 * 10 9 7 34 34 H 1.08998 * 110.99198 * 272.29975 * 17 15 2 35 35 H 1.08994 * 110.99089 * 36.08609 * 17 15 2 36 36 H 1.09004 * 110.37491 * 81.77725 * 18 17 15 37 37 H 1.09001 * 110.37524 * 204.11623 * 18 17 15 38 38 H 1.09007 * 115.55174 * 268.53913 * 20 19 18 39 39 H 1.09011 * 117.49624 * 359.97438 * 21 20 19 40 40 H 1.08998 * 117.50612 * 145.01717 * 21 20 19 41 41 H 1.08999 * 117.50051 * 214.97870 * 22 20 19 42 42 H 1.08999 * 117.49646 * 359.97438 * 22 20 19 43 43 H 1.08997 * 109.88688 * 239.64275 * 23 19 18 44 44 H 1.08994 * 110.02283 * 118.52576 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7932 1.9954 -1.3823 5 8 0.3955 2.1569 -1.6321 6 6 0.0953 2.7346 -2.9042 7 6 -1.3985 2.8572 -3.0603 8 1 -2.0533 2.5266 -2.2676 9 6 -1.9294 3.3913 -4.2152 10 7 -3.2330 3.4979 -4.3518 11 14 -0.7969 3.9625 -5.5867 12 1 -0.5426 2.8359 -6.5201 13 1 -1.4374 5.0811 -6.3240 14 1 0.4895 4.4244 -5.0062 15 6 1.9955 -0.7659 1.1377 16 1 1.7461 -0.2759 2.0789 17 6 1.4555 -2.2202 1.1166 18 6 2.5666 -2.9786 1.8847 19 7 3.8268 -2.3290 1.4637 20 6 4.8041 -2.3149 2.5603 21 6 6.1619 -2.9723 2.3051 22 6 5.1424 -3.6521 3.2225 23 6 3.5211 -0.9596 1.0107 24 1 -0.3634 0.5785 0.8493 25 1 -0.3633 0.4463 -0.9258 26 1 -0.3633 -1.0248 0.0764 27 1 1.4666 1.9636 0.7469 28 1 3.0590 1.3524 0.2380 29 1 2.2833 2.9683 -1.4169 30 1 2.2251 1.3436 -2.1418 31 1 0.5503 3.7229 -2.9708 32 1 0.4920 2.0980 -3.6950 33 1 -3.6066 3.8733 -5.1644 34 1 0.5018 -2.2902 1.6397 35 1 1.3661 -2.5887 0.0948 36 1 2.4256 -2.8711 2.9603 37 1 2.5700 -4.0321 1.6051 38 1 4.7852 -1.4293 3.1956 39 1 6.3298 -3.4157 1.3235 40 1 7.0363 -2.5195 2.7726 41 1 5.3464 -3.6462 4.2932 42 1 4.6394 -4.5423 2.8447 43 1 3.8253 -0.8364 -0.0287 44 1 4.0404 -0.2346 1.6373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338991854.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:32 Heat of formation + Delta-G solvation = -24.034046 kcal Electronic energy + Delta-G solvation = -20815.155002 eV Core-core repulsion = 17767.816311 eV Total energy + Delta-G solvation = -3047.338691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.67179 -39.06720 -37.79540 -35.80082 -34.79406 -31.69102 -30.46697 -29.52763 -29.27954 -25.79904 -23.91697 -23.57738 -23.22625 -22.47273 -21.21751 -20.88893 -19.03642 -17.88399 -17.42587 -17.12989 -17.03972 -16.39488 -15.93163 -15.51647 -15.27202 -14.76220 -14.68875 -14.45547 -14.29916 -13.86158 -13.57114 -13.46926 -13.17513 -13.09667 -12.88374 -12.69678 -12.47419 -12.36992 -12.15269 -11.94479 -11.86557 -11.82678 -11.69266 -11.30223 -11.25157 -11.02119 -10.90090 -10.25425 -9.37368 -9.20540 -8.36501 -6.43643 1.33778 1.36278 1.47057 2.29789 2.73252 2.85647 2.96407 3.04029 3.12757 3.55248 3.77326 4.00048 4.06525 4.09428 4.14882 4.27848 4.32190 4.38905 4.42420 4.50247 4.55450 4.58226 4.62326 4.68562 4.76166 4.81481 4.83342 4.91455 4.93344 4.96524 5.04245 5.04805 5.13326 5.20870 5.32947 5.36952 5.51283 5.92577 5.94900 6.03856 6.17961 6.23583 6.60215 6.77123 7.20854 8.80397 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041910 B = 0.003217 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.940705 B = 8702.487469 C = 9039.366616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.532 5.532 3 C 0.064 3.936 4 C 0.055 3.945 5 O -0.396 6.396 6 C 0.179 3.821 7 C -0.540 4.540 8 H 0.032 0.968 9 C 0.012 3.988 10 N -0.943 5.943 11 Si 0.954 3.046 12 H -0.261 1.261 13 H -0.274 1.274 14 H -0.246 1.246 15 C 0.061 3.939 16 H 0.045 0.955 17 C -0.120 4.120 18 C 0.053 3.947 19 N -0.511 5.511 20 C -0.015 4.015 21 C -0.163 4.163 22 C -0.168 4.168 23 C 0.062 3.938 24 H 0.014 0.986 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.034 0.966 28 H 0.109 0.891 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.010 0.990 32 H 0.007 0.993 33 H 0.272 0.728 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.195 -12.138 14.703 27.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.257 5.257 3 C -0.064 4.064 4 C -0.022 4.022 5 O -0.315 6.315 6 C 0.103 3.897 7 C -0.578 4.578 8 H 0.050 0.950 9 C -0.185 4.185 10 N -0.582 5.582 11 Si 0.775 3.225 12 H -0.186 1.186 13 H -0.199 1.199 14 H -0.170 1.170 15 C -0.049 4.049 16 H 0.063 0.937 17 C -0.158 4.158 18 C -0.074 4.074 19 N -0.235 5.235 20 C -0.124 4.124 21 C -0.201 4.201 22 C -0.206 4.206 23 C -0.067 4.067 24 H 0.032 0.968 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.052 0.948 28 H 0.127 0.873 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.027 0.973 32 H 0.025 0.975 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 19.292 -12.643 13.894 26.927 hybrid contribution -0.806 1.360 0.484 1.654 sum 18.486 -11.282 14.378 25.995 Atomic orbital electron populations 1.22454 0.86946 1.00990 1.01417 1.62074 1.08215 1.13424 1.41938 1.22178 1.00958 0.88182 0.95046 1.22664 0.83048 0.99027 0.97505 1.87896 1.23692 1.82879 1.37072 1.20276 0.94561 0.92185 0.82654 1.21145 0.91363 1.42121 1.03143 0.94998 1.25818 0.96880 0.94937 1.00915 1.70025 1.12947 1.46294 1.28945 0.85627 0.79456 0.78908 0.78467 1.18598 1.19925 1.16953 1.22927 0.95706 0.94718 0.91531 0.93716 1.22761 0.98350 0.93200 1.01528 1.22959 0.87161 0.99218 0.98069 1.63383 1.10394 1.16480 1.33248 1.22785 0.96466 0.97341 0.95805 1.23112 0.92479 1.03341 1.01141 1.23118 1.03118 0.95116 0.99221 1.22771 0.93147 0.89045 1.01689 0.96762 0.91328 0.91057 0.94810 0.87267 0.92394 0.93072 0.97270 0.97542 0.91876 0.90264 0.90787 0.92566 0.89617 0.88819 0.89071 0.87509 0.87314 0.88636 0.90395 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 8.94 127.69 1.14 2.14 16 2 N -0.53 -15.47 4.54 -890.08 -4.04 -19.51 16 3 C 0.06 1.81 5.43 86.30 0.47 2.27 16 4 C 0.05 1.86 6.24 71.98 0.45 2.31 16 5 O -0.40 -18.11 7.40 -148.98 -1.10 -19.21 16 6 C 0.18 9.02 4.76 71.23 0.34 9.36 16 7 C -0.54 -32.89 9.99 25.60 0.26 -32.64 16 8 H 0.03 2.18 8.06 -2.91 -0.02 2.15 16 9 C 0.01 0.73 5.47 84.66 0.46 1.20 16 10 N -0.94 -59.59 13.96 21.45 0.30 -59.30 16 11 Si 0.95 43.84 27.47 68.60 1.88 45.72 16 12 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 14 H -0.25 -10.43 6.54 99.48 0.65 -9.78 16 15 C 0.06 1.39 2.63 46.10 0.12 1.51 16 16 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 17 C -0.12 -2.51 5.19 31.98 0.17 -2.35 16 18 C 0.05 0.94 6.02 86.76 0.52 1.46 16 19 N -0.51 -9.95 5.34 -860.22 -4.59 -14.54 16 20 C -0.02 -0.24 5.07 44.92 0.23 -0.01 16 21 C -0.16 -2.25 10.46 30.62 0.32 -1.93 16 22 C -0.17 -2.13 9.83 30.62 0.30 -1.83 16 23 C 0.06 1.27 5.31 86.65 0.46 1.73 16 24 H 0.01 0.47 8.02 -2.39 -0.02 0.45 16 25 H 0.07 2.91 5.63 -2.38 -0.01 2.89 16 26 H 0.07 2.11 6.62 -2.39 -0.02 2.10 16 27 H 0.03 1.00 7.94 -2.38 -0.02 0.99 16 28 H 0.11 2.38 6.89 -2.39 -0.02 2.36 16 29 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.01 0.46 7.20 -2.39 -0.02 0.45 16 32 H 0.01 0.33 7.57 -2.39 -0.02 0.31 16 33 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 34 H 0.08 1.53 7.90 -2.39 -0.02 1.51 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 0.90 7.79 -2.38 -0.02 0.88 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.09 1.41 7.67 -2.38 -0.02 1.39 16 39 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.10 1.27 7.95 -2.39 -0.02 1.25 16 43 H 0.08 1.84 8.02 -2.39 -0.02 1.82 16 44 H 0.06 1.15 7.29 -2.39 -0.02 1.13 16 Total: -1.00 -68.20 342.80 -1.43 -69.63 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.88 Total: 13.97 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 5.24 Total: -16.77 kcal Atomic # 7 Polarization: -85.01 SS G_CDS: -8.33 Total: -93.34 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -1.10 Total: -19.21 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.72 kcal Total: -68.20 -1.43 -69.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338991854.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.598 kcal (2) G-P(sol) polarization free energy of solvation -68.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds